FFCP PHASE1:Mm9::chr2:34817271..34817308,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=22029|HGNC=|MCL_coexpression_id=102|UniProt=P39428,Q8C245|association_with_transcript=0bp_to_ENSMUST00000113064,ENSMUST00000168557,NM_009421,uc008jjk.1,uc008jjl.1,uc008jjm.1_5end|description=CAGE_peak_4_at_Traf1_5end|id=chr2:34817271..34817308,-|ontology_enrichment_celltype=CL:0000791!2.47e-12!9;CL:0000789!2.47e-12!9;CL:0002420!2.47e-12!9;CL:0002419!2.47e-12!9;CL:0000790!2.47e-12!9;CL:0000838!3.27e-12!12;CL:0000084!3.55e-11!11;CL:0000827!3.55e-11!11;CL:0000624!4.13e-11!8;CL:0000542!5.46e-11!13;CL:0000051!5.46e-11!13;CL:0000738!2.89e-09!17;CL:0002087!2.89e-09!17;CL:0000893!1.14e-08!6;CL:0002489!1.14e-08!6;CL:0000898!1.14e-08!6;CL:0000809!1.14e-08!6;CL:0000810!1.14e-08!6;CL:0000895!1.14e-08!6;CL:0000808!1.14e-08!6;CL:0000894!1.14e-08!6;CL:0000806!1.14e-08!6;CL:0000807!1.14e-08!6;CL:0000805!1.14e-08!6;CL:0002425!1.14e-08!6;CL:0002436!1.14e-08!6;CL:0002427!1.14e-08!6;CL:0002428!1.14e-08!6;CL:0002429!1.14e-08!6;CL:0002433!1.14e-08!6;CL:0002431!1.14e-08!6;CL:0002432!1.14e-08!6;CL:0002031!3.64e-07!25|ontology_enrichment_celltype_v019_2=CL:0000791,7.12e-41,9;CL:0000789,7.12e-41,9;CL:0002420,7.12e-41,9;CL:0002419,7.12e-41,9;CL:0000790,7.12e-41,9;CL:0000838,5.47e-37,12;CL:0000624,2.23e-36,8;CL:0000542,4.91e-34,13;CL:0000051,4.91e-34,13;CL:0000084,3.14e-33,11;CL:0000827,3.14e-33,11;CL:0000738,4.32e-31,17;CL:0002087,4.32e-31,17;CL:0000893,1.91e-27,6;CL:0002489,1.91e-27,6;CL:0000898,1.91e-27,6;CL:0000809,1.91e-27,6;CL:0000810,1.91e-27,6;CL:0000895,1.91e-27,6;CL:0000808,1.91e-27,6;CL:0000894,1.91e-27,6;CL:0000806,1.91e-27,6;CL:0000807,1.91e-27,6;CL:0000805,1.91e-27,6;CL:0002425,1.91e-27,6;CL:0002436,1.91e-27,6;CL:0002427,1.91e-27,6;CL:0002428,1.91e-27,6;CL:0002429,1.91e-27,6;CL:0002433,1.91e-27,6;CL:0002431,1.91e-27,6;CL:0002432,1.91e-27,6;CL:0002031,1.32e-20,25;CL:0000988,1.01e-15,32;CL:0002032,1.01e-15,32;CL:0000037,1.01e-15,32;CL:0000837,1.01e-15,32;CL:0002320,2.11e-10,46;CL:0000134,2.11e-10,46;CL:0000219,2.81e-10,54;CL:0000034,6.54e-07,97|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000065!2.39e-11!41;UBERON:0001004!6.81e-11!42;UBERON:0002370!2.21e-09!23;UBERON:0000974!2.21e-09!23;UBERON:0004807!2.21e-09!23;UBERON:0005058!2.21e-09!23;UBERON:0003351!2.21e-09!23;UBERON:0009113!2.21e-09!23;UBERON:0003295!2.21e-09!23;UBERON:0009722!2.21e-09!23;UBERON:0005562!2.21e-09!23;UBERON:0007690!2.21e-09!23;UBERON:0006562!8.62e-09!24;UBERON:0003408!8.62e-09!24;UBERON:0001557!8.62e-09!24;UBERON:0001042!8.62e-09!24;UBERON:0008814!8.62e-09!24;UBERON:0009145!8.62e-09!24;UBERON:0005153!7.02e-08!17;UBERON:0004177!1.47e-07!29;UBERON:0000072!2.68e-07!27|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.11e-10,46;UBERON:0010147,6.34e-10,2;UBERON:0003937,6.34e-10,2;UBERON:0005399,6.34e-10,2;UBERON:0001911,1.58e-09,2;UBERON:0000076,1.58e-09,2;UBERON:0005333,1.58e-09,2;UBERON:0008425,1.58e-09,2;UBERON:0005311,1.58e-09,2;UBERON:0002370,8.40e-07,23;UBERON:0000974,8.40e-07,23;UBERON