FFCP PHASE1:Hg19::chr12:54422217..54422239,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3223 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5128 | |||
|TSSclassifier=strong | |||
|UniProt=P09630 | |||
|association_with_transcript=23bp_to_NM_004503,uc001sev.2_5end | |||
|description=CAGE_peak_3_at_HOXC6_5end | |||
|id=chr12:54422217..54422239,+ | |||
|ontology_enrichment_celltype=CL:0002334!2.79e-10!12;CL:0000136!2.89e-10!15;CL:0000325!2.37e-08!39;CL:0002570!5.11e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0002334;4.68e-15;12!CL:0000136;5.68e-12;13!CL:0002570;6.42e-10;8!CL:0000134;1.70e-07;55!CL:0000723;5.38e-07;61!CL:0002620;6.67e-07;23!CL:0000048;7.39e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,4.68e-15,12;CL:0000136,1.06e-13,15;CL:0002570,5.12e-10,8;CL:0000057,1.70e-08,76;CL:0002620,3.83e-07,23 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!9.48e-10!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.17e-12;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.23e-12,14 | |||
|ontology_enrichment_uberon=UBERON:0001013!7.94e-09!14;UBERON:0002199!6.34e-08!45;UBERON:0002416!6.34e-08!45;UBERON:0001443!6.16e-07!11;UBERON:0002100!9.33e-07!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0001013;1.85e-11;14!UBERON:0003688;1.11e-08;6!UBERON:0002358;1.11e-08;6!UBERON:0003684;1.11e-08;6!UBERON:0001178;1.11e-08;6!UBERON:0001134;3.04e-08;16!UBERON:0002036;3.04e-08;16!UBERON:0000992;3.79e-08;13!UBERON:0011135;5.16e-08;5!UBERON:0002216;5.16e-08;5!UBERON:0011134;5.16e-08;5!UBERON:0002209;5.16e-08;5!UBERON:0002213;5.16e-08;5!UBERON:0007844;5.16e-08;5!UBERON:0011138;5.16e-08;5!UBERON:0001130;5.16e-08;5!UBERON:0001066;5.16e-08;5!UBERON:0001468;5.16e-08;5!UBERON:0001443;1.47e-07;11!UBERON:0002199;3.50e-07;46!UBERON:0002416;3.50e-07;46!UBERON:0004457;3.82e-07;9!UBERON:0000042;3.82e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001013,1.50e-11,14;UBERON:0002199,2.82e-11,46;UBERON:0002416,2.82e-11,46;UBERON:0003688,1.15e-08,6;UBERON:0002358,1.15e-08,6;UBERON:0003684,1.15e-08,6;UBERON:0001178,1.15e-08,6;UBERON:0002097,2.51e-08,41;UBERON:0000992,3.11e-08,13;UBERON:0011135,4.26e-08,5;UBERON:0002216,4.26e-08,5;UBERON:0011134,4.26e-08,5;UBERON:0002209,4.26e-08,5;UBERON:0002213,4.26e-08,5;UBERON:0005856,4.26e-08,5;UBERON:0005866,4.26e-08,5;UBERON:0005863,4.26e-08,5;UBERON:0007844,4.26e-08,5;UBERON:0011138,4.26e-08,5;UBERON:0001130,4.26e-08,5;UBERON:0001066,4.26e-08,5;UBERON:0001468,4.26e-08,5;UBERON:0001443,1.32e-07,11 | |||
|phase1_expression=6.54042165374004,5.99481466894753,5.07435854745496,4.00293193412522,4.91657203870017,0.872338524100369,0,5.68547886084148,13.8428382945914,0.737201809504527,0,1.96597234917155,3.16520373874144,8.41611200128317,2.98257638155124,0.672325146451775,0,0,0,0,0,0,0,0,0,0.382067028739756,0.246301768349837,0.236132343941038,0,0,0.309632246632152,0,0,0,0.697204805222715,0.142169232487422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.87613732627923,0,0,0,0,0,0.795285947051099,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0,0,0,0,0,0,0,0.949265659568129,0,0,0,0,0.993943903390637,0.379891534993739,0.132409180813219,0,0,0,0,0,0,0,0.163461903113459,0,0,0.234321431833797,0,0,5.38015249986484,1.40921398372518,2.91371299862637,4.6348766211742,0,0,0,0,0,9.10161361938026,6.46756327634615,0,0,0,0,0,0,0,1.4351170855109,1.70845911054854,1.90738711043606,1.80054657650641,2.06105058476878,0,0,2.53164498361899,1.94874010322397,3.78650661366172,1.47279837827679,0,1.42003837006646,0.906768884048762,0,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,0,1.39310378409594,2.88751792667834,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,2.94017422771084,0,0,0.590789906681404,0,0.491953754172454,0,0.329250856225877,0,0.904760751704678,0,0,0,0,0,0,0,0,0,0.790204397959275,2.57545848628462,0,0,0,0,0,0,1.16426079513703,3.48760726216754,0,0,0.088048434013226,0,0,0,1.0159663086747,0.763976851116555,3.51652341630141,5.13217338068116,2.36503233217644,0.300343057843917,1.71495859578347,0,0,0,4.26596662000667,17.8828222925941,1.690605505112,0,0,2.05765899409714,9.92943924162948,1.0656887160644,0,4.34097284313154,4.93944202068461,2.28015329005615,0,3.95975936466715,0.904318131178758,1.74306691720059,1.79951384127703,0,0,0,0,0,0,2.31650090668127,0.205476322550383,1.43248770591916,0,0,0,0,0,0,0,0,0,0,0,0,11.5330002215991,11.0037514633129,4.34024037919577,0,0,0,0,3.00946099727719,2.27407504055985,0,0,1.65932251687533