FFCP PHASE1:Mm9::chr1:60965992..60966003,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=100505288,12477|HGNC=|MCL_coexpression_id=29|UniProt=Q5SSM0|association_with_transcript=-11bp_to_ENSMUST00000097720,ENSMUST00000144147_5end|description=CAGE_peak_3_at_Ctla4_5end,CAGE_peak_3_at_LOC100505288_5end|id=chr1:60965992..60966003,+|ontology_enrichment_celltype=CL:0000838!3.56e-29!12;CL:0000084!5.62e-27!11;CL:0000827!5.62e-27!11;CL:0000542!1.03e-26!13;CL:0000051!1.03e-26!13;CL:0000791!8.70e-23!9;CL:0000789!8.70e-23!9;CL:0002420!8.70e-23!9;CL:0002419!8.70e-23!9;CL:0000790!8.70e-23!9;CL:0000624!2.85e-20!8;CL:0002031!5.47e-20!25;CL:0000738!9.05e-20!17;CL:0002087!9.05e-20!17;CL:0000893!3.38e-15!6;CL:0002489!3.38e-15!6;CL:0000898!3.38e-15!6;CL:0000809!3.38e-15!6;CL:0000810!3.38e-15!6;CL:0000895!3.38e-15!6;CL:0000808!3.38e-15!6;CL:0000894!3.38e-15!6;CL:0000806!3.38e-15!6;CL:0000807!3.38e-15!6;CL:0000805!3.38e-15!6;CL:0002425!3.38e-15!6;CL:0002436!3.38e-15!6;CL:0002427!3.38e-15!6;CL:0002428!3.38e-15!6;CL:0002429!3.38e-15!6;CL:0002433!3.38e-15!6;CL:0002431!3.38e-15!6;CL:0002432!3.38e-15!6;CL:0000988!7.98e-15!32;CL:0002032!7.98e-15!32;CL:0000037!7.98e-15!32;CL:0000566!7.98e-15!32;CL:0000837!7.98e-15!32;CL:0002320!3.06e-09!46;CL:0000134!3.06e-09!46;CL:0000219!2.27e-07!54|ontology_enrichment_celltype_v019_2=CL:0000791,2.18e-59,9;CL:0000789,2.18e-59,9;CL:0002420,2.18e-59,9;CL:0002419,2.18e-59,9;CL:0000790,2.18e-59,9;CL:0000624,3.83e-49,8;CL:0000084,1.18e-48,11;CL:0000827,1.18e-48,11;CL:0000838,1.26e-44,12;CL:0000542,3.24e-41,13;CL:0000051,3.24e-41,13;CL:0000738,1.40e-31,17;CL:0002087,1.40e-31,17;CL:0000893,3.35e-29,6;CL:0002489,3.35e-29,6;CL:0000898,3.35e-29,6;CL:0000809,3.35e-29,6;CL:0000810,3.35e-29,6;CL:0000895,3.35e-29,6;CL:0000808,3.35e-29,6;CL:0000894,3.35e-29,6;CL:0000806,3.35e-29,6;CL:0000807,3.35e-29,6;CL:0000805,3.35e-29,6;CL:0002425,3.35e-29,6;CL:0002436,3.35e-29,6;CL:0002427,3.35e-29,6;CL:0002428,3.35e-29,6;CL:0002429,3.35e-29,6;CL:0002433,3.35e-29,6;CL:0002431,3.35e-29,6;CL:0002432,3.35e-29,6;CL:0002031,1.57e-21,25;CL:0000988,7.62e-17,32;CL:0002032,7.62e-17,32;CL:0000037,7.62e-17,32;CL:0000837,7.62e-17,32;CL:0000815,1.20e-12,1;CL:0000792,1.20e-12,1;CL:0000625,2.01e-12,1;CL:0002320,1.00e-11,46;CL:0000134,1.00e-11,46;CL:0000219,5.55e-10,54|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002370!1.22e-38!23;UBERON:0000974!1.22e-38!23;UBERON:0004807!1.22e-38!23;UBERON:0005058!1.22e-38!23;UBERON:0003351!1.22e-38!23;UBERON:0009113!1.22e-38!23;UBERON:0003295!1.22e-38!23;UBERON:0009722!1.22e-38!23;UBERON:0005562!1.22e-38!23;UBERON:0007690!1.22e-38!23;UBERON:0006562!7.92e-37!24;UBERON:0003408!7.92e-37!24;UBERON:0001557!7.92e-37!24;UBERON:0001042!7.92e-37!24;UBERON:0008814!7.92e-37!24;UBERON:0009145!7.92e-37!24;UBERON:0004177!1.09e-32!29;UBERON:0000072!3.38e-32!27;UBERON:0002193!4.59e-31!48;UBERON:0000063!2.73e-26!35;UBERON:0002390!3.96e-26!45;UBERON:0003061!3.