:0004807,8.40e-07,23;UBERON:0005058,8.40e-07,23;UBERON:0003351,8.40e-07,23;UBERON:0009113,8.40e-07,23;UBERON:0003295,8.40e-07,23;UBERON:0009722,8.40e-07,23;UBERON:0005562,8.40e-07,23;UBERON:0007690,8.40e-07,23|phase1_expression=0.160148847104794,0,0,0,0,0,0,12.1375924035082,31.9590399284283,24.5767752638093,4.79410311031414,2.07407613387875,10.1008430659411,3.93391810885488,0,0,0,0.630924330716475,0.274228867211478,0,0.17008658030214,0.0992909512008853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183546752161682,0,0.65407546914134,0.219686182734472,0.777719596297134,0.419959264876088,1.43752564364972,1.17447824240415,18.1340535502836,13.4437519656986,0,0,0,0.202316460859598,0,0,0,0,0,0,0,0,3.45796474789399,0,0,0,0,0.220868540951614,0,0,0,0,0,0,0,0,0,0.279182999001381,0,0,0.883885756421003,0.284743361598206,0,0.075726193333184,0.0755715601067855,0.289864488701678,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0.258937883647172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.628340120440365,0,0.239630249011841,0,0.508280908292259,0.299581278809645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0680364991513279,0,0.0937017245597288,0,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0.205809224758569,0.660837565967596,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0.189667900953082,0.228497025219458,0,0.407302655690628,0,0,0.0632365371242573,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.739012760666419,0,0,0,0,0.335012514883631,0,0.390267295715598,0.630540576424764,0.221464689648775,0.478364305972461,0.655453258862952,0.345369963731791,1.3018415272336,0,0,2.45882136509518,1.37968373152366,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0.129358683782755,0,0,0,0,0.304464949114599,0,0,2.42581237860458,0.49465875882444,0.484393280087717,0.120625849856312,0.716234064018819,0.328281799490123,0,0,0.512612642393558,0,0,0,0,0,2.20971958992012,2.37917468950219,3.45499934511059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0.129920822977795,0,0.198681354781265,0.120195449519969,0.295379054349154,0.100966449948148,0.0762068066549998,0.100826185136841,0.0974578807397524,0.288635524920988,0.233753804363138,0,0,0,0,0,0,0,0,4.01257683228291,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0640251524048693,0.0574354689556133,0,0.231768651889711,0,0,0,0,0.177475806159338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p4@Traf1}} | ||
|EntrezGene=22029 | |||
|HGNC= | |||
|MCL_coexpression_id=102 | |||
|UniProt=P39428,Q8C245 | |||
|association_with_transcript=0bp_to_ENSMUST00000113064,ENSMUST00000168557,NM_009421,uc008jjk.1,uc008jjl.1,uc008jjm.1_5end | |||
|description=CAGE_peak_4_at_Traf1_5end | |||
|id=chr2:34817271..34817308,- | |||
