FFCP PHASE1:Hg19::chr1:100643765..100643829,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=127495 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28228 | |||
|TSSclassifier=strong | |||
|UniProt=Q96DD0 | |||
|association_with_transcript=0bp_to_ENST00000342895,ENST00000370136,ENST00000370137,ENST00000370138,NM_144620,uc001dsw.1,uc001dsx.1,uc001dsy.1,uc001dsz.1_5end | |||
|coexpression_cluster_id=C3838 | |||
|description=CAGE_peak_1_at_LRRC39_5end | |||
|id=chr1:100643765..100643829,- | |||
|ontology_enrichment_celltype=CL:0000147!4.07e-08!14;CL:0000148!1.10e-07!10;CL:0000541!1.10e-07!10;CL:0000188!5.06e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:0000148;1.24e-10;10!CL:0000147;2.20e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,1.22e-10,10;CL:0000541,1.22e-10,10;CL:0000147,2.18e-07,14 | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.03e-13;82!UBERON:0005062;5.85e-08;4!UBERON:0007284;5.85e-08;4 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:114;4.31e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:114,3.70e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0007023!2.47e-63!115;UBERON:0001049!1.19e-41!57;UBERON:0005068!1.19e-41!57;UBERON:0006241!1.19e-41!57;UBERON:0007135!1.19e-41!57;UBERON:0002780!3.74e-41!41;UBERON:0001890!3.74e-41!41;UBERON:0006240!3.74e-41!41;UBERON:0003080!6.53e-40!42;UBERON:0003075!3.56e-37!86;UBERON:0007284!3.56e-37!86;UBERON:0005743!8.46e-36!86;UBERON:0002616!1.57e-35!59;UBERON:0002346!8.51e-35!90;UBERON:0001017!4.26e-33!82;UBERON:0000955!6.31e-33!69;UBERON:0006238!6.31e-33!69;UBERON:0001893!2.01e-31!34;UBERON:0002020!5.72e-31!34;UBERON:0003528!5.72e-31!34;UBERON:0000073!6.22e-31!94;UBERON:0001016!6.22e-31!94;UBERON:0003056!8.52e-31!61;UBERON:0002791!4.66e-30!33;UBERON:0001869!3.78e-29!32;UBERON:0000153!5.53e-26!129;UBERON:0007811!5.53e-26!129;UBERON:0001950!8.40e-24!20;UBERON:0002619!1.23e-23!22;UBERON:0000033!3.25e-23!123;UBERON:0004121!1.87e-20!169;UBERON:0000956!3.54e-20!25;UBERON:0000203!3.54e-20!25;UBERON:0000924!1.42e-19!173;UBERON:0006601!1.42e-19!173;UBERON:0000483!3.32e-13!309;UBERON:0002420!4.05e-13!9;UBERON:0007245!4.05e-13!9;UBERON:0010009!4.05e-13!9;UBERON:0010011!4.05e-13!9;UBERON:0000454!4.05e-13!9;UBERON:0000119!7.09e-13!312;UBERON:0002308!1.26e-12!9;UBERON:0000125!1.26e-12!9;UBERON:0001894!2.07e-11!7;UBERON:0006222!2.07e-11!7;UBERON:0000025!6.88e-11!194;UBERON:0000481!1.31e-10!347;UBERON:0009663!1.42e-10!7;UBERON:0000200!5.19e-10!6;UBERON:0000475!6.19e-10!365;UBERON:0001871!2.28e-09!7;UBERON:0004111!3.62e-09!241;UBERON:0002021!4.77e-08!5;UBERON:0000477!5.78e-08!286;UBERON:0003296!2.07e-07!4;UBERON:0010133!2.07e-07!4;UBERON:0000062!2.47e-07!511;UBERON:0000369!4.67e-07!4;UBERON:0002435!4.67e-07!4;UBERON:0000204!4.67e-07!4;UBERON:0010082!4.67e-07!4;UBERON:0000064!6.89e-07!219;UBERON:0007100!9.18e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.57e-24;41!UBERON:0001890;1.57e-24;41!UBERON:0001869;3.04e-24;32!UBERON:0001950;2.83e-23;20!UBERON:0001893;1.56e-22;34!UBERON:0002791;6.46e-22;32!UBERON:0002619;5.82e-21;22!UBERON:0003528;3.65e-20;34!UBERON:0002020;3.65e-20;34!UBERON:0000956;3.67e-18;25!UBERON:0000203;3.67e-18;25!UBERON:0000200;1.02e-16;6!UBERON:0001894;7.54e-15;7!UBERON:0007023;2.01e-14;114!UBERON:0000073;4.99e-14;53!UBERON:0002616;4.99e-14;53!UBERON:0002784;1.03e-12;4!UBERON:0000955;6.63e-12;68!UBERON:0001017;8.57e-11;75