FFCP PHASE1:Hg19::chr9:131445783..131445798,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6418|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10760|TSSclassifier=W|UniProt=Q01105,Q5VXV3|association_with_transcript=-135bp_to_ENST00000372692,NM_001122821,uc004bvt.3_5end|description=CAGE_peak_8_at_SET_5end|id=chr9:131445783..131445798,+|ontology_enrichment_celltype=CL:0000066!1.15e-40!254;CL:0000223!2.60e-16!59;CL:0002076!7.97e-15!43;CL:0000220!2.51e-10!246;CL:0002321!4.20e-10!248;CL:0002251!7.94e-09!21;CL:0000076!3.33e-08!62;CL:0000077!4.30e-08!19|ontology_enrichment_celltype_v019=CL:0002076;7.58e-15;42!CL:0000077;8.05e-11;19!CL:0002251;2.08e-10;20!CL:0002368;1.74e-07;13|ontology_enrichment_celltype_v019_2=CL:0000066,5.41e-40,253;CL:0000223,6.41e-20,58;CL:0002076,1.93e-18,42;CL:0000076,6.79e-12,63;CL:0000077,6.19e-11,19;CL:0002251,1.28e-10,20;CL:0002368,1.68e-07,13|ontology_enrichment_development_v019=CL:0000223;1.39e-09;58!UBERON:0008947;8.92e-09;29|ontology_enrichment_disease=DOID:305!1.46e-20!106;DOID:0050687!1.37e-17!143;DOID:162!5.95e-09!235;DOID:14566!6.32e-09!239;DOID:1749!5.42e-08!14;DOID:299!7.14e-07!25|ontology_enrichment_disease_v019=DOID:1749;4.27e-12;14|ontology_enrichment_disease_v019_2=DOID:305,4.83e-23,106;DOID:0050687,6.70e-18,143;DOID:1749,6.28e-12,14;DOID:162,4.93e-10,235;DOID:14566,2.06e-09,239|ontology_enrichment_uberon=UBERON:0004119!4.05e-22!169;UBERON:0000925!4.05e-22!169;UBERON:0006595!4.05e-22!169;UBERON:0001007!3.45e-20!155;UBERON:0001555!3.45e-20!155;UBERON:0007026!3.45e-20!155;UBERON:0004921!2.54e-17!129;UBERON:0004185!2.54e-17!129;UBERON:0000077!3.18e-16!130;UBERON:0001041!3.34e-14!98;UBERON:0001004!2.82e-13!72;UBERON:0003104!1.49e-12!238;UBERON:0009142!1.49e-12!238;UBERON:0000466!5.51e-11!126;UBERON:0001048!8.38e-11!168;UBERON:0005911!9.82e-11!82;UBERON:0008947!2.85e-10!38;UBERON:0003258!2.85e-10!38;UBERON:0000065!3.49e-10!53;UBERON:0000481!5.20e-10!347;UBERON:0005177!1.98e-09!107;UBERON:0002100!2.08e-09!216;UBERON:0000464!7.21e-09!104;UBERON:0009569!1.04e-08!113;UBERON:0002530!2.77e-08!59;UBERON:0005153!2.83e-08!37;UBERON:0003929!5.17e-08!54;UBERON:0000063!7.06e-08!97;UBERON:0000161!7.64e-08!35;UBERON:0001737!8.40e-08!9;UBERON:0000072!9.88e-08!46;UBERON:0005157!6.21e-07!51|ontology_enrichment_uberon_v019=UBERON:0001737;2.39e-12;9!UBERON:0001557;2.39e-12;9!UBERON:0000065;5.73e-11;44!UBERON:0000072;6.48e-10;37!UBERON:0001004;1.69e-08;65|ontology_enrichment_uberon_v019_2=UBERON:0004119,5.30e-17,160;UBERON:0000925,5.30e-17,160;UBERON:0006595,5.30e-17,160;UBERON:0001007,1.05e-16,145;UBERON:0001555,1.05e-16,145;UBERON:0007026,1.05e-16,145;UBERON:0004921,5.67e-14,118;UBERON:0001004,2.37e-13,74;UBERON:0008947,5.62e-13,38;UBERON:0003258,5.62e-13,38;UBERON:0001737,2.36e-12,9;UBERON:0001041,3.85e-12,87;UBERON:0000065,2.72e-11,54;UBERON:0005911,2.16e-09,82;UBERON:0001048,2.87e-09,160;UBERON:0000072,3.67e-08,47;UBERON:0003929,1.12e-07,54;UBERON:0005153,5.42e-07,37|phase1_expression=0.726713517082227,2.14100523890983,0.281908808191942,2.00146596706261,0.893922188854576,1.74467704820074,0,0.631719873426831,0,0.491467873003018,0.697801167972428,1.31064823278103,1.58260186937072,1.11389717664042,2.31978163009541,0,0.