FFCP PHASE1:Mm9::chr9:46050715..46050725,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=191|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr9:46050715..46050725,+|id=chr9:46050715..46050725,+|ontology_enrichment_celltype=CL:0000239!1.96e-12!6;CL:0000677!1.96e-12!6;CL:0000212!1.96e-12!6;CL:0000584!1.96e-12!6;CL:0000075!1.58e-10!7;CL:0002563!5.46e-08!9;CL:0002251!5.46e-08!9;CL:0000473!1.38e-07!3;CL:0000627!1.38e-07!3;CL:0000682!1.38e-07!3|ontology_enrichment_celltype_v019_2=CL:0000239,5.13e-18,6;CL:0000677,5.13e-18,6;CL:0000584,5.13e-18,6;CL:0000075,2.34e-15,7;CL:0002563,8.26e-12,9;CL:0002251,8.26e-12,9;CL:0000066,8.29e-11,25;CL:0000682,1.10e-10,3;CL:0002076,7.85e-07,15|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!1.01e-21!43;UBERON:0005409!3.40e-18!59;UBERON:0000344!1.55e-17!15;UBERON:0001242!8.44e-14!13;UBERON:0000060!8.44e-14!13;UBERON:0001262!8.44e-14!13;UBERON:0004786!8.44e-14!13;UBERON:0004923!1.11e-11!24;UBERON:0001007!3.19e-09!128;UBERON:0001555!3.19e-09!128;UBERON:0007026!3.19e-09!128;UBERON:0004119!5.87e-09!130;UBERON:0000925!5.87e-09!130;UBERON:0006595!5.87e-09!130;UBERON:0003350!5.46e-08!9;UBERON:0004808!5.46e-08!9;UBERON:0001277!5.46e-08!9;UBERON:0004921!1.07e-07!126;UBERON:0004185!1.07e-07!126|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.80e-38,31;UBERON:0005409,6.53e-24,47;UBERON:0000344,1.47e-22,15;UBERON:0001242,4.10e-17,13;UBERON:0001262,4.10e-17,13;UBERON:0004786,4.10e-17,13;UBERON:0004923,7.59e-16,24;UBERON:0003350,8.26e-12,9;UBERON:0004808,8.26e-12,9;UBERON:0001277,8.26e-12,9;UBERON:0001007,1.88e-11,116;UBERON:0001555,1.88e-11,116;UBERON:0007026,1.88e-11,116;UBERON:0004119,3.57e-11,118;UBERON:0000925,3.57e-11,118;UBERON:0006595,3.57e-11,118;UBERON:0000485,1.51e-09,11;UBERON:0004921,2.76e-09,114;UBERON:0001962,1.07e-07,2;UBERON:0001961,1.07e-07,2;UBERON:0001744,1.07e-07,2;UBERON:0002108,5.44e-07,4|phase1_expression=0,13.2610654902957,14.1049764210756,5.44435580352294,6.01074875935617,1.17515490338323,1.16806320297763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.5594999043648,13.0763290208287,14.9300310669905,8.18447792702242,6.67960821326256,0.190023419456374,1.26015064879965,1.10865255327652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.75979933595425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45673551887624,0,0,0,0,0,0,0,0,1.73036477414062,0,0,0,0,0,0,0,0,1.78819938646014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.29544417878937,2.64450566663544,0,0,0,0,0.889512175379481,1.52180500890047,8.0669940462567,5.76446341534038,5.27803938480566,5.17286827306992,6.04388670069272,3.59527763461689,2.59365659849633,1.1948476395262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.549122826376163,1.43768206527355,0,0,0.252578877947112,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.32585463851399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.41257840585672,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0.218362563746178,0,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25347929989024,0,0.187283014939765,0,0.114870937911227,0,0.115884325944855,0,0,0,0.342869252385415,0,0.238436189947321,0.145346416632329,0,0.0846146078916765,0,0,0,0,0,0,0,0.154936841185966,0.192906610981141,0,0,0,0,0,0|short_description=p@chr9:46050715..46050725,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=191 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr9:46050715..46050725,+ | |||
|id=chr9:46050715..46050725,+ | |||
