FFCP PHASE1:Hg19::chr9:136605060..136605082,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1757|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10536|TSSclassifier=W|UniProt=F5H600,B4DPI2,F5GZ26,Q9UL12|association_with_transcript=0bp_to_ENST00000393050,ENST00000422262,ENST00000539227,NM_007101,uc004ceo.2,uc011mdn.1,uc011mdo.1_5end|coexpression_cluster_id=C5|description=CAGE_peak_2_at_SARDH_5end|id=chr9:136605060..136605082,-|ontology_enrichment_celltype=CL:0000181!2.78e-25!12;CL:0000417!2.78e-25!12;CL:0000668!2.78e-25!12;CL:0000414!2.78e-25!12;CL:0000412!2.78e-25!12;CL:0000182!2.78e-25!12;CL:0000223!2.78e-10!59;CL:0002563!3.30e-09!4|ontology_enrichment_celltype_v019=CL:0000182;2.09e-42;12!CL:0000047;3.08e-08;2|ontology_enrichment_celltype_v019_2=CL:0000182,2.09e-42,12;CL:0000223,1.54e-11,58|ontology_enrichment_development_v019=UBERON:0004161;3.11e-32;11!UBERON:0009497;2.66e-27;13!UBERON:0001041;7.20e-12;30!UBERON:0003104;1.81e-11;31!CL:0000223;9.29e-09;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002107!7.35e-28!19;UBERON:0006925!7.35e-28!19;UBERON:0008836!7.35e-28!19;UBERON:0005057!3.42e-25!26;UBERON:0008835!6.31e-24!22;UBERON:0003894!6.31e-24!22;UBERON:0009854!7.65e-23!23;UBERON:0007499!6.20e-21!25;UBERON:0009497!6.20e-21!25;UBERON:0000015!6.20e-21!25;UBERON:0002423!6.20e-21!25;UBERON:0006235!6.20e-21!25;UBERON:0004161!6.20e-21!25;UBERON:0009856!4.33e-20!26;UBERON:0003929!3.62e-17!54;UBERON:0005172!8.82e-17!55;UBERON:0005173!8.82e-17!55;UBERON:0002365!1.10e-16!31;UBERON:0002330!1.10e-16!31;UBERON:0002417!5.94e-15!61;UBERON:0000916!5.94e-15!61;UBERON:0002368!1.17e-14!35;UBERON:0000949!3.65e-11!45;UBERON:0005911!1.10e-10!82;UBERON:0002530!2.14e-10!59;UBERON:0002146!1.91e-09!1;UBERON:0005623!1.91e-09!1;UBERON:0001242!3.30e-09!4;UBERON:0001262!3.30e-09!4;UBERON:0004786!3.30e-09!4;UBERON:0004808!3.30e-09!4;UBERON:0001277!3.30e-09!4;UBERON:0004921!1.13e-08!129;UBERON:0004185!1.13e-08!129;UBERON:0005177!9.62e-08!107;UBERON:0003350!1.55e-07!5;UBERON:0009569!3.09e-07!113;UBERON:0001007!7.46e-07!155;UBERON:0001555!7.46e-07!155;UBERON:0007026!7.46e-07!155|ontology_enrichment_uberon_v019=UBERON:0002107;2.89e-47;19!UBERON:0006925;2.89e-47;19!UBERON:0002423;8.28e-36;25!UBERON:0002365;1.07e-27;31!UBERON:0002330;1.07e-27;31!UBERON:0002368;2.02e-24;33!UBERON:0000949;7.07e-18;43!UBERON:0005172;1.00e-10;52!UBERON:0005173;1.00e-10;52!UBERON:0002417;1.95e-09;58!UBERON:0000916;1.95e-09;58!UBERON:0002530;2.56e-09;57!UBERON:0001007;1.33e-08;81|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.89e-47,19;UBERON:0006925,2.89e-47,19;UBERON:0008836,2.89e-47,19;UBERON:0008835,9.30e-41,22;UBERON:0003894,9.30e-41,22;UBERON:0009854,5.77e-39,23;UBERON:0007499,8.28e-36,25;UBERON:0009497,8.28e-36,25;UBERON:0000015,8.28e-36,25;UBERON:0002423,8.28e-36,25;UBERON:0006235,8.28e-36,25;UBERON:0004161,8.28e-36,25;UBERON:0009856,2.06e-34,26;UBERON:0002365,8.90e-29,31;UBERON:0002330,8.90e-29,31;UBERON:0002368,2.00e-25,35;UBERON:0003929,1.65e-20,54;UBERON:0000949,1.21e-19,45;UBERON:0005172,2.91e-16,54;UBERON:0005173,2.91e-16,54;UBERON:0002530,7.92e-15,59;UBERON:0002417,1.44e-14,60;UBERON:0000916,1.44e-14,60;UBERON:0005911,3.21e-13,82;UBERON:0001041,7.95e-10,87;UBERON:0004921,8.00e-09,118;UBERON:0005177,2.33e-08,101;UBERON:0009569,1.84e-07,112;UBERON:0003914,4.16e-07,117;UBERON:0001007,5.19e-07,145;UBERON:0001555,5.19e-07,145;UBERON:0007026,5.19e-07