FFCP PHASE1:Hg19::chr11:120008848..120008862,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=23650 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17274 | |||
|TSSclassifier=strong | |||
|UniProt=Q14134 | |||
|association_with_transcript=0bp_to_NM_012101,uc001pwz.2,uc001pxa.2_5end | |||
|coexpression_cluster_id=C226 | |||
|description=CAGE_peak_4_at_TRIM29_5end | |||
|id=chr11:120008848..120008862,- | |||
|ontology_enrichment_celltype=CL:0000066!5.19e-24!254;CL:0002076!1.41e-22!43;CL:0000223!6.56e-15!59;CL:0002251!1.12e-13!21;CL:0002159!2.65e-12!13;CL:0002368!2.92e-09!13;CL:0000622!1.76e-08!5;CL:0000154!6.62e-07!6;CL:0000244!9.41e-07!4;CL:0000731!9.41e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.86e-21;42!CL:0002251;1.48e-17;20!CL:0002159;9.06e-15;14!CL:0002368;3.05e-12;13!CL:0000622;9.27e-11;5!CL:0000154;7.64e-09;6!CL:0000244;1.85e-08;4!CL:0000731;1.85e-08;4!CL:0000240;3.44e-08;6!CL:0000311;3.44e-08;6!CL:0000079;3.44e-08;6!CL:0000237;3.44e-08;6!CL:0000349;4.53e-08;19!CL:0000362;1.62e-07;9!CL:0002202;1.80e-07;9!CL:0002632;1.80e-07;9!CL:0002623;3.98e-07;3!CL:0000307;9.97e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.78e-28,42;CL:0000066,2.18e-27,253;CL:0000223,9.13e-20,58;CL:0002251,1.44e-17,20;CL:0002159,8.90e-15,14;CL:0002368,3.34e-12,13;CL:0000622,9.46e-11,5;CL:0000154,7.77e-09,6;CL:0000244,1.84e-08,4;CL:0000731,1.84e-08,4;CL:0000240,3.50e-08,6;CL:0000311,3.50e-08,6;CL:0000079,3.50e-08,6;CL:0000237,3.50e-08,6;CL:0000036,3.50e-08,6;CL:0000357,3.50e-08,6;CL:0000114,3.50e-08,6;CL:0000349,4.85e-08,19;CL:0000076,5.78e-08,63;CL:0000362,1.67e-07,9;CL:0002202,1.85e-07,9;CL:0002632,1.85e-07,9;CL:0002623,4.02e-07,3;CL:0000068,9.62e-07,3;CL:0000069,9.62e-07,3;CL:0000307,9.62e-07,3;CL:0000377,9.62e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;2.08e-10;58!CL:0000357;3.44e-08;6!CL:0000114;3.44e-08;6!UBERON:0008947;1.01e-07;29!CL:0000377;9.97e-07;3 | |||
|ontology_enrichment_disease=DOID:305!2.25e-17!106;DOID:1749!1.99e-11!14;DOID:0050687!2.15e-11!143;DOID:299!4.21e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;5.61e-15;14 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,5.82e-15,14;DOID:305,1.21e-12,106;DOID:0050687,4.85e-08,143 | |||
|ontology_enrichment_uberon=UBERON:0001004!9.90e-27!72;UBERON:0004119!2.10e-22!169;UBERON:0000925!2.10e-22!169;UBERON:0006595!2.10e-22!169;UBERON:0000065!3.30e-18!53;UBERON:0000077!7.79e-17!130;UBERON:0001007!3.21e-15!155;UBERON:0001555!3.21e-15!155;UBERON:0007026!3.21e-15!155;UBERON:0000072!1.77e-14!46;UBERON:0000161!3.45e-14!35;UBERON:0001557!1.25e-13!19;UBERON:0000166!1.45e-13!21;UBERON:0004921!1.51e-13!129;UBERON:0004185!1.51e-13!129;UBERON:0001041!1.96e-13!98;UBERON:0008947!6.79e-13!38;UBERON:0003258!6.79e-13!38;UBERON:0001737!7.97e-13!9;UBERON:0005631!6.13e-11!14;UBERON:0000158!6.13e-11!14;UBERON:0000165!2.03e-10!28;UBERON:0000930!2.03e-10!28;UBERON:0001044!1.73e-08!6;UBERON:0003293!1.73e-08!6;UBERON:0003294!1.73e-08!6;UBERON:0010047!1.73e-08!6;UBERON:0000167!1.73e-08!6;UBERON:0003124!2.58e-08!7;UBERON:0004175!3.96e-08!25;UBERON:0000062!7.14e-08!511;UBERON:0003408!1.20e-07!10;UBERON:0003102!1.22e-07!95;UBERON:0000365!1.31e-07!5;UBERON:0005156!1.75e-07!59;UBERON:0000990!1.75e-07!59;UBERON:0003729!3.91e-07!5;UBERON:0003133!4.19e-07!48;UBERON:0000974!4.56e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.64e-16;9!UBERON:0001557;1.64e-16;9!UBERON:0000161;1.34e-15;19!UBERON:0000166;1.34e-15;19!UBERON:0000165;1.61e-14;28!UBERON:0000065;5.61e-13;44!UBERON:0001004;9.20e-13;65!UBERON:0000072;4.90e-12;37!UBERON:0001041;2.74e-11;14!UBERON:0001044;7.32e-11;6!UBERON:0003293;7.32e-11;6!UBERON:0003294;7.32e-11;6!UBERON:0010047;7.32