FFCP PHASE1:Mm9::chr2:90585696..90585760,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=55935|HGNC=|MCL_coexpression_id=540|UniProt=|association_with_transcript=0bp_to_ENSMUST00000123314_5end|description=CAGE_peak_1_at_Fnbp4_5end|id=chr2:90585696..90585760,+|ontology_enrichment_celltype=CL:0002031!3.01e-08!25;CL:0000838!4.33e-08!12;CL:0000988!4.45e-08!32;CL:0002032!4.45e-08!32;CL:0000037!4.45e-08!32;CL:0000566!4.45e-08!32;CL:0000837!4.45e-08!32;CL:0000542!7.50e-08!13;CL:0000051!7.50e-08!13;CL:0000084!1.86e-07!11;CL:0000827!1.86e-07!11;CL:0000791!5.03e-07!9;CL:0000789!5.03e-07!9;CL:0002420!5.03e-07!9;CL:0002419!5.03e-07!9;CL:0000790!5.03e-07!9|ontology_enrichment_celltype_v019_2=CL:0002031,3.01e-08,25;CL:0000838,4.33e-08,12;CL:0000988,4.45e-08,32;CL:0002032,4.45e-08,32;CL:0000037,4.45e-08,32;CL:0000837,4.45e-08,32;CL:0000542,7.50e-08,13;CL:0000051,7.50e-08,13;CL:0000084,1.86e-07,11;CL:0000827,1.86e-07,11;CL:0000791,5.03e-07,9;CL:0000789,5.03e-07,9;CL:0002420,5.03e-07,9;CL:0002419,5.03e-07,9;CL:0000790,5.03e-07,9|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004177!4.50e-12!29;UBERON:0002370!4.58e-11!23;UBERON:0000974!4.58e-11!23;UBERON:0004807!4.58e-11!23;UBERON:0005058!4.58e-11!23;UBERON:0003351!4.58e-11!23;UBERON:0009113!4.58e-11!23;UBERON:0003295!4.58e-11!23;UBERON:0009722!4.58e-11!23;UBERON:0005562!4.58e-11!23;UBERON:0007690!4.58e-11!23;UBERON:0003408!1.42e-10!24;UBERON:0006562!1.85e-10!24;UBERON:0001557!1.85e-10!24;UBERON:0001042!1.85e-10!24;UBERON:0008814!1.85e-10!24;UBERON:0009145!1.85e-10!24;UBERON:0002390!9.39e-10!45;UBERON:0003061!9.39e-10!45;UBERON:0002193!6.75e-09!48;UBERON:0000065!4.31e-08!41;UBERON:0001004!7.12e-08!42;UBERON:0000072!9.43e-08!27|ontology_enrichment_uberon_v019_2=UBERON:0004177,4.50e-12,29;UBERON:0005057,4.50e-12,29;UBERON:0002370,4.58e-11,23;UBERON:0000974,4.58e-11,23;UBERON:0004807,4.58e-11,23;UBERON:0005058,4.58e-11,23;UBERON:0003351,4.58e-11,23;UBERON:0009113,4.58e-11,23;UBERON:0003295,4.58e-11,23;UBERON:0009722,4.58e-11,23;UBERON:0005562,4.58e-11,23;UBERON:0007690,4.58e-11,23;UBERON:0003408,1.42e-10,24;UBERON:0006562,1.85e-10,24;UBERON:0001557,1.85e-10,24;UBERON:0001042,1.85e-10,24;UBERON:0008814,1.85e-10,24;UBERON:0009145,1.85e-10,24;UBERON:0000077,8.60e-10,35;UBERON:0002390,9.39e-10,45;UBERON:0003061,9.39e-10,45;UBERON:0002193,6.75e-09,48;UBERON:0002405,6.75e-09,48;UBERON:0007811,3.24e-08,36;UBERON:0000065,4.31e-08,41;UBERON:0001004,7.12e-08,42;UBERON:0000153,7.50e-08,43;UBERON:0000072,9.43e-08,27|phase1_expression=38.115425610941,24.4282785347553,19.1099680543605,50.8139874995474,47.0841986149566,40.6267838026773,34.1074455269467,71.4051978631917,172.32539591364,205.274589584388,58.7277631013482,66.6097527611059,98.6116204403745,99.047315940724,61.2921961740819,74.3084231320661,82.5483016191213,90.5376414578142,101.876024169064,103.551075038719,30.7006277445362,48.1561113324294,51.4563584603703,22.7189240366637,23.3997466688513,22.3950466004858,20.6765758156356,23.4863643627619,14.8218267175972,26.4631636247927,19.7340154483221,44.4521471421742,48.590118219181,15.8481681015439,49.9713302169705,28.4261243563022,47.7756293653944,53.5720487343242,42.973443948809,44.4995182377729,68.2348526115977,66.2554120409692,39.8118489485546,30.970617221992,30.6158