FFCP PHASE1:Mm9::chr4:106622026..106622035,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=72475|HGNC=|MCL_coexpression_id=51|UniProt=Q3U5B9|association_with_transcript=-12bp_to_ENSMUST00000097933_5end|description=CAGE_peak_15_at_Ssbp3_5end|id=chr4:106622026..106622035,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=CL:0002610,1.88e-08,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0006562!2.97e-25!24;UBERON:0001557!2.97e-25!24;UBERON:0001042!2.97e-25!24;UBERON:0008814!2.97e-25!24;UBERON:0009145!2.97e-25!24;UBERON:0002370!9.18e-23!23;UBERON:0000974!9.18e-23!23;UBERON:0004807!9.18e-23!23;UBERON:0005058!9.18e-23!23;UBERON:0003351!9.18e-23!23;UBERON:0009113!9.18e-23!23;UBERON:0003295!9.18e-23!23;UBERON:0009722!9.18e-23!23;UBERON:0005562!9.18e-23!23;UBERON:0007690!9.18e-23!23;UBERON:0000072!4.36e-22!27;UBERON:0003408!1.09e-21!24;UBERON:0004177!1.96e-17!29;UBERON:0000063!2.69e-16!35;UBERON:0007811!2.90e-15!86;UBERON:0000153!1.54e-13!94;UBERON:0000065!1.94e-13!41;UBERON:0001004!4.84e-13!42;UBERON:0002390!3.49e-10!45;UBERON:0003061!3.49e-10!45;UBERON:0000064!4.82e-10!99;UBERON:0002193!2.30e-09!48;UBERON:0005057!1.21e-08!51;UBERON:0003929!8.31e-08!55;UBERON:0002368!6.41e-07!60|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.91e-09,23;UBERON:0000974,1.91e-09,23;UBERON:0004807,1.91e-09,23;UBERON:0005058,1.91e-09,23;UBERON:0003351,1.91e-09,23;UBERON:0009113,1.91e-09,23;UBERON:0003295,1.91e-09,23;UBERON:0009722,1.91e-09,23;UBERON:0005562,1.91e-09,23;UBERON:0007690,1.91e-09,23;UBERON:0006562,4.35e-09,24;UBERON:0003408,4.35e-09,24;UBERON:0001557,4.35e-09,24;UBERON:0001042,4.35e-09,24;UBERON:0008814,4.35e-09,24;UBERON:0009145,4.35e-09,24;UBERON:0004684,1.88e-08,3;UBERON:0002275,1.88e-08,3;UBERON:0000072,3.59e-08,27;UBERON:0004177,1.15e-07,29;UBERON:0005057,1.15e-07,29|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.794327609607082,0.522399578277871,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103689612308478,0,0,0,0,0,0,0,1.10115880999389,0.127687338085188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11981512450592,0,0.127070227073065,0,0.457500602818626,0,0.695297280769106,0,0.20778804455956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120625849856312,0,0,0,0,0,0,0,0,0,0,0,0,0.138199973804424,0,0,0,0,0,0,0.134864346384821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0.810900861160657,2.87590680061516,1.29920822977795,1.79026695667481,0.79472541912506,0.721172697119813,0.147689527174577,0.403865799792591,0.381034033274999,0.201652370273681,0.194915761479505,0.0962118416403295,0.233753804363138,0.906921534460845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45032120322422,0.453142408984205,0.51776031175182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p15@Ssbp3}} | ||
|EntrezGene=72475 | |||
|HGNC= | |||
|MCL_coexpression_id=51 | |||
|UniProt=Q3U5B9 | |||
|association_with_transcript=-12bp_to_ENSMUST00000097933_5end | |||
|description=CAGE_peak_15_at_Ssbp3_5end | |||
