FFCP PHASE1:Mm9::chr9:46050633..46050670,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=191|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr9:46050633..46050670,+|id=chr9:46050633..46050670,+|ontology_enrichment_celltype=CL:0000239!1.05e-08!6;CL:0000677!1.05e-08!6;CL:0000212!1.05e-08!6;CL:0000584!1.05e-08!6;CL:0002563!2.12e-08!9;CL:0002251!2.12e-08!9;CL:0000075!2.83e-07!7|ontology_enrichment_celltype_v019_2=CL:0000239,5.62e-14,6;CL:0000677,5.62e-14,6;CL:0000584,5.62e-14,6;CL:0000075,7.24e-12,7;CL:0002563,4.72e-09,9;CL:0002251,4.72e-09,9;CL:0000682,2.02e-08,3;CL:0000066,8.14e-08,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!1.03e-17!43;UBERON:0005409!2.04e-15!59;UBERON:0000344!2.84e-15!15;UBERON:0001242!1.31e-12!13;UBERON:0000060!1.31e-12!13;UBERON:0001262!1.31e-12!13;UBERON:0004786!1.31e-12!13;UBERON:0004923!1.53e-10!24;UBERON:0003350!2.12e-08!9;UBERON:0004808!2.12e-08!9;UBERON:0001277!2.12e-08!9;UBERON:0004119!8.76e-07!130;UBERON:0000925!8.76e-07!130;UBERON:0006595!8.76e-07!130|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.41e-34,31;UBERON:0005409,7.86e-23,47;UBERON:0000344,2.55e-20,15;UBERON:0001242,6.31e-16,13;UBERON:0001262,6.31e-16,13;UBERON:0004786,6.31e-16,13;UBERON:0004923,9.19e-14,24;UBERON:0001007,3.34e-10,116;UBERON:0001555,3.34e-10,116;UBERON:0007026,3.34e-10,116;UBERON:0004119,6.47e-10,118;UBERON:0000925,6.47e-10,118;UBERON:0006595,6.47e-10,118;UBERON:0003350,4.72e-09,9;UBERON:0004808,4.72e-09,9;UBERON:0001277,4.72e-09,9;UBERON:0002108,6.65e-09,4;UBERON:0004921,2.04e-08,114;UBERON:0000485,2.91e-07,11;UBERON:0000331,9.07e-07,3;UBERON:0002116,9.07e-07,3;UBERON:0001204,9.07e-07,3;UBERON:0001168,9.07e-07,3|phase1_expression=0,47.8096308465925,71.4348805841572,20.8700305801713,23.5420993074783,6.37941233265181,11.4470193891808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,71.0366357202726,97.0401258914129,59.7201242679621,41.7839136274303,40.2931205122612,2.47030445293286,1.51218077855958,10.6430645114546,0,0,0,0.288851619751275,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.7191686775248,0.539703191637817,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,2.8545969929765,0,0.148442139064825,0,0,0,0,0,0,10.6293836125781,0,0,0,0,0,0,0,0,5.8755122697976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,35.0243909962826,21.6849464664106,0,0,0,0.80673409849337,4.89231696458715,10.2721838100782,30.8443890003933,37.5513616770745,35.6895996496383,26.8591237255554,27.2949721966768,27.8634016682809,15.1296634912286,10.3553462092271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.648540907100142,2.19649130550465,2.87536413054709,0,0,0,0.179397413521912,0.482443521363367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307435147943927,5.16856586336442,0,0,0,0,0,0,0,0,0,0.177340233642274,0,0,0,0,0.21183207086382,0,0,0,0,0,0,32.3543728659134,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324016022465404,0.209088296014469,2.40198820120795,0.269728692769641,0.330613822901344,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.888986911206461,0,0.64183841918363,0,1.2673964994512,0.188626341386076,0.749132059759059,0.256100609619477,0.459483751644906,0.952587382566147,0.695305955669133,0.38581844092741,0.412085900803307,0.588795680537589,1.37147700954166,0.532427418478012,1.1921809497366,0.145346416632329,0.282328141245992,0.25384382367503,0.182927972872773,0.789209134313529,0.814824683075171,1.68342681497322,0.355905054372522,0.689531376628944,1.22769312950907,0.154936841185966,0.192906610981141,0,0.233931608445408,1.71896843238639,0,0,0|short_description=p@chr9:46050633..46050670,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=191 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr9:46050633..46050670,+ | |||
|id=chr9:46050633..46050670,+ | |||
