FFCP PHASE1:Hg19::chr11:118175415..118175432,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=916 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1674 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-12bp_to_ENST00000528435,ENST00000529713_5end | |||
|coexpression_cluster_id=C18 | |||
|description=CAGE_peak_2_at_CD3E_5end | |||
|id=chr11:118175415..118175432,+ | |||
|ontology_enrichment_celltype=CL:0000084!6.01e-28!25;CL:0000827!6.01e-28!25;CL:0000791!4.45e-25!18;CL:0000789!4.45e-25!18;CL:0002420!4.45e-25!18;CL:0002419!4.45e-25!18;CL:0000790!4.45e-25!18;CL:0000738!5.23e-21!140;CL:0000838!9.02e-20!52;CL:0000542!3.41e-19!53;CL:0000051!3.41e-19!53;CL:0002087!2.00e-17!119;CL:0000037!2.28e-16!172;CL:0000566!2.28e-16!172;CL:0000625!1.07e-15!11;CL:0000988!1.96e-14!182;CL:0002031!3.93e-14!124;CL:0002032!8.79e-14!165;CL:0000837!8.79e-14!165;CL:0000624!1.37e-09!6 | |||
|ontology_enrichment_celltype_v019=CL:0000084;1.43e-45;25!CL:0000791;3.09e-43;18!CL:0000789;3.09e-43;18!CL:0002419;3.09e-43;18!CL:0000625;1.55e-26;11!CL:0000624;9.04e-16;6!CL:0000542;3.24e-13;53!CL:0000898;6.54e-09;3!CL:0000623;3.38e-08;3!CL:0000226;7.52e-08;3!CL:0000842;7.52e-08;3!CL:0000767;1.95e-07;3!CL:0000094;8.39e-07;8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000084,1.44e-45,25;CL:0000827,1.44e-45,25;CL:0000791,2.90e-43,18;CL:0000789,2.90e-43,18;CL:0002420,2.90e-43,18;CL:0002419,2.90e-43,18;CL:0000790,2.90e-43,18;CL:0000625,1.40e-26,11;CL:0000838,1.19e-24,52;CL:0000542,4.74e-24,53;CL:0000051,4.74e-24,53;CL:0000738,3.72e-17,136;CL:0000624,9.28e-16,6;CL:0002087,1.00e-13,115;CL:0000037,5.31e-12,168;CL:0000988,6.63e-11,177;CL:0002031,6.03e-10,120;CL:0002032,1.55e-09,161;CL:0000837,1.55e-09,161;CL:0000898,6.63e-09,3;CL:0000623,3.39e-08,3;CL:0000825,3.39e-08,3;CL:0000226,7.61e-08,3;CL:0000842,7.61e-08,3;CL:0000767,1.71e-07,3;CL:0000094,8.00e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000790;3.09e-43;18!CL:0000051;3.24e-13;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.11e-14!115;UBERON:0000178!1.19e-11!15;UBERON:0000179!1.19e-11!15;UBERON:0000463!1.19e-11!15;UBERON:0004177!5.73e-08!7;UBERON:0002390!7.31e-08!102;UBERON:0003061!7.31e-08!102;UBERON:0002193!1.47e-07!112;UBERON:0002370!2.30e-07!4;UBERON:0005058!2.30e-07!4;UBERON:0009113!2.30e-07!4;UBERON:0003295!2.30e-07!4;UBERON:0005562!2.30e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.17e-20;15!UBERON:0000179;2.17e-20;15!UBERON:0000463;2.17e-20;15!UBERON:0002390;3.58e-14;32!UBERON:0002193;6.22e-10;42!UBERON:0004177;1.51e-08;5!UBERON:0005057;1.51e-08;5!UBERON:0002370;6.97e-07;2!UBERON:0005058;6.97e-07;2!UBERON:0009113;6.97e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,2.32e-20,15;UBERON:0000179,2.32e-20,15;UBERON:0000463,2.32e-20,15;UBERON:0004177,2.89e-13,7;UBERON:0005057,2.89e-13,7;UBERON:0002370,7.84e-12,4;UBERON:0005058,7.84e-12,4;UBERON:0009113,7.84e-12,4;UBERON:0003295,7.84e-12,4;UBERON:0005562,7.84e-12,4;UBERON:0003408,7.26e-09,10;UBERON:0003351,7.68e-08,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,1.96682138424452,11.8987113410136,2.16742572642506,0,0,0,0.0774672005803016,0,0,2.76997704265939,5.81578897663411,4.55722828503289,0.671746422719773,3.2389366601898,0.77272670290256,0,0,0,0.232429036905685,0,0.619412741790207,0,0,0.236482229888585,0,0.645484683583826,0,0,0.272906150057846,0,0,0.641858054152187,0,0,0.398927315243264,0,0,0,0,0,0,0.434377689410233,0,0.368277635987565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0.661044872784862,0,0,0,0.382273228125229,0,2.80254281490768,0,35.6044683906038,27.1177426296924,28.9898113589308,70.3855145594755,43.9995059955347,52.0792586308207,38.9653456815823,74.6450061130663,34.1742852670811,46.9651856517277,33.5796791068619,45.728601142066,39.7981603533227,47.6869923350661,40.3471025967339,61.1484510900961,52.4934433593694,47.0871857437895,39.7234990458912,43.3974782531678,43.3039157770171,50.8568619314292,37.6999341109059,34.7236301613265,22.1368374311182,27.5631092890028,37.9449300075987,38.0120235128623,18.7396089828519,38.3579148311307,23.8127119107104,26.8136968488894,14.7092107680929,25.6339194872554,0,0,0,0,0,0,0,0,0,0,0.175669571386252,0.392937226493138,0,0,0.324547393654683,0.174129737299267,0,0.238490624305342,0,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,0,0,0,0,0,1.06400514659507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