FFCP PHASE1:Mm9::chr6:78417510..78417520,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=219|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr6:78417510..78417520,-|id=chr6:78417510..78417520,-|ontology_enrichment_celltype=CL:0000239!6.57e-15!6;CL:0000677!6.57e-15!6;CL:0000212!6.57e-15!6;CL:0000584!6.57e-15!6;CL:0000075!9.58e-13!7;CL:0000473!4.28e-12!3;CL:0000627!4.28e-12!3;CL:0000682!4.28e-12!3;CL:0002563!7.46e-10!9;CL:0002251!7.46e-10!9;CL:0000066!2.88e-08!25|ontology_enrichment_celltype_v019_2=CL:0000682,1.11e-21,3;CL:0000239,4.10e-18,6;CL:0000677,4.10e-18,6;CL:0000584,4.10e-18,6;CL:0000075,1.41e-15,7;CL:0000066,6.43e-13,25;CL:0002563,3.47e-12,9;CL:0002251,3.47e-12,9;CL:0000473,1.22e-09,7;CL:0002076,2.07e-07,15|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!3.67e-27!15;UBERON:0001242!3.48e-21!13;UBERON:0000060!3.48e-21!13;UBERON:0001262!3.48e-21!13;UBERON:0004786!3.48e-21!13;UBERON:0004923!3.23e-16!24;UBERON:0000160!1.18e-15!43;UBERON:0000331!8.28e-12!3;UBERON:0002116!8.28e-12!3;UBERON:0001204!8.28e-12!3;UBERON:0001168!8.28e-12!3;UBERON:0005409!1.31e-10!59;UBERON:0003350!7.46e-10!9;UBERON:0004808!7.46e-10!9;UBERON:0001277!7.46e-10!9;UBERON:0001007!4.72e-08!128;UBERON:0001555!4.72e-08!128;UBERON:0007026!4.72e-08!128;UBERON:0001962!5.10e-08!2;UBERON:0001961!5.10e-08!2;UBERON:0001744!5.10e-08!2;UBERON:0000485!5.21e-08!11;UBERON:0004119!7.25e-08!130;UBERON:0000925!7.25e-08!130;UBERON:0006595!7.25e-08!130|ontology_enrichment_uberon_v019_2=UBERON:0000344,5.37e-28,15;UBERON:0001242,1.22e-18,13;UBERON:0001262,1.22e-18,13;UBERON:0004786,1.22e-18,13;UBERON:0004923,2.74e-17,24;UBERON:0001962,6.74e-14,2;UBERON:0001961,6.74e-14,2;UBERON:0001744,6.74e-14,2;UBERON:0000160,2.23e-13,31;UBERON:0003350,3.47e-12,9;UBERON:0004808,3.47e-12,9;UBERON:0001277,3.47e-12,9;UBERON:0000331,1.95e-10,3;UBERON:0002116,1.95e-10,3;UBERON:0001204,1.95e-10,3;UBERON:0001168,1.95e-10,3;UBERON:0000485,5.07e-10,11;UBERON:0002465,1.40e-09,3;UBERON:0005409,1.39e-08,47;UBERON:0002108,4.82e-08,4;UBERON:0003199,1.05e-07,1|phase1_expression=0,1.74487703819681,4.09499315450582,0,2.00358291978539,0.671517087647559,1.40167584357315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43993180514066,1.14704640533585,8.6134794617253,6.8921919385452,3.66301095566011,6.08074942260396,0.756090389279792,15.5211357458713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510914110417183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.660837565967596,2.3800550999719,0,0,0,0,0,0,0.474529061544512,0,0,0,0,1.79763881730844,0.432276099749388,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163863314715738,0.172684981865896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100966449948148,0,0,0,0,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr6:78417510..78417520,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=219 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr6:78417510..78417520,- | |||
|id=chr6:78417510..78417520,- | |||
|ontology_enrichment_celltype=CL:0000239!6.57e-15!6;CL:0000677!6.57e-15!6;CL:0000212!6.57e-15!6;CL:0000584!6.57e-15!6;CL:0000075!9.58e-13!7;CL:0000473!4.28e-12!3;CL:0000627!4.28e-12!3;CL:0000682!4.28e-12!3;CL:0002563!7.46e-10!9;CL:0002251!7.46e-10!9;CL:0000066!2.88e-08!