FFCP PHASE1:Hg19::chr9:130586651..130586690,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C962|description=CAGE_peak_at_chr9:130586651..130586690,+|id=chr9:130586651..130586690,+|ontology_enrichment_celltype=CL:0000115!7.81e-14!35;CL:0002078!7.66e-13!44;CL:0000055!1.22e-12!180;CL:0000222!2.31e-12!119;CL:0002139!4.41e-12!24;CL:0000057!2.30e-11!75;CL:0000071!3.33e-09!18;CL:0002546!3.33e-09!18;CL:0002334!3.64e-09!12;CL:0000213!8.49e-09!57;CL:0000215!8.49e-09!57|ontology_enrichment_celltype_v019=CL:0002334;3.92e-16;12!CL:0000115;7.36e-16;36!CL:0002139;5.55e-14;24!CL:0000071;5.52e-11;18!CL:0002078;3.34e-10;45!CL:0002188;1.10e-07;5!CL:0000213;1.78e-07;58!CL:0000215;1.78e-07;58|ontology_enrichment_celltype_v019_2=CL:0000115,1.72e-17,36;CL:0002334,2.52e-16,12;CL:0002078,1.80e-15,45;CL:0002139,6.04e-14,24;CL:0000057,1.43e-12,76;CL:0000213,2.72e-12,58;CL:0000215,2.72e-12,58;CL:0000071,5.73e-11,18;CL:0002546,5.73e-11,18;CL:0000222,9.65e-09,121;CL:0002188,6.08e-08,5|ontology_enrichment_development_v019=CL:0002546;5.52e-11;18|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004872!1.08e-17!84;UBERON:0000055!5.58e-15!69;UBERON:0002049!9.37e-15!79;UBERON:0007798!9.37e-15!79;UBERON:0001009!3.76e-14!113;UBERON:0004535!1.16e-13!110;UBERON:0001981!5.47e-13!60;UBERON:0007500!5.47e-13!60;UBERON:0004537!5.47e-13!60;UBERON:0006965!5.47e-13!60;UBERON:0003914!2.58e-12!118;UBERON:0003081!9.09e-11!216;UBERON:0001986!3.33e-09!18;UBERON:0004638!3.33e-09!18;UBERON:0004852!3.33e-09!18;UBERON:0000926!8.18e-09!448;UBERON:0004120!8.18e-09!448;UBERON:0006603!8.18e-09!448;UBERON:0006914!1.22e-08!25;UBERON:0000487!4.47e-08!22;UBERON:0000468!1.70e-07!659;UBERON:0001637!6.20e-07!42;UBERON:0003509!6.20e-07!42;UBERON:0004572!6.20e-07!42;UBERON:0007100!6.49e-07!27|ontology_enrichment_uberon_v019=UBERON:0006914;1.25e-11;25!UBERON:0004638;5.52e-11;18!UBERON:0001986;5.52e-11;18!UBERON:0004852;5.52e-11;18!UBERON:0000487;5.15e-10;22!UBERON:0004457;3.09e-08;9!UBERON:0000042;3.09e-08;9!UBERON:0003513;7.01e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0004872,5.92e-15,83;UBERON:0000055,2.80e-12,68;UBERON:0006914,1.26e-11,25;UBERON:0001009,2.99e-11,112;UBERON:0004638,5.73e-11,18;UBERON:0001986,5.73e-11,18;UBERON:0004852,5.73e-11,18;UBERON:0004535,2.75e-10,109;UBERON:0002049,2.93e-10,78;UBERON:0007798,2.93e-10,78;UBERON:0000487,5.33e-10,22;UBERON:0007500,9.93e-10,59;UBERON:0001981,9.93e-10,59;UBERON:0004537,9.93e-10,59;UBERON:0006965,9.93e-10,59;UBERON:0003914,1.60e-09,117;UBERON:0003081,7.84e-09,203;UBERON:0000926,2.23e-08,315;UBERON:0004120,2.23e-08,315;UBERON:0006603,2.23e-08,315;UBERON:0004457,2.21e-07,12;UBERON:0000042,2.21e-07,12|phase1_expression=2.90685406832891,2.14100523890983,4.22863212287913,0,2.68176656656373,4.36169262050184,0,0.631719873426831,0.783556884599516,0.245733936501509,1.39560233594486,0.218441372130172,0.263766978228454,0.247532705920093,0.662794751455832,0,1.80808358407193,0,0,0.123121058076788,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0.434021741431704,0.223915474239924,0,0,1.16318591023652,1.88937971844405,0.970336244751265,0.929716147622738,0.411167888021826,0,1.1507695692886,0,0.236482229888585,0.344745680736619,0,0,1.31769637679823,0.272906150057846,0.449446968890169,0.612167784741805,0,0.639337125799041,0.329851300186716,0.598390972864896,0.852449501065388,0.870627715885752,0,1.24564449799115,0,0,0.217188844705117,0,0,0,0.211255286311942,0,0,0,0.300353785683013,0.16072558669708,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0.164437904603676,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