FFCP PHASE1:Mm9::chr5:125342647..125342663,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=215707|HGNC=|MCL_coexpression_id=20|UniProt=Q8VDN4|association_with_transcript=-56bp_to_NM_144819,uc008zqr.1_5end|description=CAGE_peak_5_at_Ccdc92_5end|id=chr5:125342647..125342663,-|ontology_enrichment_celltype=CL:0000117!1.42e-11!23;CL:0000337!1.42e-11!23;CL:0000540!3.57e-08!33;CL:0000047!3.57e-08!33;CL:0000031!3.57e-08!33;CL:0000404!3.57e-08!33;CL:0002319!6.13e-08!43;CL:0000221!1.82e-07!44;CL:0000133!1.82e-07!44|ontology_enrichment_celltype_v019_2=CL:0000117,9.86e-19,23;CL:0000337,9.86e-19,23;CL:0000540,1.20e-11,33;CL:0000047,1.20e-11,33;CL:0000031,1.20e-11,33;CL:0000404,1.20e-11,33;CL:0002319,3.25e-10,43;CL:0000221,7.18e-10,44;CL:0000133,7.18e-10,44;CL:0000393,3.56e-09,39;CL:0000211,3.56e-09,39;CL:0002610,9.65e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.62e-23!75;UBERON:0001016!1.62e-23!75;UBERON:0001017!4.89e-23!73;UBERON:0005743!4.89e-23!73;UBERON:0002346!1.04e-22!71;UBERON:0003075!1.04e-22!71;UBERON:0007284!1.04e-22!71;UBERON:0004121!1.26e-22!102;UBERON:0000924!1.26e-22!102;UBERON:0006601!1.26e-22!102;UBERON:0001049!1.08e-21!52;UBERON:0005068!1.08e-21!52;UBERON:0006241!1.08e-21!52;UBERON:0007135!1.08e-21!52;UBERON:0000955!2.57e-20!50;UBERON:0006238!2.57e-20!50;UBERON:0002616!1.29e-19!49;UBERON:0000033!2.13e-19!63;UBERON:0003056!9.16e-17!49;UBERON:0002020!5.90e-16!34;UBERON:0003080!2.63e-15!40;UBERON:0002780!1.36e-14!39;UBERON:0001890!1.36e-14!39;UBERON:0006240!1.36e-14!39;UBERON:0002791!1.42e-12!29;UBERON:0003528!1.42e-12!29;UBERON:0001893!1.42e-12!29;UBERON:0007811!9.32e-10!86;UBERON:0000153!2.43e-08!94;UBERON:0000956!8.00e-08!21;UBERON:0001869!8.00e-08!21;UBERON:0000203!8.00e-08!21;UBERON:0002021!3.27e-07!10;UBERON:0000411!3.27e-07!10;UBERON:0001950!3.27e-07!10;UBERON:0003076!3.67e-07!12;UBERON:0003057!3.67e-07!12;UBERON:0002619!5.95e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.88e-39,54;UBERON:0001016,8.77e-39,75;UBERON:0001017,3.58e-38,73;UBERON:0001049,3.78e-36,52;UBERON:0005068,3.78e-36,52;UBERON:0006241,3.78e-36,52;UBERON:0007135,3.78e-36,52;UBERON:0004121,9.41e-30,95;UBERON:0000924,9.41e-30,95;UBERON:0006601,9.41e-30,95;UBERON:0002346,2.91e-29,64;UBERON:0003075,2.91e-29,64;UBERON:0007284,2.91e-29,64;UBERON:0000955,2.29e-28,47;UBERON:0006238,2.29e-28,47;UBERON:0002616,6.27e-27,46;UBERON:0002020,5.57e-26,34;UBERON:0010371,1.97e-24,73;UBERON:0003080,2.31e-22,40;UBERON:0002780,6.72e-21,39;UBERON:0001890,6.72e-21,39;UBERON:0006240,6.72e-21,39;UBERON:0003528,1.06e-18,29;UBERON:0002791,1.06e-18,29;UBERON:0001893,1.06e-18,29;UBERON:0003056,1.90e-18,49;UBERON:0010314,2.32e-17,92;UBERON:0002021,6.72e-15,10;UBERON:0000411,6.72e-15,10;UBERON:0001950,6.72e-15,10;UBERON:0003076,1.13e-14,12;UBERON:0003057,1.13e-14,12;UBERON:0002420,6.55e-13,8;UBERON:0007245,6.55e-13,8;UBERON:0010009,6.55e-13,8;UBERON:0010011,6.55e-13,8;UBERON:0000454,6.55e-13,8;UBERON:0000025,2.75e-11,114;UBERON:0002240,3.37e-11,6;UBERON:0005174,3.37e-11,6;UBERON:0001137,3.37e-11,6;UBERON:0004111,6.03e-10,122;UBERON:0002619,1.11e-09,17;UBERON:0001948,2.34e-09,5;UBERON:0002315,2.34e-09,5;UBERON:0000956,5.50e-09,21;