332282934,27.3484660720905,18.7773922643529,8.50298109883741,5.71184075109627,10.304784650937,14.5585878490377,4.31257693094915,90.7703898772354,146.523152686292,146.536896426114,21.3525331909836,20.057340795713,29.9089813520917,34.3937983461316,44.9642332381228,38.6637156138769,9.14880236586657,14.2287167377782,15.2982951937838,12.8552627133707,7.104801149461,10.7856039786626,9.60545763303886,40.2315695756893,40.6367874378389,33.4416688548697,20.5668708770739,20.3199057675484,37.1147121621311,43.6096893132975,46.8801581171111,36.3382407297983,24.3882815742709,23.0409799884365,46.4239732810282,37.6014215205904,49.4867702028922,21.217907924105,29.2636557216474,27.9620793431563,35.3554302568401,29.3285662446152,35.4158947068071,20.2946198132933,21.2356083900067,84.3505662121882,22.371020801516,21.0791113449403,19.9690180905992,25.3412802804591,42.1145273871495,17.9768857768642,14.4865774191349,12.9893002301434,19.7870161725791,30.7038655113164,61.5967091588726,117.210410265057,85.3280043783997,26.1954159623569,21.5355885653834,27.8038444758131,24.0927986207217,104.093029226163,36.8136504880765,27.9311376093479,27.7063585264048,26.9820131789588,28.335856423893,52.9149182110672,25.2589848572648,31.8881508377342,36.8728360145775,48.6535803572431,26.8532970912699,44.3891452105391,56.730404616821,48.4618579167118,62.6550905604711,61.7867785099692,28.8666472385708,63.3822008636318,38.9936775145715,54.6401976414178,32.5045687508465,32.4825428001225,48.6282342676785,33.8957424374939,41.6816195448439,29.7136903720171,36.828766716381,44.5038020025882,50.7580440089179,33.3594041132451,36.40644106836,43.460227949543,24.1397209655147,34.9320531822378,38.4297285481073,54.7013453176676,42.5337551345701,41.0413553571612,56.1386314503664,35.1375828480533,46.1418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| ||
|EntrezGene=55935 | |||
|HGNC= | |||
|MCL_coexpression_id=540 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000123314_5end | |||
|description=CAGE_peak_1_at_Fnbp4_5end | |||
|id=chr2:90585696..90585760,+ | |||
|ontology_enrichment_celltype=CL:0002031!3.01e-08!25;CL:0000838!4.33e-08!12;CL:0000988!4.45e-08!32;CL:0002032!4.45e-08!32;CL:0000037!4.45e-08!32;CL:0000566!4.45e-08!32;CL:0000837!4.45e-08!32;CL:0000542!7.50e-08!13;CL:0000051!7.50e-08!13;CL:0000084!1.86e-07!11;CL:0000827!1.86e-07!11;CL:0000791!5.03e-07!9;CL:0000789!5.03e-07!9;CL:0002420!5.03e-07!9;CL:0002419!5.03e-07!9;CL:0000790!5.03e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002031,3.01e-08,25;CL:0000838,4.33e-08,12;CL:0000988,4.45e-08,32;CL:0002032,4.45e-08,32;CL:0000037,4.45e-08,32;CL:0000837,4.45e-08,32;CL:0000542,7.50e-08,13;CL:0000051,7.50e-08,13;CL:0000084,1.86e-07,11;CL:0000827,1.86e-07,11;CL:0000791,5.03e-07,9;CL:0000789,5.03e-07,9;CL:0002420,5.03e-07,9;CL:0002419,5.03e-07,9;CL:0000790,5.03e-07,9 