|ontology_enrichment_celltype=CL:0000239!1.96e-12!6;CL:0000677!1.96e-12!6;CL:0000212!1.96e-12!6;CL:0000584!1.96e-12!6;CL:0000075!1.58e-10!7;CL:0002563!5.46e-08!9;CL:0002251!5.46e-08!9;CL:0000473!1.38e-07!3;CL:0000627!1.38e-07!3;CL:0000682!1.38e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,5.13e-18,6;CL:0000677,5.13e-18,6;CL:0000584,5.13e-18,6;CL:0000075,2.34e-15,7;CL:0002563,8.26e-12,9;CL:0002251,8.26e-12,9;CL:0000066,8.29e-11,25;CL:0000682,1.10e-10,3;CL:0002076,7.85e-07,15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!1.01e-21!43;UBERON:0005409!3.40e-18!59;UBERON:0000344!1.55e-17!15;UBERON:0001242!8.44e-14!13;UBERON:0000060!8.44e-14!13;UBERON:0001262!8.44e-14!13;UBERON:0004786!8.44e-14!13;UBERON:0004923!1.11e-11!24;UBERON:0001007!3.19e-09!128;UBERON:0001555!3.19e-09!128;UBERON:0007026!3.19e-09!128;UBERON:0004119!5.87e-09!130;UBERON:0000925!5.87e-09!130;UBERON:0006595!5.87e-09!130;UBERON:0003350!5.46e-08!9;UBERON:0004808!5.46e-08!9;UBERON:0001277!5.46e-08!9;UBERON:0004921!1.07e-07!126;UBERON:0004185!1.07e-07!126 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.80e-38,31;UBERON:0005409,6.53e-24,47;UBERON:0000344,1.47e-22,15;UBERON:0001242,4.10e-17,13;UBERON:0001262,4.10e-17,13;UBERON:0004786,4.10e-17,13;UBERON:0004923,7.59e-16,24;UBERON:0003350,8.26e-12,9;UBERON:0004808,8.26e-12,9;UBERON:0001277,8.26e-12,9;UBERON:0001007,1.88e-11,116;UBERON:0001555,1.88e-11,116;UBERON:0007026,1.88e-11,116;UBERON:0004119,3.57e-11,118;UBERON:0000925,3.57e-11,118;UBERON:0006595,3.57e-11,118;UBERON:0000485,1.51e-09,11;UBERON:0004921,2.76e-09,114;UBERON:0001962,1.07e-07,2;UBERON:0001961,1.07e-07,2;UBERON:0001744,1.07e-07,2;UBERON:0002108,5.44e-07,4 | |||
|phase1_expression=0,13.2610654902957,14.1049764210756,5.44435580352294,6.01074875935617,1.17515490338323,1.16806320297763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.5594999043648,13.0763290208287,14.9300310669905,8.18447792702242,6.67960821326256,0.190023419456374,1.26015064879965,1.10865255327652,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.75979933595425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45673551887624,0,0,0,0,0,0,0,0,1.73036477414062,0,0,0,0,0,0,0,0,1.78819938646014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.29544417878937,2.64450566663544,0,0,0,0,0.889512175379481,1.52180500890047,8.0669940462567,5.76446341534038,5.27803938480566,5.17286827306992,6.04388670069272,3.59527763461689,2.59365659849633,1.1948476395262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.549122826376163,1.43768206527355,0,0,0.252578877947112,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.32585463851399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.41257840585672,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0,0.218362563746178,0,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25347929989024,0,0.187283014939765,0,0.114870937911227,0,0.115884325944855,0,0,0,0.342869252385415,0,0.238436189947321,0.145346416632329,0,0.0846146078916765,0,0,0,0,0,0,0,0.154936841185966,0.192906610981141,0,0,0,0,0,0 | |||
|short_description=p@chr9:46050715..46050725,+ | |||
}} |
Revision as of 18:04, 14 September 2013
Short description: | p@chr9:46050715..46050725, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr9:46050715..46050725, + |
Coexpression cluster: | MCL_coexpression_mm9:191 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 5.13e-18 | 6 |
gut absorptive cell | 5.13e-18 | 6 |
enterocyte | 5.13e-18 | 6 |
columnar/cuboidal epithelial cell | 2.34e-15 | 7 |
intestinal epithelial cell | 8.26e-12 | 9 |
epithelial cell of alimentary canal | 8.26e-12 | 9 |
epithelial cell | 8.29e-11 | 25 |
M cell of gut | 1.10e-10 | 3 |
endo-epithelial cell | 7.85e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.80e-38 | 31 |
gastrointestinal system | 6.53e-24 | 47 |
mucosa | 1.47e-22 | 15 |
intestinal mucosa | 4.10e-17 | 13 |
wall of intestine | 4.10e-17 | 13 |
gastrointestinal system mucosa | 4.10e-17 | 13 |
organ component layer | 7.59e-16 | 24 |
epithelium of mucosa | 8.26e-12 | 9 |
gastrointestinal system epithelium | 8.26e-12 | 9 |
intestinal epithelium | 8.26e-12 | 9 |
digestive system | 1.88e-11 | 116 |
digestive tract | 1.88e-11 | 116 |
primitive gut | 1.88e-11 | 116 |
endoderm-derived structure | 3.57e-11 | 118 |
endoderm | 3.57e-11 | 118 |
presumptive endoderm | 3.57e-11 | 118 |
simple columnar epithelium | 1.51e-09 | 11 |
subdivision of digestive tract | 2.76e-09 | 114 |
gut-associated lymphoid tissue | 1.07e-07 | 2 |
mucosa-associated lymphoid tissue | 1.07e-07 | 2 |
lymphoid tissue | 1.07e-07 | 2 |
small intestine | 5.44e-07 | 4 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.