UBERON:0001869,5.50e-09,21;UBERON:0000203,5.50e-09,21;UBERON:0000369,3.42e-08,5;UBERON:0002435,3.42e-08,5;UBERON:0000204,3.42e-08,5;UBERON:0010082,3.42e-08,5;UBERON:0011216,4.08e-08,194;UBERON:0002950,5.09e-08,4;UBERON:0001891,5.09e-08,4;UBERON:0009616,5.09e-08,4;UBERON:0010286,5.09e-08,4;UBERON:0004684,9.65e-07,3;UBERON:0002275,9.65e-07,3|phase1_expression=0.160148847104794,0,0,0,0,0,0.467225281191051,0.258246646883153,0.140788722151667,0,0,0,0,0.34968160967599,0,0,0,0,0.137114433605739,0,1.02051948181284,0,0,0.95995453676044,0,0,0.430761996159075,0,0,0,0,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0.251793635951155,0,0,0,0.218025156380447,0,0.777719596297134,0.139986421625363,2.87505128729943,0.503347818173209,0,0,0,0,0.515672092277442,1.82084814773638,2.11596391708813,2.53532561402472,0.338844532069132,0,0,0,0,0,0.384218305321555,0.103689612308478,0.675029691658453,0.420649922702764,5.71301968807607,4.8591079009355,0.367472397644862,0.575072826109418,0,7.70811166995721,5.2351808614927,8.29475279583715,2.2420668914133,2.10421580285542,1.04182674111352,7.53794097303729,3.37657566019008,4.73674568108111,4.71405736757868,5.83723891276322,2.23679334990361,0.151452386666368,1.66257432234928,0,0,0,0,0,0,1.12355536105401,0,0,0,0,0,0,0,0.216491041011214,0,0,0.11418387971906,0,0.593768556259299,0.520455980298408,0.608930956624282,0.461230994512117,0.150722640552623,0,0,0.247194967734374,0.289198713839823,0.884610551949874,0,0,0,0,5.85561594023094,5.44561437714983,0.255457055208591,0,0,0,6.74057877321702,8.6925114535539,1.38219787324151,3.82413504423008,1.79000820131231,7.68815764870372,3.56930778749067,0.101839363850316,0.124406970610093,0.505445516867349,0.210441855886474,0.390361328888111,0.229902104433473,0.540186389416048,0.452114453507145,0.340182495756639,0.512454881139399,0.0937017245597288,1.29351685369508,0,0,0.175951124163949,0.219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| ||
|EntrezGene=215707 | |||
|HGNC= | |||
|MCL_coexpression_id=20 | |||
|UniProt=Q8VDN4 | |||
|association_with_transcript=-56bp_to_NM_144819,uc008zqr.1_5end | |||
|description=CAGE_peak_5_at_Ccdc92_5end | |||
|id=chr5:125342647..125342663,- | |||
|ontology_enrichment_celltype=CL:0000117!1.42e-11!23;CL:0000337!1.42e-11!23;CL:0000540!3.57e-08!33;CL:0000047!3.57e-08!33;CL:0000031!3.57e-08!33;CL:0000404!3.57e-08!33;CL:0002319!6.13e-08!43;CL:0000221!1.82e-07!44;CL:0000133!1.82e-07!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,9.86e-19,23;CL:0000337,9.86e-19,23;CL:0000540,1.20e-11,33;CL:0000047,1.20e-11,33;CL:0000031,1.20e-11,33;CL:0000404,1.20e-11,33;CL:0002319,3.25e-10,43;CL:0000221,7.18e-10,44;CL:0000133,7.18e-10,44;CL:0000393,3.56e-09,39;CL:0000211,3.56e-09,39;CL:0002610,9.65e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.62e-23!75;UBERON:0001016!1.62e-23!75;UBERON:0001017!4.89e-23!73;UBERON:0005743!4.89e-23!73;UBERON:0002346!1.04e-22!71;UBERON:0003075!1.04e-22!71;UBERON:0007284!1.04e-22!71;UBERON:0004121!1.26e-22!102;UBERON:0000924!1.26e-22!102;UBERON:0006601!1.26e-22!102;UBERON:0001049!1.08e-21!52;UBERON:0005068!1.08e-21!52;UBERON:0006241!1.08e-21!52;UBERON:0007135!1.08e-21!52;UBERON:0000955