!UBERON:0003978;1.69e-10;3!UBERON:0000946;1.69e-10;3!UBERON:0004151;1.74e-10;3!UBERON:0001870;3.29e-09;3!UBERON:0001872;5.53e-09;5!UBERON:0007100;7.00e-09;25!UBERON:0005090;8.40e-08;2!UBERON:0001630;8.40e-08;2!UBERON:0002420;8.62e-08;9!UBERON:0007245;8.62e-08;9!UBERON:0010009;8.62e-08;9!UBERON:0010011;8.62e-08;9!UBERON:0000454;8.62e-08;9!UBERON:0001905;8.67e-08;2!UBERON:0002757;8.67e-08;2!UBERON:0010134;8.67e-08;2!UBERON:0005408;8.67e-08;2!UBERON:0001899;8.67e-08;2!UBERON:0000341;1.05e-07;2!UBERON:0003296;1.06e-07;4!UBERON:0010133;1.06e-07;4!UBERON:0002081;1.67e-07;2!UBERON:0002133;2.02e-07;2!UBERON:0000369;3.10e-07;4!UBERON:0002435;3.10e-07;4!UBERON:0000204;3.10e-07;4!UBERON:0001016;5.30e-07;83!UBERON:0002771;8.13e-07;2!UBERON:0009663;8.23e-07;7!UBERON:0003127;8.89e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,3.54e-51,114;UBERON:0002780,2.46e-36,41;UBERON:0001890,2.46e-36,41;UBERON:0003080,2.46e-36,41;UBERON:0006240,2.46e-36,41;UBERON:0000073,8.89e-27,53;UBERON:0002616,8.89e-27,53;UBERON:0001869,1.99e-26,32;UBERON:0001049,5.08e-25,56;UBERON:0005068,5.08e-25,56;UBERON:0006241,5.08e-25,56;UBERON:0007135,5.08e-25,56;UBERON:0003056,1.05e-24,61;UBERON:0001893,1.22e-24,34;UBERON:0002791,1.59e-23,32;UBERON:0001950,2.21e-23,20;UBERON:0000955,8.27e-23,68;UBERON:0006238,8.27e-23,68;UBERON:0003075,4.77e-22,82;UBERON:0007284,4.77e-22,82;UBERON:0003528,6.40e-22,34;UBERON:0002020,6.40e-22,34;UBERON:0002619,4.65e-21,22;UBERON:0002346,1.10e-20,86;UBERON:0010314,8.23e-20,132;UBERON:0001017,1.06e-19,81;UBERON:0010371,7.62e-19,104;UBERON:0000956,3.02e-18,25;UBERON:0000203,3.02e-18,25;UBERON:0001016,4.46e-17,89;UBERON:0000200,8.32e-17,6;UBERON:0001894,7.65e-15,7;UBERON:0006222,7.65e-15,7;UBERON:0004121,9.46e-15,171;UBERON:0000924,9.46e-15,171;UBERON:0006601,9.46e-15,171;UBERON:0002784,1.15e-12,4;UBERON:0003978,1.66e-10,3;UBERON:0009751,1.66e-10,3;UBERON:0000946,1.66e-10,3;UBERON:0002523,1.66e-10,3;UBERON:0005983,1.66e-10,3;UBERON:0002165,1.66e-10,3;UBERON:0002062,1.66e-10,3;UBERON:0007280,1.66e-10,3;UBERON:0004151,1.77e-10,3;UBERON:0001870,2.21e-09,3;UBERON:0001872,4.23e-09,5;UBERON:0000025,2.76e-08,192;UBERON:0007100,4.15e-08,27;UBERON:0005090,8.40e-08,2;UBERON:0001630,8.40e-08,2;UBERON:0001905,8.68e-08,2;UBERON:0002757,8.68e-08,2;UBERON:0010134,8.68e-08,2;UBERON:0005408,8.68e-08,2;UBERON:0001899,8.68e-08,2;UBERON:0003296,9.17e-08,4;UBERON:0010133,9.17e-08,4;UBERON:0002420,9.68e-08,9;UBERON:0007245,9.68e-08,9;UBERON:0010009,9.68e-08,9;UBERON:0010011,9.68e-08,9;UBERON:0000454,9.68e-08,9;UBERON:0000341,1.05e-07,2;UBERON:0004111,1.32e-07,240;UBERON:0011216,1.49e-07,223;UBERON:0002081,1.65e-07,2;UBERON:0010227,1.65e-07,2;UBERON:0002133,1.99e-07,2;UBERON:0000369,3.82e-07,4;UBERON:0002435,3.82e-07,4;UBERON:0000204,3.82e-07,4;UBERON:0010082,3.82e-07,4;UBERON:0000483,5.15e-07,306;UBERON:0000119,7.39e-07,309;UBERON:0002771,8.38e-07,2;UBERON:0009663,8.92e-07,7;UBERON:0003127,9.73e-07,2;UBERON:0002702,9.73e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327447688744282,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0,0.622422070799533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231860809950154,0,0,0,0,0,0,0,0,0.148631162288728,0,0,0,0,0,0,0,0.264145302039678,0,0,0,18.0968998732682,7.63976851116555,5.86087236050235,0,3.39330725920968,2.40274446275134,6.28818151787272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