e-11;6!UBERON:0003408;7.32e-11;6!UBERON:0000167;7.32e-11;6!UBERON:0000974;9.97e-10;6!UBERON:0000365;1.37e-09;5!UBERON:0005631;1.94e-09;10!UBERON:0000158;1.94e-09;10!UBERON:0000486;6.66e-09;12!UBERON:0000478;1.42e-08;24!UBERON:0005910;6.86e-08;6!UBERON:0003729;9.72e-08;13!UBERON:0003343;3.19e-07;4!UBERON:0004785;3.19e-07;4!UBERON:0000344;5.63e-07;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001004,3.54e-29,74;UBERON:0004119,1.73e-28,160;UBERON:0000925,1.73e-28,160;UBERON:0006595,1.73e-28,160;UBERON:0000065,1.23e-19,54;UBERON:0001007,4.70e-19,145;UBERON:0001555,4.70e-19,145;UBERON:0007026,4.70e-19,145;UBERON:0001557,3.65e-18,19;UBERON:0000161,2.00e-17,36;UBERON:0000072,2.95e-17,47;UBERON:0000166,3.80e-17,22;UBERON:0001041,1.38e-16,87;UBERON:0001737,1.63e-16,9;UBERON:0004921,3.67e-16,118;UBERON:0005631,2.63e-14,14;UBERON:0000158,2.63e-14,14;UBERON:0000165,8.46e-14,29;UBERON:0000930,8.46e-14,29;UBERON:0003102,3.63e-13,99;UBERON:0008947,7.49e-13,38;UBERON:0003258,7.49e-13,38;UBERON:0000153,4.62e-12,62;UBERON:0007811,4.62e-12,62;UBERON:0001044,9.28e-11,6;UBERON:0003293,9.28e-11,6;UBERON:0003294,9.28e-11,6;UBERON:0010047,9.28e-11,6;UBERON:0000167,9.28e-11,6;UBERON:0003124,1.57e-10,7;UBERON:0003408,6.24e-10,10;UBERON:0000033,9.33e-10,56;UBERON:0000365,1.35e-09,5;UBERON:0000974,3.78e-09,10;UBERON:0000478,1.48e-08,24;UBERON:0001444,1.67e-08,49;UBERON:0005910,6.77e-08,6;UBERON:0003729,9.87e-08,13;UBERON:0003343,3.33e-07,4;UBERON:0004785,3.33e-07,4;UBERON:0000344,5.57e-07,20;UBERON:0001987,8.70e-07,4;UBERON:0004340,8.70e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,2.18441372130172,1.05506791291381,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,8.27479102031034,16.2651196140255,8.13458822366933,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,25.1363748921854,13.7190243830239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.6543955456923,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.8226077771446,7.36414525595254,6.30970109855808,0,0,0,0,0,0,0,0,0,0,0,11.4757596038649,11.9695129955452,9.64044119533928,8.93381179132391,9.36881609597346,6.16903609688851,12.5393116588953,11.1846235121447,10.7729203944989,0,0,0,0,0,0,0,0,0,0,17.5600456653801,14.6122279234905,7.23808601363742,13.980855218938,0,0,0,0,0,0,0,0,0.790204397959275,0.858486162094873,0,0,0,4.68669169933885,6.71928512795438,6.80520466763455,6.89600624811932,6.97521452433509,18.0189859207649,0,0,0.207328115540772,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.75942385747893,1.66435439510497,2.72151263996712,0,0,0,0,0,0,0,0,0,0,0,0,0,8.22076528243468,6.07734526976916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0,0,0,0,0,0,1.75169719801128,0,0,14.3566384499043,16.9015663969496,0,0,0,0,0,0,0,0,0,4.13212288402445,2.30628080838127,3.95599408733211,3.33820676823315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9.14110070892364,14.7466500617873,9.80018863751903,1.88287601553558,12.9151611801369,10.1082885400575,14.1897649131736,8.4997658076575,0,0,0,0,0,0,0,0,0,0,8.33136734335508,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18714054040822,0,0,2.78608460693696,0,7.1623345421307,5.3453642549875,10.7506245734731,0,0,0,0,0,0.597743964753209,0.552567831062295,0,0,0,0,2.87578723671446,0.179021174675609,0,1.28236427328014,0,0,0,0,0,0.260427761085233,0,0.724999575434793,14.4517679322585,0,8.03718118010984,0,0,0,0,0,0,0,0,0,0.10893846351899,11.5721707751241,3.61666214967846,0,3.22789466143284,0.0897576444097721,2.49888955420619,3.50901275705111,1.19076871422421,6.39641731222362,0,0,0,0,0,0,0,0.635746315921515,0,0,0,0,0,0,0,0,0,0,0,0,0,0,12.5225356116537,0,0.394584402849391,0,0,0,0,0.103688191397247,0