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,1.11e-21,3;CL:0000239,4.10e-18,6;CL:0000677,4.10e-18,6;CL:0000584,4.10e-18,6;CL:0000075,1.41e-15,7;CL:0000066,6.43e-13,25;CL:0002563,3.47e-12,9;CL:0002251,3.47e-12,9;CL:0000473,1.22e-09,7;CL:0002076,2.07e-07,15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!3.67e-27!15;UBERON:0001242!3.48e-21!13;UBERON:0000060!3.48e-21!13;UBERON:0001262!3.48e-21!13;UBERON:0004786!3.48e-21!13;UBERON:0004923!3.23e-16!24;UBERON:0000160!1.18e-15!43;UBERON:0000331!8.28e-12!3;UBERON:0002116!8.28e-12!3;UBERON:0001204!8.28e-12!3;UBERON:0001168!8.28e-12!3;UBERON:0005409!1.31e-10!59;UBERON:0003350!7.46e-10!9;UBERON:0004808!7.46e-10!9;UBERON:0001277!7.46e-10!9;UBERON:0001007!4.72e-08!128;UBERON:0001555!4.72e-08!128;UBERON:0007026!4.72e-08!128;UBERON:0001962!5.10e-08!2;UBERON:0001961!5.10e-08!2;UBERON:0001744!5.10e-08!2;UBERON:0000485!5.21e-08!11;UBERON:0004119!7.25e-08!130;UBERON:0000925!7.25e-08!130;UBERON:0006595!7.25e-08!130 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,5.37e-28,15;UBERON:0001242,1.22e-18,13;UBERON:0001262,1.22e-18,13;UBERON:0004786,1.22e-18,13;UBERON:0004923,2.74e-17,24;UBERON:0001962,6.74e-14,2;UBERON:0001961,6.74e-14,2;UBERON:0001744,6.74e-14,2;UBERON:0000160,2.23e-13,31;UBERON:0003350,3.47e-12,9;UBERON:0004808,3.47e-12,9;UBERON:0001277,3.47e-12,9;UBERON:0000331,1.95e-10,3;UBERON:0002116,1.95e-10,3;UBERON:0001204,1.95e-10,3;UBERON:0001168,1.95e-10,3;UBERON:0000485,5.07e-10,11;UBERON:0002465,1.40e-09,3;UBERON:0005409,1.39e-08,47;UBERON:0002108,4.82e-08,4;UBERON:0003199,1.05e-07,1 | |||
|phase1_expression=0,1.74487703819681,4.09499315450582,0,2.00358291978539,0.671517087647559,1.40167584357315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.43993180514066,1.14704640533585,8.6134794617253,6.8921919385452,3.66301095566011,6.08074942260396,0.756090389279792,15.5211357458713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.510914110417183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.660837565967596,2.3800550999719,0,0,0,0,0,0,0.474529061544512,0,0,0,0,1.79763881730844,0.432276099749388,0.199141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163863314715738,0.172684981865896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100966449948148,0,0,0,0,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr6:78417510..78417520,- | |||
}} |
Revision as of 10:40, 14 September 2013
Short description: | p@chr6:78417510..78417520, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr6:78417510..78417520, - |
Coexpression cluster: | MCL_coexpression_mm9:219 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 1.11e-21 | 3 |
brush border epithelial cell | 4.10e-18 | 6 |
gut absorptive cell | 4.10e-18 | 6 |
enterocyte | 4.10e-18 | 6 |
columnar/cuboidal epithelial cell | 1.41e-15 | 7 |
epithelial cell | 6.43e-13 | 25 |
intestinal epithelial cell | 3.47e-12 | 9 |
epithelial cell of alimentary canal | 3.47e-12 | 9 |
defensive cell | 1.22e-09 | 7 |
endo-epithelial cell | 2.07e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
mucosa | 5.37e-28 | 15 |
intestinal mucosa | 1.22e-18 | 13 |
wall of intestine | 1.22e-18 | 13 |
gastrointestinal system mucosa | 1.22e-18 | 13 |
organ component layer | 2.74e-17 | 24 |
gut-associated lymphoid tissue | 6.74e-14 | 2 |
mucosa-associated lymphoid tissue | 6.74e-14 | 2 |
lymphoid tissue | 6.74e-14 | 2 |
intestine | 2.23e-13 | 31 |
epithelium of mucosa | 3.47e-12 | 9 |
gastrointestinal system epithelium | 3.47e-12 | 9 |
intestinal epithelium | 3.47e-12 | 9 |
ileal mucosa | 1.95e-10 | 3 |
ileum | 1.95e-10 | 3 |
mucosa of small intestine | 1.95e-10 | 3 |
wall of small intestine | 1.95e-10 | 3 |
simple columnar epithelium | 5.07e-10 | 11 |
lymphoid system | 1.40e-09 | 3 |
gastrointestinal system | 1.39e-08 | 47 |
small intestine | 4.82e-08 | 4 |
egg chamber | 1.05e-07 | 1 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.