FFCP PHASE1:Mm9::chr9:5332819..5332833,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=58|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr9:5332819..5332833,+|id=chr9:5332819..5332833,+|ontology_enrichment_celltype=CL:0002563!3.09e-16!9;CL:0002251!3.09e-16!9;CL:0000239!6.37e-12!6;CL:0000677!6.37e-12!6;CL:0000212!6.37e-12!6;CL:0000584!6.37e-12!6;CL:0000066!1.56e-10!25;CL:0000075!4.49e-10!7;CL:0002076!6.39e-09!15;CL:0000223!1.02e-07!20;CL:0000473!3.26e-07!3;CL:0000627!3.26e-07!3;CL:0000682!3.26e-07!3|ontology_enrichment_celltype_v019_2=CL:0000239,1.05e-21,6;CL:0000677,1.05e-21,6;CL:0000584,1.05e-21,6;CL:0002563,5.87e-19,9;CL:0002251,5.87e-19,9;CL:0000075,1.57e-18,7;CL:0000066,5.96e-16,25;CL:0000682,1.49e-12,3;CL:0002076,4.86e-11,15;CL:0000223,2.15e-10,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!1.60e-23!43;UBERON:0000344!3.43e-23!15;UBERON:0001242!1.59e-19!13;UBERON:0000060!1.59e-19!13;UBERON:0001262!1.59e-19!13;UBERON:0004786!1.59e-19!13;UBERON:0005409!1.71e-19!59;UBERON:0003350!3.09e-16!9;UBERON:0004808!3.09e-16!9;UBERON:0001277!3.09e-16!9;UBERON:0004923!5.44e-15!24;UBERON:0000485!6.63e-13!11;UBERON:0001007!1.05e-10!128;UBERON:0001555!1.05e-10!128;UBERON:0007026!1.05e-10!128;UBERON:0004119!2.13e-10!130;UBERON:0000925!2.13e-10!130;UBERON:0006595!2.13e-10!130;UBERON:0004921!3.99e-09!126;UBERON:0004185!3.99e-09!126|ontology_enrichment_uberon_v019_2=UBERON:0000160,7.07e-38,31;UBERON:0000344,4.50e-33,15;UBERON:0001242,2.77e-26,13;UBERON:0001262,2.77e-26,13;UBERON:0004786,2.77e-26,13;UBERON:0005409,8.07e-24,47;UBERON:0004923,7.46e-20,24;UBERON:0003350,5.87e-19,9;UBERON:0004808,5.87e-19,9;UBERON:0001277,5.87e-19,9;UBERON:0000485,2.32e-15,11;UBERON:0002108,1.00e-14,4;UBERON:0000331,1.45e-11,3;UBERON:0002116,1.45e-11,3;UBERON:0001204,1.45e-11,3;UBERON:0001168,1.45e-11,3;UBERON:0001007,4.30e-11,116;UBERON:0001555,4.30e-11,116;UBERON:0007026,4.30e-11,116;UBERON:0004119,7.75e-11,118;UBERON:0000925,7.75e-11,118;UBERON:0006595,7.75e-11,118;UBERON:0004921,8.43e-09,114;UBERON:0001962,1.07e-08,2;UBERON:0001961,1.07e-08,2;UBERON:0001744,1.07e-08,2|phase1_expression=0,5.23463111459042,3.63999391511629,1.20985684522732,1.50268718983904,3.52546471014969,3.27057696833736,0.258246646883153,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51983330145495,4.12936705920906,7.46501553349526,5.1691439539089,4.09395342103189,3.04037471130198,2.26827116783938,2.66076612786366,0,0,0,1.1554064790051,0.831173226792462,0.816677425049476,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44932244350839,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0.494389935468748,0,0,0,0,0,0,0,0,1.02182822083437,0.11981512450592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264450566663544,0,0,0,0.80673409849337,0.22237804384487,0.570676878337677,1.42358718463353,1.64698954724011,3.01602250560323,2.18852119245266,2.33956904542944,0.898819408654221,1.51296634912286,1.39398891278057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238043640886014,0,0,0,0,0,0,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04036585640896,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0.436725127492355,0,0,0,0.90730481304255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15241361331,0,0,0.192423683280659,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320919209591815,0,0,0,0.0936415074698824,0,0.0574354689556133,0,0.115884325944855,0,0,0.147198920134397,0,0.177475806159338,0,0,0.0941093804153306,0,0,0,0.135804113845862,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr9:5332819..5332833,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=58 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr9:5332819..5332833,+ | |||
|id=chr9:5332819..5332833,+ | |||
|ontology_enrichment_celltype=CL:0002563!3.09e-16!9;CL:0002251!3.09e-16!9;CL:0000239!6.37e-12!6;CL:0000677!6.37e-12!6;CL:0000212!6.37e-12!6;CL:0000584!6.37e-12!6;CL:0000066!1.56e-10!25;CL:0000075!4.49e-10!7;CL:0002076!6.39e-09!15;CL:0000223!1.02e-07!20;CL:0000473!3.26e-07!3;CL:0000627!3.26e-07!3;CL:0000682!3.26e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,1.05e-21,6;CL:0000677,1.05e-21,6;CL:0000584,1.05e-21,6;CL:0002563,5.87e-19,9;CL:0002251,5.87e-19,9;CL:0000075,1.57e-18,7;CL:0000066,5.96e-16,25;CL:0000682,1.49e-12,3;CL:0002076,4.86e-11,15;CL:0000223,2.15e-10,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!1.60e-23!43;UBERON:0000344!3.43e-23!15;UBERON:0001242!1.59e-19!13;UBERON:0000060!1.59e-19!13;UBERON:0001262!1.59e-19!13;UBERON:0004786!1.59e-19!13;UBERON:0005409!1.71e-19!59;UBERON:0003350!3.09e-16!9;UBERON:0004808!3.09e-16!9;UBERON:0001277!3.09e-16!9;UBERON:0004923!5.44e-15!24;UBERON:0000485!6.63e-13!11;UBERON:0001007!1.05e-10!128;UBERON:0001555!1.05e-10!128;UBERON:0007026!1.05e-10!128;UBERON:0004119!2.13e-10!130;UBERON:0000925!2.13e-10!130;UBERON:0006595!2.13e-10!130;UBERON:0004921!3.99e-09!126;UBERON:0004185!3.99e-09!126 