,0,0,0,1.99226682220855,0,0.173559738335131,4.89961987071888,2.78589461057288,1.22308667769421,0,5.51511088347785,3.80064448848165,5.25538925140539,11.4447039456335,0,0.677942222341597,0,0,0,6.2576442475137,0,0,2.59752492456769,0.144090417154106,0,0,0,0,2.12124631155116,0,0,0,0,0,0,0,0,0,0,0,0,2.39614800598789,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0.2249738915515,3.86900977278975,0,6.03782437678679,0.157611414598396,0.104909176269996,0,0,1.15149118391667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.81926008926669,0.106787412567695,0.157204305099666,0,0,0,0,7.66009509324218,0,0,0,0,0.628216385000937,0,0,0,0,0.221858103073705,0,0,0.249960815924213,0,0,0,0,5.21715702998971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.24962460173653,0,0,0,0,0,0,0,0,0,0,0,0,0,0.633936370075881,0,0,0,0,0,5.59518030877778,2.48830904013189,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.51479505104718,6.60630450747346,7.15371534234548,3.69682131681082,0,0,0,0,0,0,0,1.63771917510097,0.147856086217045,0,0,0,0,0,1.09651553371436,1.48863353516788,0.175871244359621,8.30455779657369,0,0,0,0.227662191351298,6.74138013236055,0,0,0.475788130837822,0,0,0.222462803784138,1.64835494986079,0,2.24217730651031,0,0,0,0,0,0,0,0,13.0546183422713,17.5840031406768,20.0465301926087,5.16272830584333,0,0,1.27016115057279,2.7492824225286,0,0,0.111855431797792,3.82785911099448,0.365753774946808,0,0,0,3.39997695141398,0,0,0,0,0,0.150962843566674,0,0,0,0.245148321753905,0,0,0,0,0,0,0,0,4.99951028095841,1.05868461514708,0,0,5.04602211744995,0,0,0,0,0,0,0,0,0,0,0,0.101988829741982,0,0.36757959813938,0,0.454672189309436,0.267964130156178,0,0,6.82348742083139,1.1903221573187,1.0334225573761,2.17261500035503,0,0,0,8.49095316798149,3.42233301085281,7.88019020270674,4.08816570738255,0.99798106963804,2.52350132694021,0,0,0,4.69281884806909,0.244482888365733,1.62758471326295,1.99727032255654,0.201273793591026,0 | |||
|short_description=p4@TRIM29 | |||
}} |
Revision as of 10:48, 11 January 2014
Short description: | p4@TRIM29 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_TRIM29_5end |
Coexpression cluster: | C226_Corneal_Keratinocyte_Esophageal_Urothelial_Mammary_Bronchial_Tracheal |
Association with transcript: | 0bp_to_NM_012101, uc001pwz.2, uc001pxa.2_5end |
EntrezGene: | TRIM29 |
HGNC: | 17274 |
UniProt: | Q14134 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.78e-28 | 42 |
epithelial cell | 2.18e-27 | 253 |
endodermal cell | 9.13e-20 | 58 |
epithelial cell of alimentary canal | 1.44e-17 | 20 |
general ecto-epithelial cell | 8.90e-15 | 14 |
respiratory epithelial cell | 3.34e-12 | 13 |
acinar cell | 9.46e-11 | 5 |
protein secreting cell | 7.77e-09 | 6 |
transitional epithelial cell | 1.84e-08 | 4 |
urothelial cell | 1.84e-08 | 4 |
stratified squamous epithelial cell | 3.50e-08 | 6 |
keratin accumulating cell | 3.50e-08 | 6 |
stratified epithelial cell | 3.50e-08 | 6 |
keratinizing barrier epithelial cell | 3.50e-08 | 6 |
epithelial fate stem cell | 3.50e-08 | 6 |
stratified epithelial stem cell | 3.50e-08 | 6 |
surface ectodermal cell | 3.50e-08 | 6 |
extraembryonic cell | 4.85e-08 | 19 |
squamous epithelial cell | 5.78e-08 | 63 |
epidermal cell | 1.67e-07 | 9 |
epithelial cell of tracheobronchial tree | 1.85e-07 | 9 |
epithelial cell of lower respiratory tract | 1.85e-07 | 9 |
acinar cell of salivary gland | 4.02e-07 | 3 |
duct epithelial cell | 9.62e-07 | 3 |
branched duct epithelial cell | 9.62e-07 | 3 |
tracheal epithelial cell | 9.62e-07 | 3 |
tracheoblast | 9.62e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 5.82e-15 | 14 |
carcinoma | 1.21e-12 | 106 |
cell type cancer | 4.85e-08 | 143 |