FFCP PHASE1:Mm9::chr4:120288421..120288437,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=|HGNC=|MCL_coexpression_id=1438|UniProt=|association_with_transcript=-5bp_to_uc008unk.1_5end|description=CAGE_peak_1_at_uc008unk.1_5end|id=chr4:120288421..120288437,+|ontology_enrichment_celltype=CL:0002563!1.25e-09!9;CL:0002251!1.25e-09!9|ontology_enrichment_celltype_v019_2=CL:0002563,1.25e-28,9;CL:0002251,1.25e-28,9;CL:0000066,3.71e-20,25;CL:0002076,6.09e-17,15;CL:0002250,9.38e-17,3;CL:0000682,1.20e-16,3;CL:0000239,1.28e-14,6;CL:0000677,1.28e-14,6;CL:0000584,1.28e-14,6;CL:0000075,1.46e-12,7;CL:0000223,1.53e-12,20;CL:0000473,1.98e-07,7|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!2.32e-16!15;UBERON:0001242!6.37e-14!13;UBERON:0000060!6.37e-14!13;UBERON:0001262!6.37e-14!13;UBERON:0004786!6.37e-14!13;UBERON:0000160!1.02e-13!43;UBERON:0005409!3.29e-13!59;UBERON:0003350!1.25e-09!9;UBERON:0004808!1.25e-09!9;UBERON:0001277!1.25e-09!9;UBERON:0004923!1.82e-08!24;UBERON:0000485!1.82e-07!11|ontology_enrichment_uberon_v019_2=UBERON:0000344,3.35e-41,15;UBERON:0001242,5.51e-32,13;UBERON:0001262,5.51e-32,13;UBERON:0004786,5.51e-32,13;UBERON:0003350,1.25e-28,9;UBERON:0004808,1.25e-28,9;UBERON:0001277,1.25e-28,9;UBERON:0004923,3.09e-25,24;UBERON:0000485,2.53e-23,11;UBERON:0000160,5.66e-19,31;UBERON:0005409,5.28e-12,47;UBERON:0001962,1.88e-11,2;UBERON:0001961,1.88e-11,2;UBERON:0001744,1.88e-11,2;UBERON:0002465,6.36e-08,3;UBERON:0000331,9.44e-08,3;UBERON:0002116,9.44e-08,3;UBERON:0001204,9.44e-08,3;UBERON:0001168,9.44e-08,3|phase1_expression=0,2.79180326111489,5.91499011206397,0.30246421130683,0,11.2479112180966,12.6150825921584,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,6.23970448894286,4.12936705920906,4.01962374880514,6.46142994238612,8.61884930743556,0.570070258369122,1.26015064879965,5.98672378769323,0,0,0,7.51014211353314,4.3221007793208,7.75843553797003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103689612308478,0,0,0,0,0.122490799214954,0.0958454710182364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0,1.02182822083437,0,0,0,0,0,0.125654352112864,0.173824320192276,0,0,0,0,0.124406970610093,0.252722758433675,0,0,0,0,0.150704817835715,0,0,0.0937017245597288,0,0,0,0,0,0,0,0,0,0,0,0,0.207125772535502,0.234526059981096,0,0,0,0.462801338662135,0,0,0,0,0,0,0.146199987425332,0.219550115291051,0,0,0,0.330418782983798,0.793351699990633,0,0,0.515469845288373,0.403367049246685,0,0,0.949058123089023,0.164698954724011,0.754005626400808,0.198956472041151,0.19496408711912,0,0.864552199498777,1.59313018603494,0,0,0,0,0.193952487167626,0,0,0,0,0,0,0,0,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10374698521893,0,0,0,0,0,0,0.215423397732799,0,0,0,0,0,0,0,0.283880170416537,0.178065603667255,0,0.494910368917606,0,0,0,0.188605079755898,0,0,0.258428293168221,0,0,0,0,0,0.340439605753788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291480836629851,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0.418176592028937,0.436725127492355,0.134864346384821,0.165306911450672,0,0.777689839750757,0.621339313086926,0,0,0,0,0,0,0,0,0,0.241584120826006,0,0,0,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0.187682475451182,0.183151624267265,0,0,0,0,0,0.171853182343688,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0,0.44449345560323,0.206035057238894,0,0,0.25347929989024,0.188626341386076,0,0.0640251524048693,0,0,0,0.192909220463705,0,0.294397840268795,0.342869252385415,0,0,0,0.188218760830661,0.0846146078916765,0.182927972872773,0,0,0,0,0,0,0,0.192906610981141,0.249810577937946,0.233931608445408,0.214871054048298,0,0,0|short_description=p1@uc008unk.1}} | ||
|EntrezGene= | |||
|HGNC= | |||
|MCL_coexpression_id=1438 | |||
|UniProt= | |||
|association_with_transcript=-5bp_to_uc008unk.1_5end | |||
|description=CAGE_peak_1_at_uc008unk.1_5end | |||
|id=chr4:120288421..120288437,+ | |||