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004177!4.50e-12!29;UBERON:0002370!4.58e-11!23;UBERON:0000974!4.58e-11!23;UBERON:0004807!4.58e-11!23;UBERON:0005058!4.58e-11!23;UBERON:0003351!4.58e-11!23;UBERON:0009113!4.58e-11!23;UBERON:0003295!4.58e-11!23;UBERON:0009722!4.58e-11!23;UBERON:0005562!4.58e-11!23;UBERON:0007690!4.58e-11!23;UBERON:0003408!1.42e-10!24;UBERON:0006562!1.85e-10!24;UBERON:0001557!1.85e-10!24;UBERON:0001042!1.85e-10!24;UBERON:0008814!1.85e-10!24;UBERON:0009145!1.85e-10!24;UBERON:0002390!9.39e-10!45;UBERON:0003061!9.39e-10!45;UBERON:0002193!6.75e-09!48;UBERON:0000065!4.31e-08!41;UBERON:0001004!7.12e-08!42;UBERON:0000072!9.43e-08!27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004177,4.50e-12,29;UBERON:0005057,4.50e-12,29;UBERON:0002370,4.58e-11,23;UBERON:0000974,4.58e-11,23;UBERON:0004807,4.58e-11,23;UBERON:0005058,4.58e-11,23;UBERON:0003351,4.58e-11,23;UBERON:0009113,4.58e-11,23;UBERON:0003295,4.58e-11,23;UBERON:0009722,4.58e-11,23;UBERON:0005562,4.58e-11,23;UBERON:0007690,4.58e-11,23;UBERON:0003408,1.42e-10,24;UBERON:0006562,1.85e-10,24;UBERON:0001557,1.85e-10,24;UBERON:0001042,1.85e-10,24;UBERON:0008814,1.85e-10,24;UBERON:0009145,1.85e-10,24;UBERON:0000077,8.60e-10,35;UBERON:0002390,9.39e-10,45;UBERON:0003061,9.39e-10,45;UBERON:0002193,6.75e-09,48;UBERON:0002405,6.75e-09,48;UBERON:0007811,3.24e-08,36;UBERON:0000065,4.31e-08,41;UBERON:0001004,7.12e-08,42;UBERON:0000153,7.50e-08,43;UBERON:0000072,9.43e-08,27 | |||
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| |||
|short_description=p1@Fnbp4 | |||
}} |
Revision as of 00:49, 14 September 2013
Short description: | p1@Fnbp4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Fnbp4_5end |
Coexpression cluster: | MCL_coexpression_mm9:540 |
Association with transcript: | 0bp_to_ENSMUST00000123314_5end |
EntrezGene: | Fnbp4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic lineage restricted progenitor cell | 3.01e-08 | 25 |
lymphoid lineage restricted progenitor cell | 4.33e-08 | 12 |
hematopoietic cell | 4.45e-08 | 32 |
hematopoietic oligopotent progenitor cell | 4.45e-08 | 32 |
hematopoietic stem cell | 4.45e-08 | 32 |
hematopoietic multipotent progenitor cell | 4.45e-08 | 32 |
lymphocyte | 7.50e-08 | 13 |
common lymphoid progenitor | 7.50e-08 | 13 |
T cell | 1.86e-07 | 11 |
pro-T cell | 1.86e-07 | 11 |
mature alpha-beta T cell | 5.03e-07 | 9 |
alpha-beta T cell | 5.03e-07 | 9 |
immature T cell | 5.03e-07 | 9 |
mature T cell | 5.03e-07 | 9 |
immature alpha-beta T cell | 5.03e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
hemopoietic organ | 4.50e-12 | 29 |
immune organ | 4.50e-12 | 29 |
thymus | 4.58e-11 | 23 |
neck | 4.58e-11 | 23 |
respiratory system epithelium | 4.58e-11 | 23 |
hemolymphoid system gland | 4.58e-11 | 23 |
pharyngeal epithelium | 4.58e-11 | 23 |
thymic region | 4.58e-11 | 23 |
pharyngeal gland | 4.58e-11 | 23 |
entire pharyngeal arch endoderm | 4.58e-11 | 23 |
thymus primordium | 4.58e-11 | 23 |
early pharyngeal endoderm | 4.58e-11 | 23 |
gland of gut | 1.42e-10 | 24 |
pharynx | 1.85e-10 | 24 |
upper respiratory tract | 1.85e-10 | 24 |
chordate pharynx | 1.85e-10 | 24 |
pharyngeal arch system | 1.85e-10 | 24 |
pharyngeal region of foregut | 1.85e-10 | 24 |
mixed endoderm/mesoderm-derived structure | 8.60e-10 | 35 |
hematopoietic system | 9.39e-10 | 45 |
blood island | 9.39e-10 | 45 |
hemolymphoid system | 6.75e-09 | 48 |
immune system | 6.75e-09 | 48 |
craniocervical region | 3.24e-08 | 36 |
respiratory tract | 4.31e-08 | 41 |
respiratory system | 7.12e-08 | 42 |
anterior region of body | 7.50e-08 | 43 |
segment of respiratory tract | 9.43e-08 | 27 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.