96e-26!45;UBERON:0000065!7.34e-22!41;UBERON:0001004!3.21e-21!42;UBERON:0002405!2.33e-19!70;UBERON:0005057!2.02e-16!51;UBERON:0003929!2.30e-13!55;UBERON:0002368!3.31e-13!60;UBERON:0003081!6.33e-13!88;UBERON:0002530!8.17e-12!65;UBERON:0005911!5.69e-11!69;UBERON:0000490!2.33e-10!66;UBERON:0000949!3.41e-10!72;UBERON:0000064!1.33e-09!99;UBERON:0002384!3.06e-09!46;UBERON:0001041!6.88e-08!92;UBERON:0000153!1.44e-07!94;UBERON:0000077!3.14e-07!97;UBERON:0002465!4.15e-07!3;UBERON:0007811!6.70e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0002370,5.79e-12,23;UBERON:0000974,5.79e-12,23;UBERON:0004807,5.79e-12,23;UBERON:0005058,5.79e-12,23;UBERON:0003351,5.79e-12,23;UBERON:0009113,5.79e-12,23;UBERON:0003295,5.79e-12,23;UBERON:0009722,5.79e-12,23;UBERON:0005562,5.79e-12,23;UBERON:0007690,5.79e-12,23;UBERON:0002384,1.00e-11,46;UBERON:0006562,1.78e-11,24;UBERON:0003408,1.78e-11,24;UBERON:0001557,1.78e-11,24;UBERON:0001042,1.78e-11,24;UBERON:0008814,1.78e-11,24;UBERON:0009145,1.78e-11,24;UBERON:0000072,3.17e-10,27;UBERON:0004177,1.56e-09,29;UBERON:0005057,1.56e-09,29;UBERON:0000077,6.28e-08,35;UBERON:0007811,1.03e-07,36;UBERON:0000065,8.69e-07,41|phase1_expression=0,0,0,0,0,0,0,38.091380415265,4.78681655315667,3.04283884218592,0.34243593645101,0.239316476986009,6.50562773738582,1.48614684112296,0,0,0,0.315462165358238,0.685572168028694,0.42438965179803,0,0.297872853602656,0.522399578277871,0.159992422793407,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503347818173209,10.1550699881588,8.06625117941913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258937883647172,0,0.173485326766136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255457055208591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.554259570499814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188368457004691,0,0,0,0,0.138199973804424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.632022241256357,0.405450430580328,0.718976700153791,0.909445760844565,1.07416017400489,0.79472541912506,0.360586348559907,0.295379054349154,0.605798699688886,0.304827226619999,0.100826185136841,0.487289403698762,0.192423683280659,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p3@Ctla4,p3@LOC100505288}} | ||
|EntrezGene=100505288,12477 | |||
|HGNC= | |||
|MCL_coexpression_id=29 | |||
|UniProt=Q5SSM0 | |||
|association_with_transcript=-11bp_to_ENSMUST00000097720,ENSMUST00000144147_5end | |||
|description=CAGE_peak_3_at_Ctla4_5end,CAGE_peak_3_at_LOC100505288_5end | |||
|id=chr1:60965992..60966003,+ | |||