602694528023977,0,0.487932798790507,0,0,0,0,0,0,0.152826811495903,0.0821005894499457,0.157421562627358,0,0,0,1.83884244895785,4.51808878167375,3.32778609150109,0.154934401160603,0,0,0,0,0,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,0.670700859703636,2.42938867502708,0,0.50133791063589,1.01392563272577,0,0,0.283604451492204,0.665188192387692,0.966182642624386,0.130979075497713,0.728590576585084,0.741568885568859,0,0,0.26591592103773,0,0,0,0.39752481473341,0,0,0,0,0.275118041940067,0,0.258416759169329,0.71153252537342,0,0,0,0,0,0,0.267899184852239,0.22452937262617,0.337834441449967,0,0,0.183201743930407,0,0,0.436094052142534,0,0,0.397227542439656,0.573673241497627,0,0,0,0,0.622422070799533,0.808264032418128,0.653847612453835,0.151357427644931,0,0.468642863667593,0,0,0.298897361103602,0.23486899728753,0,0.280901613404497,0.408308342509787,0.122834317311768,0.309977343527296,0,0.247266929278557,0.910161361938026,0,0,0.125118519871964,0,0,0,0,0.226864366320042,0,0.213557388818567,0.211931901159562,0.300091096084402,0.206105058476878,0.515281080091258,0,0,0.194874010322397,0,0.184099797284599,0.161646056818812,0.355009592516614,0.10075209822764,0.339121184620975,2.31913023795956,1.90922284413584,1.43402297694502,0.121973706129595,0,0.116193942869518,0.518305275076852,0.252320850875628,0,0,0,0,0.928735856063958,1.44375896333917,4.73227200159376,6.57480291304597,6.02527574708705,4.63234685476055,6.75426276686459,3.32178866755535,5.52808363456674,5.88664395376038,5.00171304030308,0,0,0.8231480226628,0,1.26755034821831,0.982827216677626,0,0,5.411491295897,3.43135620597051,2.85350742062426,1.1240175325762,2.6137532827024,1.66659201285353,0,0,1.44331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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6418 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10760 | |||
|TSSclassifier=W | |||
|UniProt=Q01105,Q5VXV3 | |||
|association_with_transcript=-135bp_to_ENST00000372692,NM_001122821,uc004bvt.3_5end | |||
|description=CAGE_peak_8_at_SET_5end | |||
|id=chr9:131445783..131445798,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.15e-40!254;CL:0000223!2.60e-16!59;CL:0002076!7.97e-15!43;CL:0000220!2.51e-10!246;CL:0002321!4.20e-10!248;CL:0002251!7.94e-09!21;CL:0000076!3.33e-08!62;CL:0000077!4.30e-08!19 | |||
|ontology_enrichment_celltype_v019=CL:0002076;7.58e-15;42!CL:0000077;8.05e-11;19!CL:0002251;2.08e-10;20!CL:0002368;1.74e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.41e-40,253;CL:0000223,6.41e-20,58;CL:0002076,1.93e-18,42;CL:0000076,6.79e-12,63;CL:0000077,6.19e-11,19;CL:0002251,1.28e-10,20;CL:0002368,1.68e-07,13 | |||
|ontology_enrichment_development_v019=CL:0000223;1.39e-09;58!UBERON:0008947;8.92e-09;29 | |||
|ontology_enrichment_disease=DOID:305!1.46e-20!106;DOID:0050687!1.37e-17!143;DOID:162!5.95e-09!235;DOID:14566!6.32e-09!239;DOID:1749!5.42e-08!14;DOID:299!7.14e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:1749;4.27e-12;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,4.83e-23,106;DOID:0050687,6.70e-18,143;DOID:1749,6.28e-12,14;DOID:162,4.93e-10,235;DOID:14566,2.06e-09,239 | |||
