FFCP PHASE1:Mm9::chr1:16041633..16041635,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=58|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr1:16041633..16041635,+|id=chr1:16041633..16041635,+|ontology_enrichment_celltype=CL:0000473!1.82e-16!3;CL:0000627!1.82e-16!3;CL:0000682!1.82e-16!3;CL:0000066!1.80e-15!25;CL:0000239!4.19e-14!6;CL:0000677!4.19e-14!6;CL:0000212!4.19e-14!6;CL:0000584!4.19e-14!6;CL:0000075!4.08e-12!7;CL:0002563!1.86e-09!9;CL:0002251!1.86e-09!9;CL:0000223!1.03e-08!20;CL:0002076!1.99e-08!15|ontology_enrichment_celltype_v019_2=CL:0000682,2.56e-25,3;CL:0000239,6.43e-22,6;CL:0000677,6.43e-22,6;CL:0000584,6.43e-22,6;CL:0000075,7.55e-19,7;CL:0000066,1.15e-15,25;CL:0002563,9.55e-15,9;CL:0002251,9.55e-15,9;CL:0000473,3.11e-11,7;CL:0002076,5.68e-09,15;CL:0000223,8.68e-07,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!5.29e-16!15;UBERON:0001962!6.92e-11!2;UBERON:0001961!6.92e-11!2;UBERON:0001744!6.92e-11!2;UBERON:0001242!7.97e-10!13;UBERON:0000060!7.97e-10!13;UBERON:0001262!7.97e-10!13;UBERON:0004786!7.97e-10!13;UBERON:0004923!9.81e-10!24;UBERON:0003350!1.86e-09!9;UBERON:0004808!1.86e-09!9;UBERON:0001277!1.86e-09!9;UBERON:0000485!9.31e-08!11;UBERON:0002465!1.53e-07!3|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.31e-25,15;UBERON:0001962,2.06e-16,2;UBERON:0001961,2.06e-16,2;UBERON:0001744,2.06e-16,2;UBERON:0004923,6.47e-16,24;UBERON:0001242,1.46e-15,13;UBERON:0001262,1.46e-15,13;UBERON:0004786,1.46e-15,13;UBERON:0003350,9.55e-15,9;UBERON:0004808,9.55e-15,9;UBERON:0001277,9.55e-15,9;UBERON:0000485,3.97e-12,11;UBERON:0002465,2.84e-11,3;UBERON:0000160,4.11e-09,31;UBERON:0003199,4.39e-09,1;UBERON:0001153,6.33e-09,1;UBERON:0001045,6.33e-09,1|phase1_expression=0,14.3079917132138,17.2899710968024,0,0,5.20425742926858,9.57811826441655,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,2.55987876469451,3.89995777814189,16.6527269593356,15.9381938578858,14.6520438226405,0,0,3.99114919179548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289864488701678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.505524445014783,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86391761218122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264450566663544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163934945376675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr1:16041633..16041635,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=58 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:16041633..16041635,+ | |||
|id=chr1:16041633..16041635,+ | |||
|ontology_enrichment_celltype=CL:0000473!1.82e-16!3;CL:0000627!1.82e-16!3;CL:0000682!1.82e-16!3;CL:0000066!1.80e-15!25;CL:0000239!4.19e-14!6;CL:0000677!4.19e-14!6;CL:0000212!4.19e-14!6;CL:0000584!4.19e-14!6;CL:0000075!4.08e-12!7;CL:0002563!1.86e-09!9;CL:0002251!1.86e-09!9;CL:0000223!1.03e-08!20;CL:0002076!1.99e-08!15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,2.56e-25,3;CL:0000239,6.43e-22,6;CL:0000677,6.43e-22,6;CL:0000584,6.43e-22,6;CL:0000075,7.55e-19,7;CL:0000066,1.15e-15,25;CL:0002563,9.55e-15,9;CL:0002251,9.55e-15,9;CL:0000473,3.11e-11,7;CL:0002076,5.68e-09,15;CL:0000223,8.68e-07,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!5.29e-16!15;UBERON:0001962!6.92e-11!2;UBERON:0001961!6.92e-11!2;UBERON:0001744!6.92e-11!2;UBERON:0001242!7.97e-10!13;UBERON:0000060!7.97e-10!13;UBERON:0001262!7.97e-10!13;UBERON:0004786!7.97e-10!13;UBERON:0004923!9.81e-10!24;UBERON:0003350!1.86e-09!9;UBERON:0004808!1.86e-09!9;UBERON:0001277!1.86e-09!9;UBERON:0000485!9.31e-08!11;UBERON:0002465!1.53e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.31e-25,15;UBERON:0001962,2.06e-16,2;UBERON:0001961,2.06e-16,2;UBERON:0001744,2.06e-16,2;UBERON:0004923,6.47e-16,24;UBERON:0001242,1.46e-15,13;UBERON:0001262,1.46e-15,13;UBERON:0004786,1.46e-15,13;UBERON:0003350,9.55e-15,9;UBERON:0004808,9.55e-15,9;UBERON:0001277,9.55e-15,9;UBERON:0000485,3.97e-12,11;UBERON:0002465,2.84e-11,3;UBERON:0000160,4.11e-09,31;UBERON:0003199,4.39e-09,1;UBERON:0001153,6.33e-09,1;UBERON:0001045,6.33e-09,1 | |||
|phase1_expression=0,14.3079917132138,17.2899710968024,0,0,5.20425742926858,9.57811826441655,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0850432901510698,0,0,2.55987876469451,3.89995777814189,16.6527269593356,15.9381938578858,14.6520438226405,0,0,3.99114919179548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289864488701678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.505524445014783,0.11418387971906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.86391761218122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264450566663544,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163934945376675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:16041633..16041635,+ | |||
}} |
Revision as of 19:22, 13 September 2013
Short description: | p@chr1:16041633..16041635, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:16041633..16041635, + |
Coexpression cluster: | MCL_coexpression_mm9:58 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 2.56e-25 | 3 |
brush border epithelial cell | 6.43e-22 | 6 |
gut absorptive cell | 6.43e-22 | 6 |
enterocyte | 6.43e-22 | 6 |
columnar/cuboidal epithelial cell | 7.55e-19 | 7 |
epithelial cell | 1.15e-15 | 25 |
intestinal epithelial cell | 9.55e-15 | 9 |
epithelial cell of alimentary canal | 9.55e-15 | 9 |
defensive cell | 3.11e-11 | 7 |
endo-epithelial cell | 5.68e-09 | 15 |
endodermal cell | 8.68e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
mucosa | 1.31e-25 | 15 |
gut-associated lymphoid tissue | 2.06e-16 | 2 |
mucosa-associated lymphoid tissue | 2.06e-16 | 2 |
lymphoid tissue | 2.06e-16 | 2 |
organ component layer | 6.47e-16 | 24 |
intestinal mucosa | 1.46e-15 | 13 |
wall of intestine | 1.46e-15 | 13 |
gastrointestinal system mucosa | 1.46e-15 | 13 |
epithelium of mucosa | 9.55e-15 | 9 |
gastrointestinal system epithelium | 9.55e-15 | 9 |
intestinal epithelium | 9.55e-15 | 9 |
simple columnar epithelium | 3.97e-12 | 11 |
lymphoid system | 2.84e-11 | 3 |
intestine | 4.11e-09 | 31 |
egg chamber | 4.39e-09 | 1 |
caecum | 6.33e-09 | 1 |
midgut | 6.33e-09 | 1 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.