,1.34140171940727,3.45228916977532,3.97583067623023,1.00267582127178,1.88300474649071,0,0.486634870302636,0,0,0,1.0478326039817,0,0,0,0.348259474598534,0.26591592103773,0,0,0,0.79504962946682,0.860234595106124,5.55424802572151,0,13.0044825225071,13.4807840550633,1.04497483268405,0.775250277507987,0.35576626268671,3.01248551488203,6.0424397566372,0.760272105718513,1.46437234528902,3.67663080345869,21.8738325928075,1.3394959242612,0.673588117878509,1.0135033243499,3.06633274931766,1.89853131913626,1.83201743930407,0,0,0,3.47880366186723,1.13967460498122,0.662045904066094,2.29469296599051,0.354668382198357,0.560677600142307,1.06748995729705,1.48000529050296,0.622422070799533,0.538842688278752,2.7788523529288,0.454072282934794,1.15235184896,0.468642863667593,2.18512053781224,0,1.79338416662161,0.117434498643765,0.161872944368132,0.280901613404497,0,0.368502951935304,0.103325781175765,0,0.494533858557114,0,2.15585442544872,0,0,0,0,1.83892677479412,0.600952235626387,1.24775401476023,1.07633781413317,0,0,1.50045548042201,0.103052529238439,1.54584324027377,0.744467425326359,1.5189869901714,0.194874010322397,1.00973509697646,0.0920498986422993,0.1616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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C962 | |||
|description=CAGE_peak_at_chr9:130586651..130586690,+ | |||
|id=chr9:130586651..130586690,+ | |||
|ontology_enrichment_celltype=CL:0000115!7.81e-14!35;CL:0002078!7.66e-13!44;CL:0000055!1.22e-12!180;CL:0000222!2.31e-12!119;CL:0002139!4.41e-12!24;CL:0000057!2.30e-11!75;CL:0000071!3.33e-09!18;CL:0002546!3.33e-09!18;CL:0002334!3.64e-09!12;CL:0000213!8.49e-09!57;CL:0000215!8.49e-09!57 | |||
|ontology_enrichment_celltype_v019=CL:0002334;3.92e-16;12!CL:0000115;7.36e-16;36!CL:0002139;5.55e-14;24!CL:0000071;5.52e-11;18!CL:0002078;3.34e-10;45!CL:0002188;1.10e-07;5!CL:0000213;1.78e-07;58!CL:0000215;1.78e-07;58 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.72e-17,36;CL:0002334,2.52e-16,12;CL:0002078,1.80e-15,45;CL:0002139,6.04e-14,24;CL:0000057,1.43e-12,76;CL:0000213,2.72e-12,58;CL:0000215,2.72e-12,58;CL:0000071,5.73e-11,18;CL:0002546,5.73e-11,18;CL:0000222,9.65e-09,121;CL:0002188,6.08e-08,5 | |||
|ontology_enrichment_development_v019=CL:0002546;5.52e-11;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004872!1.08e-17!84;UBERON:0000055!5.58e-15!69;UBERON:0002049!9.37e-15!79;UBERON:0007798!9.37e-15!79;UBERON:0001009!3.76e-14!113;UBERON:0004535!1.16e-13!110;UBERON:0001981!5.47e-13!60;UBERON:0007500!5.47e-13!60;UBERON:0004537!5.47e-13!60;UBERON:0006965!5.47e-13!60;UBERON:0003914!2.58e-12!118;UBERON:0003081!9.09e-11!216;UBERON:0001986!3.33e-09!18;UBERON:0004638!3.33e-09!18;UBERON:0004852!3.33e-09!18;UBERON:0000926!8.18e-09!448;UBERON:0004120!8.18e-09!448;UBERON:0006603!8.18e-09!448;UBERON:0006914!1.22e-08!25;UBERON:0000487!4.47e-08!22;UBERON:0000468!1.70e-07!659;UBERON:0001637!6.20e-07!42;UBERON:0003509!6.20e-07!42;UBERON:0004572!6.20e-07!42;UBERON:0007100!6.49e-07!27 | |||
|ontology_enrichment_uberon_v019=UBERON:0006914;1.25e-11;25!UBERON:0004638;5.52e-11;18!UBERON:0001986;5.52e-11;18!UBERON:0004852;5.52e-11;18!UBERON:0000487;5.15e-10;22!UBERON:0004457;3.09e-08;9!UBERON:0000042;3.09e-08;9!UBERON:0003513;7.01e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004872,5.92e-15,83;UBERON:0000055,2.80e-12,68;UBERON:0006914,1.26e-11,25;UBERON:0001009,2.99e-11,112;UBERON:0004638,5.73e-11,18;UBERON:0001986,5.73e-11,18;UBERON:0004852,5.73e-11,18;UBERON:0004535,2.75e-10,109;UBERON:0002049,2.93e-10,78;UBERON:0007798,2.93e-10,78;UBERON:0000487,5.33e-10,22;UBERON:0007500,9.93e-10,59;UBERON:0001981,9.93e-10,59;UBERON:0004537,9.93e-10,59;UBERON:0006965,9.93e-10,59;UBERON:0003914,1.60e-09,117;UBERON:0003081,7.84e-09,203;UBERON:0000926,2.23e-08,315;UBERON:0004120,2.23e-08,315;UBERON:0006603,2.23e-08,315;UBERON:0004457,2.21e-07,12;UBERON:0000042,2.21e-07,12 | |||