|ontology_enrichment_uberon=UBERON:0004119!4.05e-22!169;UBERON:0000925!4.05e-22!169;UBERON:0006595!4.05e-22!169;UBERON:0001007!3.45e-20!155;UBERON:0001555!3.45e-20!155;UBERON:0007026!3.45e-20!155;UBERON:0004921!2.54e-17!129;UBERON:0004185!2.54e-17!129;UBERON:0000077!3.18e-16!130;UBERON:0001041!3.34e-14!98;UBERON:0001004!2.82e-13!72;UBERON:0003104!1.49e-12!238;UBERON:0009142!1.49e-12!238;UBERON:0000466!5.51e-11!126;UBERON:0001048!8.38e-11!168;UBERON:0005911!9.82e-11!82;UBERON:0008947!2.85e-10!38;UBERON:0003258!2.85e-10!38;UBERON:0000065!3.49e-10!53;UBERON:0000481!5.20e-10!347;UBERON:0005177!1.98e-09!107;UBERON:0002100!2.08e-09!216;UBERON:0000464!7.21e-09!104;UBERON:0009569!1.04e-08!113;UBERON:0002530!2.77e-08!59;UBERON:0005153!2.83e-08!37;UBERON:0003929!5.17e-08!54;UBERON:0000063!7.06e-08!97;UBERON:0000161!7.64e-08!35;UBERON:0001737!8.40e-08!9;UBERON:0000072!9.88e-08!46;UBERON:0005157!6.21e-07!51 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;2.39e-12;9!UBERON:0001557;2.39e-12;9!UBERON:0000065;5.73e-11;44!UBERON:0000072;6.48e-10;37!UBERON:0001004;1.69e-08;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,5.30e-17,160;UBERON:0000925,5.30e-17,160;UBERON:0006595,5.30e-17,160;UBERON:0001007,1.05e-16,145;UBERON:0001555,1.05e-16,145;UBERON:0007026,1.05e-16,145;UBERON:0004921,5.67e-14,118;UBERON:0001004,2.37e-13,74;UBERON:0008947,5.62e-13,38;UBERON:0003258,5.62e-13,38;UBERON:0001737,2.36e-12,9;UBERON:0001041,3.85e-12,87;UBERON:0000065,2.72e-11,54;UBERON:0005911,2.16e-09,82;UBERON:0001048,2.87e-09,160;UBERON:0000072,3.67e-08,47;UBERON:0003929,1.12e-07,54;UBERON:0005153,5.42e-07,37 | |||
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| |||
|short_description=p8@SET | |||
}} |
Revision as of 07:42, 14 September 2013
Short description: | p8@SET |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_SET_5end |
Coexpression cluster: | NA |
Association with transcript: | -135bp_to_ENST00000372692, NM_001122821, uc004bvt.3_5end |
EntrezGene: | SET |
HGNC: | 10760 |
UniProt: | Q01105Q5VXV3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.41e-40 | 253 |
endodermal cell | 6.41e-20 | 58 |
endo-epithelial cell | 1.93e-18 | 42 |
squamous epithelial cell | 6.79e-12 | 63 |
mesothelial cell | 6.19e-11 | 19 |
epithelial cell of alimentary canal | 1.28e-10 | 20 |
respiratory epithelial cell | 1.68e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 5.30e-17 | 160 |
endoderm | 5.30e-17 | 160 |
presumptive endoderm | 5.30e-17 | 160 |
digestive system | 1.05e-16 | 145 |
digestive tract | 1.05e-16 | 145 |
primitive gut | 1.05e-16 | 145 |
subdivision of digestive tract | 5.67e-14 | 118 |
respiratory system | 2.37e-13 | 74 |
respiratory primordium | 5.62e-13 | 38 |
endoderm of foregut | 5.62e-13 | 38 |
larynx | 2.36e-12 | 9 |
foregut | 3.85e-12 | 87 |
respiratory tract | 2.72e-11 | 54 |
endo-epithelium | 2.16e-09 | 82 |
primordium | 2.87e-09 | 160 |
segment of respiratory tract | 3.67e-08 | 47 |
gut epithelium | 1.12e-07 | 54 |
epithelial bud | 5.42e-07 | 37 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 4.83e-23 | 106 |
cell type cancer | 6.70e-18 | 143 |
squamous cell carcinoma | 6.28e-12 | 14 |
cancer | 4.93e-10 | 235 |
disease of cellular proliferation | 2.06e-09 | 239 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.