256450125116389,0,0.976135183992909,0.206082023295445,0.183138929636687,0.247528499761764,0,0,0,0.096670718292122,0.154048617114644,0.307007349452259,0.551346289938122,0,0.290033387828457,0.93749290157711,9.5264278142009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.564862804660675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.07667176470977,0,0,0,0,0,0,0.994147647766298,1.40669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0.197286811273867,0,0,1.93866549219044,1.48428957058962,0,0,0,0,0,0,0,0,0,0,3.54296554325536,0.723578631752448,0,0,0,1.09692698576986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0.611030144933625,0,0,0,0.876214728748802,63.4036341366043,1.40558667435203,0,0,0,0,0,0.61214552326098,0.126373159256976,0,0,0,0,0,0,0,0,0,0,0,4.71762004253481,0,0,0,0,2.23074737923365,0,16.7225748177594,0,0,2.65905343014691,0,0,0.213452994739353,0,0,0,0.171594997861965,0,0,0,0,0,0,0,1.80126086612937,0.684526894459965,0,0,0,31.0003465412202,60.7275123630962,6.46085722119133,2.79550600698588,10.7306512034143,55.1233499881425,85.9276613105229,0,0,0,0,0,0,0,0,0.817220436669454,0,0,0,0,0,3.28047605953333,0,0.0788057072991982,0,0,0,0,50.7433681725091,39.0634262515605,0,0,0,0,0,0,0,0,0,0,0.387848869084652,0.26446520348538,0,0,0,0.471612915298998,0,0,0,0,0,0,0.2506898940227,0,0,0,1.77213635993397,5.12510312588245,2.8793914062495,0,0.443716206147409,0.869349641179368,0.138348634936231,0,17.7429467523728,0,0,0,0,0,0,0,0,0,0,0.228840068396924,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.52084279766904,0,0,0.490696182767533,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.0553352030867,4.25089728976755,0.478901577171454,2.2562800066483,0.756215088665154,0.96820153449905,2.42213468447777,0,0,0,0,0,0,0,0.397832444232549,0,0,0,0,0,0,2.22874029240702,1.56215619722769,1.86018116851066,1.58539525484767,0,0,39.6968942711435,0,0,39.6419358549932,101.893967832304,1.82089681270989,0.455324382702595,0.709618961301111,0,0,0.475788130837822,1.64431933907123,0,0,0,2.04250266890802,0,0,0,0,18.5839014859306,0,0,0.173858272302579,0,0,0,0,0.860454717640555,0,0,0,0,0,0,0,0,0,54.3840223237832,135.206916629677,49.8720205475426,20.885572701543,0,0,0,0,0,0,0,0,0,0,0,0.785233868459781,0.891139200981258,0.8453114551668,0,0,0,0,0,0,0,0,2.2936464170227,0.286679166302903,0,1.35982980381829,0.436350690340377,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,2.48750831837634,1.13776295448085,67.8084062445119,21.4257988317366,0.0645889098360061,0.186224142887574,0,0.954707374172474,4.04234377916439,47.2445342936406,70.1578267224826,1.81850543139386,1.36272190246085,4.9899053481902,0,0,0,0,2.34640942403454,0,0,0,1.00636896795513,0 | |||
|short_description=p1@LRRC39 | |||
}} |
Revision as of 19:47, 10 January 2014
Short description: | p1@LRRC39 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LRRC39_5end |
Coexpression cluster: | C3838_skeletal_pineal_heart_tongue_throat_diaphragm_left |
Association with transcript: | 0bp_to_ENST00000342895, ENST00000370136, ENST00000370137, ENST00000370138, NM_144620, uc001dsw.1, uc001dsx.1, uc001dsy.1, uc001dsz.1_5end |
EntrezGene: | LRRC39 |
HGNC: | 28228 |
UniProt: | Q96DD0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 1.22e-10 | 10 |
melanoblast | 1.22e-10 | 10 |
pigment cell | 2.18e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
heart disease | 3.70e-07 | 2 |