!2.57e-20!50;UBERON:0006238!2.57e-20!50;UBERON:0002616!1.29e-19!49;UBERON:0000033!2.13e-19!63;UBERON:0003056!9.16e-17!49;UBERON:0002020!5.90e-16!34;UBERON:0003080!2.63e-15!40;UBERON:0002780!1.36e-14!39;UBERON:0001890!1.36e-14!39;UBERON:0006240!1.36e-14!39;UBERON:0002791!1.42e-12!29;UBERON:0003528!1.42e-12!29;UBERON:0001893!1.42e-12!29;UBERON:0007811!9.32e-10!86;UBERON:0000153!2.43e-08!94;UBERON:0000956!8.00e-08!21;UBERON:0001869!8.00e-08!21;UBERON:0000203!8.00e-08!21;UBERON:0002021!3.27e-07!10;UBERON:0000411!3.27e-07!10;UBERON:0001950!3.27e-07!10;UBERON:0003076!3.67e-07!12;UBERON:0003057!3.67e-07!12;UBERON:0002619!5.95e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.88e-39,54;UBERON:0001016,8.77e-39,75;UBERON:0001017,3.58e-38,73;UBERON:0001049,3.78e-36,52;UBERON:0005068,3.78e-36,52;UBERON:0006241,3.78e-36,52;UBERON:0007135,3.78e-36,52;UBERON:0004121,9.41e-30,95;UBERON:0000924,9.41e-30,95;UBERON:0006601,9.41e-30,95;UBERON:0002346,2.91e-29,64;UBERON:0003075,2.91e-29,64;UBERON:0007284,2.91e-29,64;UBERON:0000955,2.29e-28,47;UBERON:0006238,2.29e-28,47;UBERON:0002616,6.27e-27,46;UBERON:0002020,5.57e-26,34;UBERON:0010371,1.97e-24,73;UBERON:0003080,2.31e-22,40;UBERON:0002780,6.72e-21,39;UBERON:0001890,6.72e-21,39;UBERON:0006240,6.72e-21,39;UBERON:0003528,1.06e-18,29;UBERON:0002791,1.06e-18,29;UBERON:0001893,1.06e-18,29;UBERON:0003056,1.90e-18,49;UBERON:0010314,2.32e-17,92;UBERON:0002021,6.72e-15,10;UBERON:0000411,6.72e-15,10;UBERON:0001950,6.72e-15,10;UBERON:0003076,1.13e-14,12;UBERON:0003057,1.13e-14,12;UBERON:0002420,6.55e-13,8;UBERON:0007245,6.55e-13,8;UBERON:0010009,6.55e-13,8;UBERON:0010011,6.55e-13,8;UBERON:0000454,6.55e-13,8;UBERON:0000025,2.75e-11,114;UBERON:0002240,3.37e-11,6;UBERON:0005174,3.37e-11,6;UBERON:0001137,3.37e-11,6;UBERON:0004111,6.03e-10,122;UBERON:0002619,1.11e-09,17;UBERON:0001948,2.34e-09,5;UBERON:0002315,2.34e-09,5;UBERON:0000956,5.50e-09,21;UBERON:0001869,5.50e-09,21;UBERON:0000203,5.50e-09,21;UBERON:0000369,3.42e-08,5;UBERON:0002435,3.42e-08,5;UBERON:0000204,3.42e-08,5;UBERON:0010082,3.42e-08,5;UBERON:0011216,4.08e-08,194;UBERON:0002950,5.09e-08,4;UBERON:0001891,5.09e-08,4;UBERON:0009616,5.09e-08,4;UBERON:0010286,5.09e-08,4;UBERON:0004684,9.65e-07,3;UBERON:0002275,9.65e-07,3 | |||
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|short_description=p5@Ccdc92 | |||
}} |
Revision as of 06:28, 14 September 2013
Short description: | p5@Ccdc92 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_Ccdc92_5end |
Coexpression cluster: | MCL_coexpression_mm9:20 |
Association with transcript: | -56bp_to_NM_144819, uc008zqr.1_5end |
EntrezGene: | Ccdc92 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 9.86e-19 | 23 |
neuroblast (sensu Vertebrata) | 9.86e-19 | 23 |
neuron | 1.20e-11 | 33 |
neuronal stem cell | 1.20e-11 | 33 |
neuroblast | 1.20e-11 | 33 |
electrically signaling cell | 1.20e-11 | 33 |
neural cell | 3.25e-10 | 43 |
ectodermal cell | 7.18e-10 | 44 |
neurectodermal cell | 7.18e-10 | 44 |
electrically responsive cell | 3.56e-09 | 39 |
electrically active cell | 3.56e-09 | 39 |
raphe nuclei neuron | 9.65e-07 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.