,145;UBERON:0000490,6.66e-07,148;UBERON:0005256,8.77e-07,122|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29213382120997,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,144.500739696887,19.6565443335525,105.751393295971,0,2.33678033231916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,39.1555844261345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,35.8687880959529,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.90799823828566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,8.11466777764404,8.15916997973548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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1757 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10536 | |||
|TSSclassifier=W | |||
|UniProt=F5H600,B4DPI2,F5GZ26,Q9UL12 | |||
|association_with_transcript=0bp_to_ENST00000393050,ENST00000422262,ENST00000539227,NM_007101,uc004ceo.2,uc011mdn.1,uc011mdo.1_5end | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_2_at_SARDH_5end | |||
|id=chr9:136605060..136605082,- | |||
|ontology_enrichment_celltype=CL:0000181!2.78e-25!12;CL:0000417!2.78e-25!12;CL:0000668!2.78e-25!12;CL:0000414!2.78e-25!12;CL:0000412!2.78e-25!12;CL:0000182!2.78e-25!12;CL:0000223!2.78e-10!59;CL:0002563!3.30e-09!4 | |||
|ontology_enrichment_celltype_v019=CL:0000182;2.09e-42;12!CL:0000047;3.08e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,2.09e-42,12;CL:0000223,1.54e-11,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;3.11e-32;11!UBERON:0009497;2.66e-27;13!UBERON:0001041;7.20e-12;30!UBERON:0003104;1.81e-11;31!CL:0000223;9.29e-09;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!7.35e-28!19;UBERON:0006925!7.35e-28!19;UBERON:0008836!7.35e-28!19;UBERON:0005057!3.42e-25!26;UBERON:0008835!6.31e-24!22;UBERON:0003894!6.31e-24!22;UBERON:0009854!7.65e-23!23;UBERON:0007499!6.20e-21!25;UBERON:0009497!6.20e-21!25;UBERON:0000015!6.20e-21!25;UBERON:0002423!6.20e-21!25;UBERON:0006235!6.20e-21!25;UBERON:0004161!6.20e-21!25;UBERON:0009856!4.33e-20!26;UBERON:0003929!3.62e-17!54;UBERON:0005172!8.82e-17!55;UBERON:0005173!8.82e-17!55;UBERON:0002365!1.10e-16!31;UBERON:0002330!1.10e-16!31;UBERON:0002417!5.94e-15!61;UBERON:0000916!5.94e-15!61;UBERON:0002368!1.17e-14!35;UBERON:0000949!3.65e-11!45;UBERON:0005911!1.10e-10!82;UBERON:0002530!2.14e-10!59;UBERON:0002146!1.91e-09!1;UBERON:0005623!1.91e-09!1;UBERON:0001242!3.30e-09!4;UBERON:0001262!3.30e-09!4;UBERON:0004786!3.30e-09!4;UBERON:0004808!3.30e-09!4;UBERON:0001277!3.30e-09!4;UBERON:0004921!1.13e-08!129;UBERON:0004185!1.13e-08!129;UBERON:0005177!9.62e-08!107;UBERON:0003350!1.55e-07!5;UBERON:0009569!3.09e-07!113;UBERON:0001007!7.46e-07!155;UBERON:0001555!7.46e-07!155;UBERON:0007026!7.46e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;2.89e-47;19!UBERON:0006925;2.89e-47;19!UBERON:0002423;8.28e-36;25!UBERON:0002365;1.07e-27;31!UBERON:0002330;1.07e-27;31!UBERON:0002368;2.02e-24;33!UBERON:0000949;7.07e-18;43!UBERON:0005172;1.00e-10;52!UBERON:0005173;1.00e-10;52!UBERON:0002417;1.95e-09;58!UBERON:0000916;1.95e-09;58!UBERON:0002530;2.56e-09;57!UBERON:0001007;1.33e-08;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.89e-47,19;UBERON:0006925,2.89e-47,19;UBERON:0008836,2.89e-47,19;UBERON:0008835,9.30e-41,22;UBERON:0003894,9.30e-41,22;UBERON:0009854,5.77e-39,23;UBERON:0007499,8.28e-36,25;UBERON:0009497,8.28e-36,25;UBERON:0000015,8.28e-36,25;UBERON:0002423,8.28e-36,25