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,7.07e-38,31;UBERON:0000344,4.50e-33,15;UBERON:0001242,2.77e-26,13;UBERON:0001262,2.77e-26,13;UBERON:0004786,2.77e-26,13;UBERON:0005409,8.07e-24,47;UBERON:0004923,7.46e-20,24;UBERON:0003350,5.87e-19,9;UBERON:0004808,5.87e-19,9;UBERON:0001277,5.87e-19,9;UBERON:0000485,2.32e-15,11;UBERON:0002108,1.00e-14,4;UBERON:0000331,1.45e-11,3;UBERON:0002116,1.45e-11,3;UBERON:0001204,1.45e-11,3;UBERON:0001168,1.45e-11,3;UBERON:0001007,4.30e-11,116;UBERON:0001555,4.30e-11,116;UBERON:0007026,4.30e-11,116;UBERON:0004119,7.75e-11,118;UBERON:0000925,7.75e-11,118;UBERON:0006595,7.75e-11,118;UBERON:0004921,8.43e-09,114;UBERON:0001962,1.07e-08,2;UBERON:0001961,1.07e-08,2;UBERON:0001744,1.07e-08,2 | |||
|phase1_expression=0,5.23463111459042,3.63999391511629,1.20985684522732,1.50268718983904,3.52546471014969,3.27057696833736,0.258246646883153,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.51983330145495,4.12936705920906,7.46501553349526,5.1691439539089,4.09395342103189,3.04037471130198,2.26827116783938,2.66076612786366,0,0,0,1.1554064790051,0.831173226792462,0.816677425049476,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44932244350839,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0.494389935468748,0,0,0,0,0,0,0,0,1.02182822083437,0.11981512450592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264450566663544,0,0,0,0.80673409849337,0.22237804384487,0.570676878337677,1.42358718463353,1.64698954724011,3.01602250560323,2.18852119245266,2.33956904542944,0.898819408654221,1.51296634912286,1.39398891278057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238043640886014,0,0,0,0,0,0,0.144649058581512,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04036585640896,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0.436725127492355,0,0,0,0.90730481304255,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15241361331,0,0,0.192423683280659,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320919209591815,0,0,0,0.0936415074698824,0,0.0574354689556133,0,0.115884325944855,0,0,0.147198920134397,0,0.177475806159338,0,0,0.0941093804153306,0,0,0,0.135804113845862,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr9:5332819..5332833,+ | |||
}} |
Revision as of 18:13, 14 September 2013
Short description: | p@chr9:5332819..5332833, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr9:5332819..5332833, + |
Coexpression cluster: | MCL_coexpression_mm9:58 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 1.05e-21 | 6 |
gut absorptive cell | 1.05e-21 | 6 |
enterocyte | 1.05e-21 | 6 |
intestinal epithelial cell | 5.87e-19 | 9 |
epithelial cell of alimentary canal | 5.87e-19 | 9 |
columnar/cuboidal epithelial cell | 1.57e-18 | 7 |
epithelial cell | 5.96e-16 | 25 |
M cell of gut | 1.49e-12 | 3 |
endo-epithelial cell | 4.86e-11 | 15 |
endodermal cell | 2.15e-10 | 20 |
Ontology term | p-value | n |
---|---|---|
intestine | 7.07e-38 | 31 |
mucosa | 4.50e-33 | 15 |
intestinal mucosa | 2.77e-26 | 13 |
wall of intestine | 2.77e-26 | 13 |
gastrointestinal system mucosa | 2.77e-26 | 13 |
gastrointestinal system | 8.07e-24 | 47 |
organ component layer | 7.46e-20 | 24 |
epithelium of mucosa | 5.87e-19 | 9 |
gastrointestinal system epithelium | 5.87e-19 | 9 |
intestinal epithelium | 5.87e-19 | 9 |
simple columnar epithelium | 2.32e-15 | 11 |
small intestine | 1.00e-14 | 4 |
ileal mucosa | 1.45e-11 | 3 |
ileum | 1.45e-11 | 3 |
mucosa of small intestine | 1.45e-11 | 3 |
wall of small intestine | 1.45e-11 | 3 |
digestive system | 4.30e-11 | 116 |
digestive tract | 4.30e-11 | 116 |
primitive gut | 4.30e-11 | 116 |
endoderm-derived structure | 7.75e-11 | 118 |
endoderm | 7.75e-11 | 118 |
presumptive endoderm | 7.75e-11 | 118 |
subdivision of digestive tract | 8.43e-09 | 114 |
gut-associated lymphoid tissue | 1.07e-08 | 2 |
mucosa-associated lymphoid tissue | 1.07e-08 | 2 |
lymphoid tissue | 1.07e-08 | 2 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.