,0.0868836144680828,0.195801157462741,0,0,0,0,1.21251028578504,0,2.11673205330776,4.21783273291921,2.455391572609,4.77122160536225,4.22859192543813,3.58195074346692,2.57366273829772,1.48418066444991,5.85996836450091,4.43904313282818,7.63782550928425,2.07701771673448,4.88083589531829,0.241718899183244,0,0,0,0,0,0.451199612907412,1.00119938235739,2.35304930753057,0,1.58327443339314,0,0,0,0,0.270946437543853,0,0.764628819135115,0,1.56712328305525,0,0,0,0,0,0.103041011647722,0,0,4.01985876597321,1.30012049207304,0,0.193341436584244,1.3864375540318,3.22357716924872,1.7918754422989,1.93356440762893,1.45016693914229,1.61930592090592,0.712256285173899,0,0,0,0,0,1.25924938732256,0.6970372701606,6.46870518369786,0,0,0,0,0,0,0,0.255897791311334,0.42793898803392,0,0,0.359744915166629,0.274537029736055,0.353437207037059,1.2130948894399,0,0,0,3.41198885483798,0,0,0,0,0.551365343546124,0,0,0,0,0,0,0,5.30622003154991,2.25972794330179,0,0,0,0.329294892959902,0,0,0,0.670302275535787,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,5.23437948524618,0,0,0,0,0,0,0,0,0,0,0,1.14117339516596,0,0,0,1.4452926759333,0,0.851692475380653,0,0,0,0,0.586164286206121,0,0,0,0,0,0,1.46508179271894,0,0.111443384277478,0,0.47748896947538,0.593929361665277,1.22864280839693,0,0,0,0,0,0,0.276283915531148,0.503865495708552,2.35217969754956,0,0,0.359473404589307,0,1.02314474045374,0.0986434056369336,0,0,0,0,0,0.260427761085233,0,4.34999745260876,0,0,0,0,0,0.347249989866585,0,0,0,0,0,0,0,0,0,0,0.46112780877612,0.718061155278177,0.325942115766024,0.31900115973192,0.366390373607449,0,0,0,0,0,0,0,0,0,0,0,1.27217764290547,0,1.99052386215701,0.707660516026713,0,0,0,0,0.134802265961354,5.61804353109152,0,0,0,0,0,0,0,0,2.55549813004637,2.69589297632843,1.99396161812156,0.330991955875499,0.941798755221676,0,1.70765727617876,0,0,0,0,1.57254001417827,0,0,0,0,0.872901148395775,0,0,0,0.19871461170299,0,0,0,0,0,0.144090417154106,2.74887830798198,0,0,0,0,0,0.104602846312333,0.101998217636322,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0.201550417460179,1.80149941771202,0,0,0,0,0.196854963029498,0.0846733320657845,0,0,0,0,0,0,0,0,0,0.472834243795189,0.891727998294968,0.105600336519406,0,0,1.42939065274673,0,0,1.62899880526114,0,0.653174720218818,1.19730191562487,0.082092520749339,2.21504428321048,0.906496732161005,0,0,0,0,0.342173675768659,0,0.106787412567695,0.628817220398664,0,0.992332043623902,0,0.487170393523584,0,1.08803560673895,3.2589686222951,5.20787480497885,2.62298104567844,1.25643277000187,0,0,0,0,0.665574309221114,1.4903136705932,1.66018361923477,0.124980407962107,1.36484205787483,1.7127920012698,0,1.40500471742064,0.144921028610825,4.32838928371935,3.73941295755559,3.32883516901568,0,0.754703705257725,7.11848977277229,0.686520205190771,0.453692771289717,0.621748802331122,0.443565449968902,2.86734180894664,2.24901556081802,1.55262956876259,15.3441296901117,2.12673371646396,2.60872530905867,1.80309130796662,2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| |||
|short_description=p3@HOXC6 | |||
}} |
Revision as of 13:48, 11 January 2014
Short description: | p3@HOXC6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_HOXC6_5end |
Coexpression cluster: | NA |
Association with transcript: | 23bp_to_NM_004503, uc001sev.2_5end |
EntrezGene: | HOXC6 |
HGNC: | 5128 |
UniProt: | P09630 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 4.68e-15 | 12 |
fat cell | 1.06e-13 | 15 |
mesenchymal stem cell of adipose | 5.12e-10 | 8 |
fibroblast | 1.70e-08 | 76 |
skin fibroblast | 3.83e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
adipose tissue | 1.50e-11 | 14 |
integument | 2.82e-11 | 46 |
integumental system | 2.82e-11 | 46 |
omentum | 1.15e-08 | 6 |
peritoneum | 1.15e-08 | 6 |
abdominal cavity | 1.15e-08 | 6 |
visceral peritoneum | 1.15e-08 | 6 |
skin of body | 2.51e-08 | 41 |
female gonad | 3.11e-08 | 13 |
intervertebral cartilage | 4.26e-08 | 5 |
symphysis | 4.26e-08 | 5 |
nonsynovial joint | 4.26e-08 | 5 |
fibrous joint | 4.26e-08 | 5 |
cartilaginous joint | 4.26e-08 | 5 |
developing mesenchymal condensation | 4.26e-08 | 5 |
pre-cartilage condensation | 4.26e-08 | 5 |
cartilaginous condensation | 4.26e-08 | 5 |
cartilage element | 4.26e-08 | 5 |
post-cranial axial skeletal system | 4.26e-08 | 5 |
vertebral column | 4.26e-08 | 5 |
intervertebral disk | 4.26e-08 | 5 |
intervertebral joint | 4.26e-08 | 5 |
chest | 1.32e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.23e-12 | 14 |