|ontology_enrichment_celltype=CL:0000239!1.05e-08!6;CL:0000677!1.05e-08!6;CL:0000212!1.05e-08!6;CL:0000584!1.05e-08!6;CL:0002563!2.12e-08!9;CL:0002251!2.12e-08!9;CL:0000075!2.83e-07!7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,5.62e-14,6;CL:0000677,5.62e-14,6;CL:0000584,5.62e-14,6;CL:0000075,7.24e-12,7;CL:0002563,4.72e-09,9;CL:0002251,4.72e-09,9;CL:0000682,2.02e-08,3;CL:0000066,8.14e-08,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!1.03e-17!43;UBERON:0005409!2.04e-15!59;UBERON:0000344!2.84e-15!15;UBERON:0001242!1.31e-12!13;UBERON:0000060!1.31e-12!13;UBERON:0001262!1.31e-12!13;UBERON:0004786!1.31e-12!13;UBERON:0004923!1.53e-10!24;UBERON:0003350!2.12e-08!9;UBERON:0004808!2.12e-08!9;UBERON:0001277!2.12e-08!9;UBERON:0004119!8.76e-07!130;UBERON:0000925!8.76e-07!130;UBERON:0006595!8.76e-07!130 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.41e-34,31;UBERON:0005409,7.86e-23,47;UBERON:0000344,2.55e-20,15;UBERON:0001242,6.31e-16,13;UBERON:0001262,6.31e-16,13;UBERON:0004786,6.31e-16,13;UBERON:0004923,9.19e-14,24;UBERON:0001007,3.34e-10,116;UBERON:0001555,3.34e-10,116;UBERON:0007026,3.34e-10,116;UBERON:0004119,6.47e-10,118;UBERON:0000925,6.47e-10,118;UBERON:0006595,6.47e-10,118;UBERON:0003350,4.72e-09,9;UBERON:0004808,4.72e-09,9;UBERON:0001277,4.72e-09,9;UBERON:0002108,6.65e-09,4;UBERON:0004921,2.04e-08,114;UBERON:0000485,2.91e-07,11;UBERON:0000331,9.07e-07,3;UBERON:0002116,9.07e-07,3;UBERON:0001204,9.07e-07,3;UBERON:0001168,9.07e-07,3 | |||
|phase1_expression=0,47.8096308465925,71.4348805841572,20.8700305801713,23.5420993074783,6.37941233265181,11.4470193891808,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,71.0366357202726,97.0401258914129,59.7201242679621,41.7839136274303,40.2931205122612,2.47030445293286,1.51218077855958,10.6430645114546,0,0,0,0.288851619751275,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,19.7191686775248,0.539703191637817,0,0,0.421333260395256,0,0,0,0,0,0,0,0,0,0,2.8545969929765,0,0.148442139064825,0,0,0,0,0,0,10.6293836125781,0,0,0,0,0,0,0,0,5.8755122697976,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,35.0243909962826,21.6849464664106,0,0,0,0.80673409849337,4.89231696458715,10.2721838100782,30.8443890003933,37.5513616770745,35.6895996496383,26.8591237255554,27.2949721966768,27.8634016682809,15.1296634912286,10.3553462092271,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.648540907100142,2.19649130550465,2.87536413054709,0,0,0,0.179397413521912,0.482443521363367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307435147943927,5.16856586336442,0,0,0,0,0,0,0,0,0,0.177340233642274,0,0,0,0,0.21183207086382,0,0,0,0,0,0,32.3543728659134,0,0,0,0,0,0,0,0,0,0,0,0,0,0.324016022465404,0.209088296014469,2.40198820120795,0.269728692769641,0.330613822901344,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.888986911206461,0,0.64183841918363,0,1.2673964994512,0.188626341386076,0.749132059759059,0.256100609619477,0.459483751644906,0.952587382566147,0.695305955669133,0.38581844092741,0.412085900803307,0.588795680537589,1.37147700954166,0.532427418478012,1.1921809497366,0.145346416632329,0.282328141245992,0.25384382367503,0.182927972872773,0.789209134313529,0.814824683075171,1.68342681497322,0.355905054372522,0.689531376628944,1.22769312950907,0.154936841185966,0.192906610981141,0,0.233931608445408,1.71896843238639,0,0,0 | |||
|short_description=p@chr9:46050633..46050670,+ | |||
}} |
Revision as of 18:04, 14 September 2013
Short description: | p@chr9:46050633..46050670, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr9:46050633..46050670, + |
Coexpression cluster: | MCL_coexpression_mm9:191 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 5.62e-14 | 6 |
gut absorptive cell | 5.62e-14 | 6 |
enterocyte | 5.62e-14 | 6 |
columnar/cuboidal epithelial cell | 7.24e-12 | 7 |
intestinal epithelial cell | 4.72e-09 | 9 |
epithelial cell of alimentary canal | 4.72e-09 | 9 |
M cell of gut | 2.02e-08 | 3 |
epithelial cell | 8.14e-08 | 25 |
Ontology term | p-value | n |
---|---|---|
intestine | 1.41e-34 | 31 |
gastrointestinal system | 7.86e-23 | 47 |
mucosa | 2.55e-20 | 15 |
intestinal mucosa | 6.31e-16 | 13 |
wall of intestine | 6.31e-16 | 13 |
gastrointestinal system mucosa | 6.31e-16 | 13 |
organ component layer | 9.19e-14 | 24 |
digestive system | 3.34e-10 | 116 |
digestive tract | 3.34e-10 | 116 |
primitive gut | 3.34e-10 | 116 |
endoderm-derived structure | 6.47e-10 | 118 |
endoderm | 6.47e-10 | 118 |
presumptive endoderm | 6.47e-10 | 118 |
epithelium of mucosa | 4.72e-09 | 9 |
gastrointestinal system epithelium | 4.72e-09 | 9 |
intestinal epithelium | 4.72e-09 | 9 |
small intestine | 6.65e-09 | 4 |
subdivision of digestive tract | 2.04e-08 | 114 |
simple columnar epithelium | 2.91e-07 | 11 |
ileal mucosa | 9.07e-07 | 3 |
ileum | 9.07e-07 | 3 |
mucosa of small intestine | 9.07e-07 | 3 |
wall of small intestine | 9.07e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.