|phase1_expression=2.90685406832891,2.14100523890983,4.22863212287913,0,2.68176656656373,4.36169262050184,0,0.631719873426831,0.783556884599516,0.245733936501509,1.39560233594486,0.218441372130172,0.263766978228454,0.247532705920093,0.662794751455832,0,1.80808358407193,0,0,0.123121058076788,0.204000691244253,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0.434021741431704,0.223915474239924,0,0,1.16318591023652,1.88937971844405,0.970336244751265,0.929716147622738,0.411167888021826,0,1.1507695692886,0,0.236482229888585,0.344745680736619,0,0,1.31769637679823,0.272906150057846,0.449446968890169,0.612167784741805,0,0.639337125799041,0.329851300186716,0.598390972864896,0.852449501065388,0.870627715885752,0,1.24564449799115,0,0,0.217188844705117,0,0,0,0.211255286311942,0,0,0,0.300353785683013,0.16072558669708,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.128091319725675,0,0.164437904603676,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,0,1.34140171940727,3.45228916977532,3.97583067623023,1.00267582127178,1.88300474649071,0,0.486634870302636,0,0,0,1.0478326039817,0,0,0,0.348259474598534,0.26591592103773,0,0,0,0.79504962946682,0.860234595106124,5.55424802572151,0,13.0044825225071,13.4807840550633,1.04497483268405,0.775250277507987,0.35576626268671,3.01248551488203,6.0424397566372,0.760272105718513,1.46437234528902,3.67663080345869,21.8738325928075,1.3394959242612,0.673588117878509,1.0135033243499,3.06633274931766,1.89853131913626,1.83201743930407,0,0,0,3.47880366186723,1.13967460498122,0.662045904066094,2.29469296599051,0.354668382198357,0.560677600142307,1.06748995729705,1.48000529050296,0.622422070799533,0.538842688278752,2.7788523529288,0.454072282934794,1.15235184896,0.468642863667593,2.18512053781224,0,1.79338416662161,0.117434498643765,0.161872944368132,0.280901613404497,0,0.368502951935304,0.103325781175765,0,0.494533858557114,0,2.15585442544872,0,0,0,0,1.83892677479412,0.600952235626387,1.24775401476023,1.07633781413317,0,0,1.50045548042201,0.103052529238439,1.54584324027377,0.744467425326359,1.5189869901714,0.194874010322397,1.00973509697646,0.0920498986422993,0.161646056818812,2.84007674013291,0.201504196455281,1.01736355386293,0,0,0,0,0,0.116193942869518,0,0.252320850875628,0,0,2.57296375277154,0,0,3.60939740834793,0.473227200159376,0.337169380156203,0.241011029883482,0.772057809126758,0.217879444092406,0.237270619111097,0.269662616320329,0.392442930250692,0,2.21446636387394,1.40241773803446,0.8231480226628,2.94017422771084,0,0,0.590789906681404,0,0,0.857839051492628,0,0,0,0.0925884451585296,0.651616610620649,1.03993478527958,0,0,0,2.45422961193825,4.62985512576611,4.75635380586496,0,0,0,0.468008530278475,1.18904929830983,0,0,0,0,0,0,0,0,0,0,0,0.190493682876507,0,0,1.71072446022705,0.822619941626588,0.300343057843917,0.285826432630578,0.336393253036082,0,1.39342743059805,0.129271715757778,3.57656445851882,0,0.797814349754612,5.2003718455683,2.05765899409714,1.41849132023278,1.3321108950805,0.285955987316295,2.71310802695722,0,1.30294473717494,0.355391948742546,0,0.602878754119172,0,1.19967589418468,0,1.50677127429638,0,1.4377491329495,0,0,0.289562613335158,0.61642896765115,1.43248770591916,0,0,0,0,0,0,0,0,0,0,0,0,0.736148950314839,