|ontology_enrichment_celltype=CL:0000791!2.47e-12!9;CL:0000789!2.47e-12!9;CL:0002420!2.47e-12!9;CL:0002419!2.47e-12!9;CL:0000790!2.47e-12!9;CL:0000838!3.27e-12!12;CL:0000084!3.55e-11!11;CL:0000827!3.55e-11!11;CL:0000624!4.13e-11!8;CL:0000542!5.46e-11!13;CL:0000051!5.46e-11!13;CL:0000738!2.89e-09!17;CL:0002087!2.89e-09!17;CL:0000893!1.14e-08!6;CL:0002489!1.14e-08!6;CL:0000898!1.14e-08!6;CL:0000809!1.14e-08!6;CL:0000810!1.14e-08!6;CL:0000895!1.14e-08!6;CL:0000808!1.14e-08!6;CL:0000894!1.14e-08!6;CL:0000806!1.14e-08!6;CL:0000807!1.14e-08!6;CL:0000805!1.14e-08!6;CL:0002425!1.14e-08!6;CL:0002436!1.14e-08!6;CL:0002427!1.14e-08!6;CL:0002428!1.14e-08!6;CL:0002429!1.14e-08!6;CL:0002433!1.14e-08!6;CL:0002431!1.14e-08!6;CL:0002432!1.14e-08!6;CL:0002031!3.64e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,7.12e-41,9;CL:0000789,7.12e-41,9;CL:0002420,7.12e-41,9;CL:0002419,7.12e-41,9;CL:0000790,7.12e-41,9;CL:0000838,5.47e-37,12;CL:0000624,2.23e-36,8;CL:0000542,4.91e-34,13;CL:0000051,4.91e-34,13;CL:0000084,3.14e-33,11;CL:0000827,3.14e-33,11;CL:0000738,4.32e-31,17;CL:0002087,4.32e-31,17;CL:0000893,1.91e-27,6;CL:0002489,1.91e-27,6;CL:0000898,1.91e-27,6;CL:0000809,1.91e-27,6;CL:0000810,1.91e-27,6;CL:0000895,1.91e-27,6;CL:0000808,1.91e-27,6;CL:0000894,1.91e-27,6;CL:0000806,1.91e-27,6;CL:0000807,1.91e-27,6;CL:0000805,1.91e-27,6;CL:0002425,1.91e-27,6;CL:0002436,1.91e-27,6;CL:0002427,1.91e-27,6;CL:0002428,1.91e-27,6;CL:0002429,1.91e-27,6;CL:0002433,1.91e-27,6;CL:0002431,1.91e-27,6;CL:0002432,1.91e-27,6;CL:0002031,1.32e-20,25;CL:0000988,1.01e-15,32;CL:0002032,1.01e-15,32;CL:0000037,1.01e-15,32;CL:0000837,1.01e-15,32;CL:0002320,2.11e-10,46;CL:0000134,2.11e-10,46;CL:0000219,2.81e-10,54;CL:0000034,6.54e-07,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000065!2.39e-11!41;UBERON:0001004!6.81e-11!42;UBERON:0002370!2.21e-09!23;UBERON:0000974!2.21e-09!23;UBERON:0004807!2.21e-09!23;UBERON:0005058!2.21e-09!23;UBERON:0003351!2.21e-09!23;UBERON:0009113!2.21e-09!23;UBERON:0003295!2.21e-09!23;UBERON:0009722!2.21e-09!23;UBERON:0005562!2.21e-09!23;UBERON:0007690!2.21e-09!23;UBERON:0006562!8.62e-09!24;UBERON:0003408!8.62e-09!24;UBERON:0001557!8.62e-09!24;UBERON:0001042!8.62e-09!24;UBERON:0008814!8.62e-09!24;UBERON:0009145!8.62e-09!24;UBERON:0005153!7.02e-08!17;UBERON:0004177!1.47e-07!29;UBERON:0000072!2.68e-07!27 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.11e-10,46;UBERON:0010147,6.34e-10,2;UBERON:0003937,6.34e-10,2;UBERON:0005399,6.34e-10,2;UBERON:0001911,1.58e-09,2;UBERON:0000076,1.58e-09,2;UBERON:0005333,1.58e-09,2;UBERON:0008425,1.58e-09,2;UBERON:0005311,1.58e-09,2;UBERON:0002370,8.40e-07,23;UBERON:0000974,8.40e-07,23;UBERON:0004807,8.40e-07,23;UBERON:0005058,8.40e-07,23;UBERON:0003351,8.40e-07,23;UBERON:0009113,8.40e-07,23;UBERON:0003295,8.40e-07,23;UBERON:0009722,8.40e-07,23;UBERON:0005562,8.40e-07,23;UBERON:0007690,8.40e-07,23 