|ontology_enrichment_celltype=CL:0000838!3.56e-29!12;CL:0000084!5.62e-27!11;CL:0000827!5.62e-27!11;CL:0000542!1.03e-26!13;CL:0000051!1.03e-26!13;CL:0000791!8.70e-23!9;CL:0000789!8.70e-23!9;CL:0002420!8.70e-23!9;CL:0002419!8.70e-23!9;CL:0000790!8.70e-23!9;CL:0000624!2.85e-20!8;CL:0002031!5.47e-20!25;CL:0000738!9.05e-20!17;CL:0002087!9.05e-20!17;CL:0000893!3.38e-15!6;CL:0002489!3.38e-15!6;CL:0000898!3.38e-15!6;CL:0000809!3.38e-15!6;CL:0000810!3.38e-15!6;CL:0000895!3.38e-15!6;CL:0000808!3.38e-15!6;CL:0000894!3.38e-15!6;CL:0000806!3.38e-15!6;CL:0000807!3.38e-15!6;CL:0000805!3.38e-15!6;CL:0002425!3.38e-15!6;CL:0002436!3.38e-15!6;CL:0002427!3.38e-15!6;CL:0002428!3.38e-15!6;CL:0002429!3.38e-15!6;CL:0002433!3.38e-15!6;CL:0002431!3.38e-15!6;CL:0002432!3.38e-15!6;CL:0000988!7.98e-15!32;CL:0002032!7.98e-15!32;CL:0000037!7.98e-15!32;CL:0000566!7.98e-15!32;CL:0000837!7.98e-15!32;CL:0002320!3.06e-09!46;CL:0000134!3.06e-09!46;CL:0000219!2.27e-07!54 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,2.18e-59,9;CL:0000789,2.18e-59,9;CL:0002420,2.18e-59,9;CL:0002419,2.18e-59,9;CL:0000790,2.18e-59,9;CL:0000624,3.83e-49,8;CL:0000084,1.18e-48,11;CL:0000827,1.18e-48,11;CL:0000838,1.26e-44,12;CL:0000542,3.24e-41,13;CL:0000051,3.24e-41,13;CL:0000738,1.40e-31,17;CL:0002087,1.40e-31,17;CL:0000893,3.35e-29,6;CL:0002489,3.35e-29,6;CL:0000898,3.35e-29,6;CL:0000809,3.35e-29,6;CL:0000810,3.35e-29,6;CL:0000895,3.35e-29,6;CL:0000808,3.35e-29,6;CL:0000894,3.35e-29,6;CL:0000806,3.35e-29,6;CL:0000807,3.35e-29,6;CL:0000805,3.35e-29,6;CL:0002425,3.35e-29,6;CL:0002436,3.35e-29,6;CL:0002427,3.35e-29,6;CL:0002428,3.35e-29,6;CL:0002429,3.35e-29,6;CL:0002433,3.35e-29,6;CL:0002431,3.35e-29,6;CL:0002432,3.35e-29,6;CL:0002031,1.57e-21,25;CL:0000988,7.62e-17,32;CL:0002032,7.62e-17,32;CL:0000037,7.62e-17,32;CL:0000837,7.62e-17,32;CL:0000815,1.20e-12,1;CL:0000792,1.20e-12,1;CL:0000625,2.01e-12,1;CL:0002320,1.00e-11,46;CL:0000134,1.00e-11,46;CL:0000219,5.55e-10,54 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002370!1.22e-38!23;UBERON:0000974!1.22e-38!23;UBERON:0004807!1.22e-38!23;UBERON:0005058!1.22e-38!23;UBERON:0003351!1.22e-38!23;UBERON:0009113!1.22e-38!23;UBERON:0003295!1.22e-38!23;UBERON:0009722!1.22e-38!23;UBERON:0005562!1.22e-38!23;UBERON:0007690!1.22e-38!23;UBERON:0006562!7.92e-37!24;UBERON:0003408!7.92e-37!24;UBERON:0001557!7.92e-37!24;UBERON:0001042!7.92e-37!24;UBERON:0008814!7.92e-37!24;UBERON:0009145!7.92e-37!24;UBERON:0004177!1.09e-32!29;UBERON:0000072!3.38e-32!27;UBERON:0002193!4.59e-31!48;UBERON:0000063!2.73e-26!35;UBERON:0002390!3.96e-26!45;UBERON:0003061!3.96e-26!45;UBERON:0000065!7.34e-22!41;UBERON:0001004!3.21e-21!42;UBERON:0002405!2.33e-19!70;UBERON:0005057!2.02e-16!51;UBERON:0003929!2.30e-13!55;UBERON:0002368!3.31e-13!60;UBERON:0003081!6.33e-13!88;UBERON:0002530!8.17e-12!65;UBERON:0005911!5.69e-11!69;UBERON:0000490!2.33e-10!66;UBERON:0000949!3.41e-10!72;UBERON:0000064!1.33e-09!99;UBERON:0002384!3.06e-09!46;UBERON:0001041!6.88e-08!92;UBERON:0000153!1.44e-07!94;UBERON:0000077!3.14e-07!97;UBERON:0002465!4.15e-07!3;UBERON:0007811!6.70e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,5.79e-12,23;UBERON:0000974,5.79e-12,23;UBERON:0004807,5.79e-12,23;UBERON:0005058,5.79e-12,23;UBERON:0003351,5.79e-12,23;UBERON:0009113,5.79e-12,23;UBERON:0003295,5.79e-12,23;UBERON:0009722,5.79e-12,23;UBERON:0005562,5.79e-12,23;UBERON:0007690,5.79e-12,23;UBERON:0002384,1.00e-11,46;UBERON:0006562,1.78e-11,24;UBERON:0003408,1.78e-11,24;UBERON:0001557,1.78e-11,24;UBERON:0001042,1.78e-11,24;UBERON:0008814,1.78e-11,24;UBERON:0009145,1.78e-11,24;UBERON:0000072,3.17e-10,27;UBERON:0004177,1.56e-09,29;UBERON:0005057,1.56e-09,29;UBERON:0000077,6.28e-08,35;UBERON:0007811,1.03e-07,36;UBERON:0000065,8.69e-07,41 | |||