|id=chr4:106622026..106622035,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2=CL:0002610,1.88e-08,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0006562!2.97e-25!24;UBERON:0001557!2.97e-25!24;UBERON:0001042!2.97e-25!24;UBERON:0008814!2.97e-25!24;UBERON:0009145!2.97e-25!24;UBERON:0002370!9.18e-23!23;UBERON:0000974!9.18e-23!23;UBERON:0004807!9.18e-23!23;UBERON:0005058!9.18e-23!23;UBERON:0003351!9.18e-23!23;UBERON:0009113!9.18e-23!23;UBERON:0003295!9.18e-23!23;UBERON:0009722!9.18e-23!23;UBERON:0005562!9.18e-23!23;UBERON:0007690!9.18e-23!23;UBERON:0000072!4.36e-22!27;UBERON:0003408!1.09e-21!24;UBERON:0004177!1.96e-17!29;UBERON:0000063!2.69e-16!35;UBERON:0007811!2.90e-15!86;UBERON:0000153!1.54e-13!94;UBERON:0000065!1.94e-13!41;UBERON:0001004!4.84e-13!42;UBERON:0002390!3.49e-10!45;UBERON:0003061!3.49e-10!45;UBERON:0000064!4.82e-10!99;UBERON:0002193!2.30e-09!48;UBERON:0005057!1.21e-08!51;UBERON:0003929!8.31e-08!55;UBERON:0002368!6.41e-07!60 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,1.91e-09,23;UBERON:0000974,1.91e-09,23;UBERON:0004807,1.91e-09,23;UBERON:0005058,1.91e-09,23;UBERON:0003351,1.91e-09,23;UBERON:0009113,1.91e-09,23;UBERON:0003295,1.91e-09,23;UBERON:0009722,1.91e-09,23;UBERON:0005562,1.91e-09,23;UBERON:0007690,1.91e-09,23;UBERON:0006562,4.35e-09,24;UBERON:0003408,4.35e-09,24;UBERON:0001557,4.35e-09,24;UBERON:0001042,4.35e-09,24;UBERON:0008814,4.35e-09,24;UBERON:0009145,4.35e-09,24;UBERON:0004684,1.88e-08,3;UBERON:0002275,1.88e-08,3;UBERON:0000072,3.59e-08,27;UBERON:0004177,1.15e-07,29;UBERON:0005057,1.15e-07,29 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.794327609607082,0.522399578277871,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103689612308478,0,0,0,0,0,0,0,1.10115880999389,0.127687338085188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11981512450592,0,0.127070227073065,0,0.457500602818626,0,0.695297280769106,0,0.20778804455956,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120625849856312,0,0,0,0,0,0,0,0,0,0,0,0,0.138199973804424,0,0,0,0,0,0,0.134864346384821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0.810900861160657,2.87590680061516,1.29920822977795,1.79026695667481,0.79472541912506,0.721172697119813,0.147689527174577,0.403865799792591,0.381034033274999,0.201652370273681,0.194915761479505,0.0962118416403295,0.233753804363138,0.906921534460845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.45032120322422,0.453142408984205,0.51776031175182,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p15@Ssbp3 | |||
}} |
Revision as of 03:20, 14 September 2013
Short description: | p15@Ssbp3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_15_at_Ssbp3_5end |
Coexpression cluster: | MCL_coexpression_mm9:51 |
Association with transcript: | -12bp_to_ENSMUST00000097933_5end |
EntrezGene: | Ssbp3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
raphe nuclei neuron | 1.88e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
thymus | 1.91e-09 | 23 |
neck | 1.91e-09 | 23 |
respiratory system epithelium | 1.91e-09 | 23 |
hemolymphoid system gland | 1.91e-09 | 23 |
pharyngeal epithelium | 1.91e-09 | 23 |
thymic region | 1.91e-09 | 23 |
pharyngeal gland | 1.91e-09 | 23 |
entire pharyngeal arch endoderm | 1.91e-09 | 23 |
thymus primordium | 1.91e-09 | 23 |
early pharyngeal endoderm | 1.91e-09 | 23 |
pharynx | 4.35e-09 | 24 |
gland of gut | 4.35e-09 | 24 |
upper respiratory tract | 4.35e-09 | 24 |
chordate pharynx | 4.35e-09 | 24 |
pharyngeal arch system | 4.35e-09 | 24 |
pharyngeal region of foregut | 4.35e-09 | 24 |
raphe nuclei | 1.88e-08 | 3 |
reticular formation | 1.88e-08 | 3 |
segment of respiratory tract | 3.59e-08 | 27 |
hemopoietic organ | 1.15e-07 | 29 |
immune organ | 1.15e-07 | 29 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.