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0,0,12.1375924035082,31.9590399284283,24.5767752638093,4.79410311031414,2.07407613387875,10.1008430659411,3.93391810885488,0,0,0,0.630924330716475,0.274228867211478,0,0.17008658030214,0.0992909512008853,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183546752161682,0,0.65407546914134,0.219686182734472,0.777719596297134,0.419959264876088,1.43752564364972,1.17447824240415,18.1340535502836,13.4437519656986,0,0,0,0.202316460859598,0,0,0,0,0,0,0,0,3.45796474789399,0,0,0,0,0.220868540951614,0,0,0,0,0,0,0,0,0,0.279182999001381,0,0,0.883885756421003,0.284743361598206,0,0.075726193333184,0.0755715601067855,0.289864488701678,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.11418387971906,0.258937883647172,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.628340120440365,0,0.239630249011841,0,0.508280908292259,0.299581278809645,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0680364991513279,0,0.0937017245597288,0,0,0,0,0.219195732427575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.210289948564127,0.205809224758569,0.660837565967596,0,0,0,0,0,0,0,0,0,0,0.198956472041151,0,0,0,0,0.189667900953082,0.228497025219458,0,0.407302655690628,0,0,0.0632365371242573,0,0,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.739012760666419,0,0,0,0,0.335012514883631,0,0.390267295715598,0.630540576424764,0.221464689648775,0.478364305972461,0.655453258862952,0.345369963731791,1.3018415272336,0,0,2.45882136509518,1.37968373152366,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.340439605753788,0,0.129358683782755,0,0,0,0,0.304464949114599,0,0,2.42581237860458,0.49465875882444,0.484393280087717,0.120625849856312,0.716234064018819,0.328281799490123,0,0,0.512612642393558,0,0,0,0,0,2.20971958992012,2.37917468950219,3.45499934511059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0.129920822977795,0,0.198681354781265,0.120195449519969,0.295379054349154,0.100966449948148,0.0762068066549998,0.100826185136841,0.0974578807397524,0.288635524920988,0.233753804363138,0,0,0,0,0,0,0,0,4.01257683228291,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0640251524048693,0.0574354689556133,0,0.231768651889711,0,0,0,0,0.177475806159338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p4@Traf1 | |||
}} |
Revision as of 23:54, 13 September 2013
Short description: | p4@Traf1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Traf1_5end |
Coexpression cluster: | MCL_coexpression_mm9:102 |
Association with transcript: | 0bp_to_ENSMUST00000113064, ENSMUST00000168557, NM_009421, uc008jjk.1, uc008jjl.1, uc008jjm.1_5end |
EntrezGene: | Traf1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
connective tissue | 2.11e-10 | 46 |
male accessory sex gland | 6.34e-10 | 2 |
sex gland | 6.34e-10 | 2 |
male reproductive gland | 6.34e-10 | 2 |
mammary gland | 1.58e-09 | 2 |
external ectoderm | 1.58e-09 | 2 |
mammary bud | 1.58e-09 | 2 |
mammary ridge | 1.58e-09 | 2 |
mammary placode | 1.58e-09 | 2 |
thymus | 8.40e-07 | 23 |
neck | 8.40e-07 | 23 |
respiratory system epithelium | 8.40e-07 | 23 |
hemolymphoid system gland | 8.40e-07 | 23 |
pharyngeal epithelium | 8.40e-07 | 23 |
thymic region | 8.40e-07 | 23 |
pharyngeal gland | 8.40e-07 | 23 |
entire pharyngeal arch endoderm | 8.40e-07 | 23 |
thymus primordium | 8.40e-07 | 23 |
early pharyngeal endoderm | 8.40e-07 | 23 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.