|phase1_expression=0,0,0,0,0,0,0,38.091380415265,4.78681655315667,3.04283884218592,0.34243593645101,0.239316476986009,6.50562773738582,1.48614684112296,0,0,0,0.315462165358238,0.685572168028694,0.42438965179803,0,0.297872853602656,0.522399578277871,0.159992422793407,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.503347818173209,10.1550699881588,8.06625117941913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258937883647172,0,0.173485326766136,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255457055208591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205782136407943,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.554259570499814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188368457004691,0,0,0,0,0.138199973804424,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.632022241256357,0.405450430580328,0.718976700153791,0.909445760844565,1.07416017400489,0.79472541912506,0.360586348559907,0.295379054349154,0.605798699688886,0.304827226619999,0.100826185136841,0.487289403698762,0.192423683280659,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p3@Ctla4,p3@LOC100505288 | |||
}} |
Revision as of 20:40, 13 September 2013
Short description: | p3@Ctla4, p3@LOC100505288 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Ctla4_5end, CAGE_peak_3_at_LOC100505288_5end |
Coexpression cluster: | MCL_coexpression_mm9:29 |
Association with transcript: | -11bp_to_ENSMUST00000097720, ENSMUST00000144147_5end |
EntrezGene: | 100505288,12477 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
thymus | 5.79e-12 | 23 |
neck | 5.79e-12 | 23 |
respiratory system epithelium | 5.79e-12 | 23 |
hemolymphoid system gland | 5.79e-12 | 23 |
pharyngeal epithelium | 5.79e-12 | 23 |
thymic region | 5.79e-12 | 23 |
pharyngeal gland | 5.79e-12 | 23 |
entire pharyngeal arch endoderm | 5.79e-12 | 23 |
thymus primordium | 5.79e-12 | 23 |
early pharyngeal endoderm | 5.79e-12 | 23 |
connective tissue | 1.00e-11 | 46 |
pharynx | 1.78e-11 | 24 |
gland of gut | 1.78e-11 | 24 |
upper respiratory tract | 1.78e-11 | 24 |
chordate pharynx | 1.78e-11 | 24 |
pharyngeal arch system | 1.78e-11 | 24 |
pharyngeal region of foregut | 1.78e-11 | 24 |
segment of respiratory tract | 3.17e-10 | 27 |
hemopoietic organ | 1.56e-09 | 29 |
immune organ | 1.56e-09 | 29 |
mixed endoderm/mesoderm-derived structure | 6.28e-08 | 35 |
craniocervical region | 1.03e-07 | 36 |
respiratory tract | 8.69e-07 | 41 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.