;UBERON:0006235,8.28e-36,25;UBERON:0004161,8.28e-36,25;UBERON:0009856,2.06e-34,26;UBERON:0002365,8.90e-29,31;UBERON:0002330,8.90e-29,31;UBERON:0002368,2.00e-25,35;UBERON:0003929,1.65e-20,54;UBERON:0000949,1.21e-19,45;UBERON:0005172,2.91e-16,54;UBERON:0005173,2.91e-16,54;UBERON:0002530,7.92e-15,59;UBERON:0002417,1.44e-14,60;UBERON:0000916,1.44e-14,60;UBERON:0005911,3.21e-13,82;UBERON:0001041,7.95e-10,87;UBERON:0004921,8.00e-09,118;UBERON:0005177,2.33e-08,101;UBERON:0009569,1.84e-07,112;UBERON:0003914,4.16e-07,117;UBERON:0001007,5.19e-07,145;UBERON:0001555,5.19e-07,145;UBERON:0007026,5.19e-07,145;UBERON:0000490,6.66e-07,148;UBERON:0005256,8.77e-07,122 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.29213382120997,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,144.500739696887,19.6565443335525,105.751393295971,0,2.33678033231916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,39.1555844261345,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,35.8687880959529,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.90799823828566,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282706142867882,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0,0,0,0.0671834724867263,0,0,8.11466777764404,8.15916997973548,9.57130322729425,0,0,0,0,0,0,0,0,0,0,0,0.630445658393585,0.419636705079985,0,0,0,0,0,0,0,0,0,0,0,0,0,59.2071024059453,29.1515155606887,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121917924982269,0,0,0,0,0,0,0,0,0,0,0,0.437119121007915,0,0,0,0,0,0,0,0,0.0644578879735772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@SARDH | |||
}} |
Revision as of 08:03, 14 September 2013
Short description: | p2@SARDH |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_SARDH_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 0bp_to_ENST00000393050, ENST00000422262, ENST00000539227, NM_007101, uc004ceo.2, uc011mdn.1, uc011mdo.1_5end |
EntrezGene: | SARDH |
HGNC: | 10536 |
UniProt: | F5H600B4DPI2F5GZ26Q9UL12 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 2.09e-42 | 12 |
endodermal cell | 1.54e-11 | 58 |
Ontology term | p-value | n |
---|---|---|
liver | 2.89e-47 | 19 |
digestive gland | 2.89e-47 | 19 |
liver bud | 2.89e-47 | 19 |
hepatic diverticulum | 9.30e-41 | 22 |
liver primordium | 9.30e-41 | 22 |
digestive tract diverticulum | 5.77e-39 | 23 |
epithelial sac | 8.28e-36 | 25 |
epithelium of foregut-midgut junction | 8.28e-36 | 25 |
anatomical boundary | 8.28e-36 | 25 |
hepatobiliary system | 8.28e-36 | 25 |
foregut-midgut junction | 8.28e-36 | 25 |
septum transversum | 8.28e-36 | 25 |
sac | 2.06e-34 | 26 |
exocrine gland | 8.90e-29 | 31 |
exocrine system | 8.90e-29 | 31 |
endocrine gland | 2.00e-25 | 35 |
gut epithelium | 1.65e-20 | 54 |
endocrine system | 1.21e-19 | 45 |
abdomen element | 2.91e-16 | 54 |
abdominal segment element | 2.91e-16 | 54 |
gland | 7.92e-15 | 59 |
abdominal segment of trunk | 1.44e-14 | 60 |
abdomen | 1.44e-14 | 60 |
endo-epithelium | 3.21e-13 | 82 |
foregut | 7.95e-10 | 87 |
subdivision of digestive tract | 8.00e-09 | 118 |
trunk region element | 2.33e-08 | 101 |
subdivision of trunk | 1.84e-07 | 112 |
epithelial tube | 4.16e-07 | 117 |
digestive system | 5.19e-07 | 145 |
digestive tract | 5.19e-07 | 145 |
primitive gut | 5.19e-07 | 145 |
unilaminar epithelium | 6.66e-07 | 148 |
trunk mesenchyme | 8.77e-07 | 122 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.