FFCP PHASE1:Hg19::chr1:150480576..150480591,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1893 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3153 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000346569_5end | |||
|coexpression_cluster_id=C766 | |||
|description=CAGE_peak_1_at_ECM1_5end | |||
|id=chr1:150480576..150480591,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.65e-28!180;CL:0000057!7.00e-22!75;CL:0002620!1.23e-10!23;CL:0000183!4.81e-09!59;CL:0000680!5.88e-09!57;CL:0000056!5.88e-09!57;CL:0000355!5.88e-09!57;CL:0000187!1.80e-08!54;CL:0000192!3.54e-08!42;CL:0000514!3.54e-08!42;CL:0002371!7.49e-07!591 | |||
|ontology_enrichment_celltype_v019=CL:0002620;1.10e-10;23!CL:0000057;1.02e-08;73!CL:0000134;1.88e-08;55!CL:0000048;1.51e-07;58!CL:0002320;1.71e-07;188!CL:0000723;3.32e-07;61 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.76e-22,76;CL:0002620,1.11e-10,23;CL:0000680,2.75e-09,58;CL:0000056,2.75e-09,58;CL:0000355,2.75e-09,58;CL:0000187,8.50e-09,55;CL:0000192,1.64e-08,43;CL:0000514,1.64e-08,43 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!2.30e-17!95;UBERON:0000475!1.98e-15!365;UBERON:0002199!2.75e-13!45;UBERON:0002416!2.75e-13!45;UBERON:0000914!1.27e-12!83;UBERON:0002329!1.27e-12!83;UBERON:0003077!1.27e-12!83;UBERON:0003059!1.27e-12!83;UBERON:0007282!1.27e-12!83;UBERON:0009618!1.27e-12!83;UBERON:0007285!1.27e-12!83;UBERON:0002097!2.39e-12!40;UBERON:0000486!1.79e-11!82;UBERON:0000468!9.40e-11!659;UBERON:0005256!1.14e-10!143;UBERON:0004290!2.47e-10!70;UBERON:0000467!1.06e-09!625;UBERON:0000062!1.08e-09!511;UBERON:0000480!2.02e-09!626;UBERON:0002100!1.34e-08!216;UBERON:0001134!3.59e-08!61;UBERON:0002036!3.59e-08!61;UBERON:0003082!3.59e-08!61;UBERON:0002385!4.08e-08!63;UBERON:0001015!4.08e-08!63;UBERON:0000383!4.08e-08!63;UBERON:0000481!8.30e-08!347;UBERON:0004923!9.44e-07!57 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;3.24e-10;41!UBERON:0002199;2.58e-09;46!UBERON:0002416;2.58e-09;46!UBERON:0003102;5.92e-09;50!UBERON:0002384;1.24e-07;198 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,2.08e-18,99;UBERON:0002199,6.46e-14,46;UBERON:0002416,6.46e-14,46;UBERON:0002097,5.64e-13,41;UBERON:0000486,8.81e-12,83;UBERON:0007524,8.56e-11,73;UBERON:0002329,1.14e-10,71;UBERON:0003059,1.14e-10,71;UBERON:0007282,1.14e-10,71;UBERON:0004290,1.14e-10,71;UBERON:0009618,1.14e-10,71;UBERON:0003077,1.46e-10,72;UBERON:0007285,1.46e-10,72;UBERON:0007503,9.83e-10,78;UBERON:0004923,7.06e-09,66;UBERON:0003104,9.15e-09,160;UBERON:0009142,9.15e-09,160;UBERON:0005256,1.25e-08,122;UBERON:0001134,1.75e-08,62;UBERON:0002036,1.75e-08,62;UBERON:0003082,1.75e-08,62;UBERON:0002385,2.00e-08,64;UBERON:0001015,2.00e-08,64;UBERON:0000383,2.00e-08,64 | |||
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| |||
|short_description=p1@ECM1 | |||
}} |
Revision as of 20:42, 10 January 2014
Short description: | p1@ECM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ECM1_5end |
Coexpression cluster: | C766_Smooth_esophagus_throat_epididymis_Fibroblast_tonsil_Melanocyte |
Association with transcript: | 0bp_to_ENST00000346569_5end |
EntrezGene: | ECM1 |
HGNC: | 3153 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.76e-22 | 76 |
skin fibroblast | 1.11e-10 | 23 |
muscle precursor cell | 2.75e-09 | 58 |
myoblast | 2.75e-09 | 58 |
multi-potent skeletal muscle stem cell | 2.75e-09 | 58 |
muscle cell | 8.50e-09 | 55 |
smooth muscle cell | 1.64e-08 | 43 |
smooth muscle myoblast | 1.64e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
surface structure | 2.08e-18 | 99 |
integument | 6.46e-14 | 46 |
integumental system | 6.46e-14 | 46 |
skin of body | 5.64e-13 | 41 |
multilaminar epithelium | 8.81e-12 | 83 |
dense mesenchyme tissue | 8.56e-11 | 73 |
somite | 1.14e-10 | 71 |
presomitic mesoderm | 1.14e-10 | 71 |
presumptive segmental plate | 1.14e-10 | 71 |
dermomyotome | 1.14e-10 | 71 |
trunk paraxial mesoderm | 1.14e-10 | 71 |
paraxial mesoderm | 1.46e-10 | 72 |
presumptive paraxial mesoderm | 1.46e-10 | 72 |
epithelial vesicle | 9.83e-10 | 78 |
organ component layer | 7.06e-09 | 66 |
mesenchyme | 9.15e-09 | 160 |
entire embryonic mesenchyme | 9.15e-09 | 160 |
trunk mesenchyme | 1.25e-08 | 122 |
skeletal muscle tissue | 1.75e-08 | 62 |
striated muscle tissue | 1.75e-08 | 62 |
myotome | 1.75e-08 | 62 |
muscle tissue | 2.00e-08 | 64 |
musculature | 2.00e-08 | 64 |
musculature of body | 2.00e-08 | 64 |