,30.4609538596109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246217006087397,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,46.7395050453009,18.5208914589812,18.328343863059,20.40654276848,0,0,0,0,0,0,0,1.24324654030811,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,11.1654734106359,5.60856922128404,16.4360439017304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,11.1638474031077,6.117097657139,7.97506062043828,14.5321383029251,14.3976795580168,7.78167973431261,8.64050299580984,7.13812658664843,0,0,0,0,0,56.7711909920345,37.4651740912732,0,0.191505370132367,0,0,0,0,0,0,0.338583555603207,0,0,0,0,0,0,0,0,0,0,0,0.66614393599564,0,0,0.146508179271894,0,0.334330152832435,0,0,0.296964680832639,0,0,0,0,0,0,0.398495976502139,5.24939439509181,0,0,0,0,0,0,0,0.394573622547734,7.18449277040819,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,0,0,0,0,0,0,0.307801034015188,0,0,0,0,0.31900115973192,0,0,23.5044585850194,0,0,0,0,0.167821586975843,0,0,0,0,0,0,0.995261931078505,0.707660516026713,1.22206028986725,0,0,0,0,0,0,0,0,0,0,2.41981432097328,0,0.442306057399416,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.581934098930517,0,0,0,0,0,0,0,0.85381197895741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201550417460179,0,0,0,0,0.0674035438541849,0,0,0,0,0,0,0,0,0,0,0,0.315222829196793,0.0524545881349981,0,0,0,0,0,0,0,0,0,0,0,0,0,0.58620893471233,0,0.129282956361551,0,0,0,1.60181118851542,0,0.414239055347196,8.93098839261511,0.592834895693833,0,0,0,0,0.306345576763462,0,0,0,0,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.389720617678777,1.0629187225069,0,0,0,0,18.1988530227986,0,0,0,0,0,0.622077260032973,0,0,0,0,0.169732529954025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0.0675375846183947,0,0,0,0,1.09651553371436,0.992422356778588,0,0,0,0,0,0,0.177404740325278,0.115233987555779,0,0.135939465953663,0,0,0,0.39246546425257,0,0,0,0,0,0.500335809236594,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,1.92935395269862,0.218559560503957,0,0.490296643507811,0,0,0,0,0,3.94732455515385,4.31867849422967,0,0,0,0,0,1.37618785021362,0,0,0,0,1.5870805215462,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0.829169439458779,0,0.213233981900981,1.90451545170992,84.546882975332,60.274547581278,0,0.190941474834495,0,0.217716747896961,0,10.8436805353486,0.573777643141411,0,0,0,0,0,0,0.366724332548599,0,0,11.4726062346885,0 | |||
|short_description=p2@CD3E | |||
}} |
Revision as of 10:37, 11 January 2014
Short description: | p2@CD3E |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CD3E_5end |
Coexpression cluster: | C18_CD4_CD8_thymus_Whole_Peripheral_Natural_blood |
Association with transcript: | -12bp_to_ENST00000528435, ENST00000529713_5end |
EntrezGene: | CD3E |
HGNC: | 1674 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
T cell | 1.44e-45 | 25 |
pro-T cell | 1.44e-45 | 25 |
mature alpha-beta T cell | 2.90e-43 | 18 |
alpha-beta T cell | 2.90e-43 | 18 |
immature T cell | 2.90e-43 | 18 |
mature T cell | 2.90e-43 | 18 |
immature alpha-beta T cell | 2.90e-43 | 18 |
CD8-positive, alpha-beta T cell | 1.40e-26 | 11 |
lymphoid lineage restricted progenitor cell | 1.19e-24 | 52 |
lymphocyte | 4.74e-24 | 53 |
common lymphoid progenitor | 4.74e-24 | 53 |
leukocyte | 3.72e-17 | 136 |
CD4-positive, alpha-beta T cell | 9.28e-16 | 6 |
nongranular leukocyte | 1.00e-13 | 115 |
hematopoietic stem cell | 5.31e-12 | 168 |
hematopoietic cell | 6.63e-11 | 177 |
hematopoietic lineage restricted progenitor cell | 6.03e-10 | 120 |
hematopoietic oligopotent progenitor cell | 1.55e-09 | 161 |
hematopoietic multipotent progenitor cell | 1.55e-09 | 161 |
naive T cell | 6.63e-09 | 3 |
natural killer cell | 3.39e-08 | 3 |
pro-NK cell | 3.39e-08 | 3 |
single nucleate cell | 7.61e-08 | 3 |
mononuclear cell | 7.61e-08 | 3 |
basophil | 1.71e-07 | 3 |
granulocyte | 8.00e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
blood | 2.32e-20 | 15 |
haemolymphatic fluid | 2.32e-20 | 15 |
organism substance | 2.32e-20 | 15 |
hemopoietic organ | 2.89e-13 | 7 |
immune organ | 2.89e-13 | 7 |
thymus | 7.84e-12 | 4 |
hemolymphoid system gland | 7.84e-12 | 4 |
thymic region | 7.84e-12 | 4 |
pharyngeal gland | 7.84e-12 | 4 |
thymus primordium | 7.84e-12 | 4 |
gland of gut | 7.26e-09 | 10 |
pharyngeal epithelium | 7.68e-08 | 6 |