4.00136416847742,1.08506009479894,1.24782516918484,3.03329280955175,0.788512075169673,0.585707074963566,0,0,1.03473071292505,2.65690239414175,0.553107505625109,0.521301686808497,1.37060810223918,2.74514739048685,0,0,0.320182673410333,0,1.66435439510497,0,4.96215615637554,3.83654933220156,3.64858122762996,4.22859192543813,3.07024349440022,2.57366273829772,1.48418066444991,2.31314540703983,2.30830242907065,2.21743321237285,1.55776328755086,3.83494248917865,0,0.200506470303285,0,0.34444334449382,0.910455840033585,0.524497659837696,0,0,0,0,0,9.09867072567173,4.59253004246592,1.94324324491925,12.3381802152231,0.812839312631559,0,0.509752546090077,0.831076008928724,0.671624264166535,0,0,0,0.328014645699706,0,0.824328093181778,0.0915694648183434,0.082509499920588,0,0,6.42735719376638,2.32009723901093,0.616194468458578,0.307007349452259,0,0.214840489736547,0.145016693914229,0.596586391912706,1.33548053470106,0,0,0,0,0,0.94443704049192,0,2.15623506123262,0,0.869932992075073,0.55597265731176,0.143124886741991,0,0.316379424718726,0.38126038784765,1.02359116524534,0.42793898803392,0.95460974377781,0,0,0.274537029736055,0.235624804691373,0.404364963146632,1.58510321173008,0.421258456238981,0.975267478179181,4.87426979262569,1.05650146756755,1.22849920267187,0.707027159768564,0,0.551365343546124,6.6343897524122,1.31535265576129,0.578775534266688,0,0,0.30982349809975,0.563391205064483,0.717056761020258,0.392996164052485,0.35667105148125,0.354761064070598,7.38876723541824,4.93942339439853,0.379473173765715,0.699869440489966,0,0,0,1.31801321087491,0,0,0.886860307073351,0.229723400206959,0,0,0,0.238231775457789,0,0,0.540031437238115,0,0.106824071127473,0,0,0,0,0,0,0.199579371432817,0.191505370132367,1.2700414963433,0.649243880549111,0.2807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| |||
|short_description=p@chr9:130586651..130586690,+ | |||
}} |
Revision as of 07:34, 14 September 2013
Short description: | p@chr9:130586651..130586690, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr9:130586651..130586690, + |
Coexpression cluster: | C962_Renal_Endothelial_Preadipocyte_Adipocyte_Hepatic_chorionic_tenocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.72e-17 | 36 |
preadipocyte | 2.52e-16 | 12 |
meso-epithelial cell | 1.80e-15 | 45 |
endothelial cell of vascular tree | 6.04e-14 | 24 |
fibroblast | 1.43e-12 | 76 |
lining cell | 2.72e-12 | 58 |
barrier cell | 2.72e-12 | 58 |
blood vessel endothelial cell | 5.73e-11 | 18 |
embryonic blood vessel endothelial progenitor cell | 5.73e-11 | 18 |
mesodermal cell | 9.65e-09 | 121 |
glomerular endothelial cell | 6.08e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
splanchnic layer of lateral plate mesoderm | 5.92e-15 | 83 |
vessel | 2.80e-12 | 68 |
squamous epithelium | 1.26e-11 | 25 |
circulatory system | 2.99e-11 | 112 |
blood vessel endothelium | 5.73e-11 | 18 |
endothelium | 5.73e-11 | 18 |
cardiovascular system endothelium | 5.73e-11 | 18 |
cardiovascular system | 2.75e-10 | 109 |
vasculature | 2.93e-10 | 78 |
vascular system | 2.93e-10 | 78 |
simple squamous epithelium | 5.33e-10 | 22 |
epithelial tube open at both ends | 9.93e-10 | 59 |
blood vessel | 9.93e-10 | 59 |
blood vasculature | 9.93e-10 | 59 |
vascular cord | 9.93e-10 | 59 |
epithelial tube | 1.60e-09 | 117 |
lateral plate mesoderm | 7.84e-09 | 203 |
mesoderm | 2.23e-08 | 315 |
mesoderm-derived structure | 2.23e-08 | 315 |
presumptive mesoderm | 2.23e-08 | 315 |
cavity lining | 2.21e-07 | 12 |
serous membrane | 2.21e-07 | 12 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.