|ontology_enrichment_celltype=CL:0002563!1.25e-09!9;CL:0002251!1.25e-09!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.25e-28,9;CL:0002251,1.25e-28,9;CL:0000066,3.71e-20,25;CL:0002076,6.09e-17,15;CL:0002250,9.38e-17,3;CL:0000682,1.20e-16,3;CL:0000239,1.28e-14,6;CL:0000677,1.28e-14,6;CL:0000584,1.28e-14,6;CL:0000075,1.46e-12,7;CL:0000223,1.53e-12,20;CL:0000473,1.98e-07,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!2.32e-16!15;UBERON:0001242!6.37e-14!13;UBERON:0000060!6.37e-14!13;UBERON:0001262!6.37e-14!13;UBERON:0004786!6.37e-14!13;UBERON:0000160!1.02e-13!43;UBERON:0005409!3.29e-13!59;UBERON:0003350!1.25e-09!9;UBERON:0004808!1.25e-09!9;UBERON:0001277!1.25e-09!9;UBERON:0004923!1.82e-08!24;UBERON:0000485!1.82e-07!11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,3.35e-41,15;UBERON:0001242,5.51e-32,13;UBERON:0001262,5.51e-32,13;UBERON:0004786,5.51e-32,13;UBERON:0003350,1.25e-28,9;UBERON:0004808,1.25e-28,9;UBERON:0001277,1.25e-28,9;UBERON:0004923,3.09e-25,24;UBERON:0000485,2.53e-23,11;UBERON:0000160,5.66e-19,31;UBERON:0005409,5.28e-12,47;UBERON:0001962,1.88e-11,2;UBERON:0001961,1.88e-11,2;UBERON:0001744,1.88e-11,2;UBERON:0002465,6.36e-08,3;UBERON:0000331,9.44e-08,3;UBERON:0002116,9.44e-08,3;UBERON:0001204,9.44e-08,3;UBERON:0001168,9.44e-08,3 | |||
|phase1_expression=0,2.79180326111489,5.91499011206397,0.30246421130683,0,11.2479112180966,12.6150825921584,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340173160604279,0,0,6.23970448894286,4.12936705920906,4.01962374880514,6.46142994238612,8.61884930743556,0.570070258369122,1.26015064879965,5.98672378769323,0,0,0,7.51014211353314,4.3221007793208,7.75843553797003,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103689612308478,0,0,0,0,0.122490799214954,0.0958454710182364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0,1.02182822083437,0,0,0,0,0,0.125654352112864,0.173824320192276,0,0,0,0,0.124406970610093,0.252722758433675,0,0,0,0,0.150704817835715,0,0,0.0937017245597288,0,0,0,0,0,0,0,0,0,0,0,0,0.207125772535502,0.234526059981096,0,0,0,0.462801338662135,0,0,0,0,0,0,0.146199987425332,0.219550115291051,0,0,0,0.330418782983798,0.793351699990633,0,0,0.515469845288373,0.403367049246685,0,0,0.949058123089023,0.164698954724011,0.754005626400808,0.198956472041151,0.19496408711912,0,0.864552199498777,1.59313018603494,0,0,0,0,0.193952487167626,0,0,0,0,0,0,0,0,0.224862112384854,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10374698521893,0,0,0,0,0,0,0.215423397732799,0,0,0,0,0,0,0,0.283880170416537,0.178065603667255,0,0.494910368917606,0,0,0,0.188605079755898,0,0,0.258428293168221,0,0,0,0,0,0.340439605753788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291480836629851,0,0,0,0,0,0,0,0,0,0,0,0,0,0.108005340821801,0.418176592028937,0.436725127492355,0.134864346384821,0.165306911450672,0,0.777689839750757,0.621339313086926,0,0,0,0,0,0,0,0,0,0.241584120826006,0,0,0,0,0,0,0,0,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0.187682475451182,0.183151624267265,0,0,0,0,0,0.171853182343688,0,0,0,0,0,0,0,0,0,0.243106717068294,0,0,0.44449345560323,0.206035057238894,0,0,0.25347929989024,0.188626341386076,0,0.0640251524048693,0,0,0,0.192909220463705,0,0.294397840268795,0.342869252385415,0,0,0,0.188218760830661,0.0846146078916765,0.182927972872773,0,0,0,0,0,0,0,0.192906610981141,0.249810577937946,0.233931608445408,0.214871054048298,0,0,0 | |||
|short_description=p1@uc008unk.1 | |||
}} |
Revision as of 03:39, 14 September 2013
Short description: | p1@uc008unk.1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_uc008unk.1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1438 |
Association with transcript: | -5bp_to_uc008unk.1_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.25e-28 | 9 |
epithelial cell of alimentary canal | 1.25e-28 | 9 |
epithelial cell | 3.71e-20 | 25 |
endo-epithelial cell | 6.09e-17 | 15 |
intestinal crypt stem cell | 9.38e-17 | 3 |
M cell of gut | 1.20e-16 | 3 |
brush border epithelial cell | 1.28e-14 | 6 |
gut absorptive cell | 1.28e-14 | 6 |
enterocyte | 1.28e-14 | 6 |
columnar/cuboidal epithelial cell | 1.46e-12 | 7 |
endodermal cell | 1.53e-12 | 20 |
defensive cell | 1.98e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
mucosa | 3.35e-41 | 15 |
intestinal mucosa | 5.51e-32 | 13 |
wall of intestine | 5.51e-32 | 13 |
gastrointestinal system mucosa | 5.51e-32 | 13 |
epithelium of mucosa | 1.25e-28 | 9 |
gastrointestinal system epithelium | 1.25e-28 | 9 |
intestinal epithelium | 1.25e-28 | 9 |
organ component layer | 3.09e-25 | 24 |
simple columnar epithelium | 2.53e-23 | 11 |
intestine | 5.66e-19 | 31 |
gastrointestinal system | 5.28e-12 | 47 |
gut-associated lymphoid tissue | 1.88e-11 | 2 |
mucosa-associated lymphoid tissue | 1.88e-11 | 2 |
lymphoid tissue | 1.88e-11 | 2 |
lymphoid system | 6.36e-08 | 3 |
ileal mucosa | 9.44e-08 | 3 |
ileum | 9.44e-08 | 3 |
mucosa of small intestine | 9.44e-08 | 3 |
wall of small intestine | 9.44e-08 | 3 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.