FFCP PHASE1:Mm9::chr17:34324490..34324516,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=21354|HGNC=|MCL_coexpression_id=7|UniProt=P21958,Q3TBA3,Q3U6V4|association_with_transcript=0bp_to_ENSMUST00000170086,NM_001161730,NM_013683,uc008cbt.2,uc008cbu.2,uc012apt.1,uc012apu.1_5end|description=CAGE_peak_4_at_Tap1_5end|id=chr17:34324490..34324516,+|ontology_enrichment_celltype=CL:0002031!3.19e-08!25;CL:0000063!5.92e-08!66;CL:0000738!1.29e-07!17;CL:0002087!1.29e-07!17;CL:0000988!1.52e-07!32;CL:0002032!1.52e-07!32;CL:0000037!1.52e-07!32;CL:0000566!1.52e-07!32;CL:0000837!1.52e-07!32;CL:0000838!2.84e-07!12;CL:0000219!3.85e-07!54;CL:0002320!4.85e-07!46;CL:0000134!4.85e-07!46|ontology_enrichment_celltype_v019_2=CL:0000738,1.42e-09,17;CL:0002087,1.42e-09,17;CL:0002320,1.74e-09,46;CL:0000134,1.74e-09,46;CL:0000838,2.28e-09,12;CL:0002031,4.10e-09,25;CL:0000988,4.35e-09,32;CL:0002032,4.35e-09,32;CL:0000037,4.35e-09,32;CL:0000837,4.35e-09,32;CL:0000084,1.37e-08,11;CL:0000827,1.37e-08,11;CL:0000542,2.66e-08,13;CL:0000051,2.66e-08,13;CL:0000219,2.67e-08,54;CL:0000624,6.32e-07,8;CL:0000791,8.35e-07,9;CL:0000789,8.35e-07,9;CL:0002420,8.35e-07,9;CL:0002419,8.35e-07,9;CL:0000790,8.35e-07,9;CL:0000034,8.68e-07,97|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!1.73e-15!48;UBERON:0002390!2.52e-14!45;UBERON:0003061!2.52e-14!45;UBERON:0004177!3.92e-14!29;UBERON:0003408!6.14e-13!24;UBERON:0002370!1.20e-12!23;UBERON:0000974!1.20e-12!23;UBERON:0004807!1.20e-12!23;UBERON:0005058!1.20e-12!23;UBERON:0003351!1.20e-12!23;UBERON:0009113!1.20e-12!23;UBERON:0003295!1.20e-12!23;UBERON:0009722!1.20e-12!23;UBERON:0005562!1.20e-12!23;UBERON:0007690!1.20e-12!23;UBERON:0006562!9.57e-12!24;UBERON:0001557!9.57e-12!24;UBERON:0001042!9.57e-12!24;UBERON:0008814!9.57e-12!24;UBERON:0009145!9.57e-12!24;UBERON:0000072!3.20e-10!27;UBERON:0001004!4.78e-09!42;UBERON:0000065!9.66e-09!41;UBERON:0002405!1.45e-08!70;UBERON:0000063!3.75e-07!35;UBERON:0003081!4.42e-07!88;UBERON:0002384!4.85e-07!46|ontology_enrichment_uberon_v019_2=UBERON:0002193,3.23e-21,48;UBERON:0002405,3.23e-21,48;UBERON:0002390,1.29e-19,45;UBERON:0003061,1.29e-19,45;UBERON:0004177,2.04e-19,29;UBERON:0005057,2.04e-19,29;UBERON:0000077,8.43e-19,35;UBERON:0003408,8.25e-18,24;UBERON:0002370,2.04e-17,23;UBERON:0000974,2.04e-17,23;UBERON:0004807,2.04e-17,23;UBERON:0005058,2.04e-17,23;UBERON:0003351,2.04e-17,23;UBERON:0009113,2.04e-17,23;UBERON:0003295,2.04e-17,23;UBERON:0009722,2.04e-17,23;UBERON:0005562,2.04e-17,23;UBERON:0007690,2.04e-17,23;UBERON:0006562,2.84e-16,24;UBERON:0001557,2.84e-16,24;UBERON:0001042,2.84e-16,24;UBERON:0008814,2.84e-16,24;UBERON:0009145,2.84e-16,24;UBERON:0000072,2.91e-14,27;UBERON:0001004,1.22e-10,42;UBERON:0000065,3.10e-10,41;UBERON:0007811,3.94e-10,36;UBERON:0000490,1.08e-09,66;UBERON:0002384,1.74e-09,46;UBERON:0003081,5.05e-08,87;UBERON:0003929,8.78e-08,55;UBERON:0000153,1.29e-07,43;UBERON:0000926,3.32e-07,120;UBERON:0004120,3.32e-07,120;UBERON:0006603,3.32e-07,120|phase1_expression=1.12104192973356,1.04692622291808,1.81999695755814,1.81478526784098,0,1.00727563147134,0.934450562382103,5.16493293766305,10.2775767170717,20.5976783163354,2.05461561870606,2.47293692885543,4.79362043807376,5.94458736449182,0.999329285446988,1.82227740650843,0.699561878128147,6.62470547252299,4.2505474417779,4.2438965179803,1.27564935226605,7.14894848646374,9.92559198727954,1.75991665072747,1.83527424853736,1.72269589234506,2.15380998079537,1.72376986148711,1.33016393619462,2.01624103807945,1.77384408524244,0.635030673459631,0.61506478758457,0,1.44425809875637,0.332469290716985,0.816677425049476,4.18531630736908,2.3440060335714,1.57057123192139,3.52938892818609,2.73218193983378,2.91306211818692,2.51793635951155,2.12891555560981,2.20256102594018,0.782391344348039,0.872100625521786,2.19686182734472,0.777719596297134,1.1198913730029,0,5.03347818173209,1.45072428402269,1.00828139742739,0,0.573066879877513,0.515672092277442,0,0,0,4.06613438482959,5.33576877666684,0.449949858640699,0,2.8419204597844,1.79760066311043,3.07374644257244,0,0.135005938331691,0,0,0.662605622854841,0,0.191690942036473,0,0,0,0,0.131886287730194,0.182975287204819,0,0,0,0.30559649555362,0.883885756421003,0.569486723196412,0.186399445825301,1.13589289999776,0.906858721281426,2.31891590961342,0,1.3599426674155,0,0.649776417447669,0,0.561777680527007,1.87473354835864,1.03914401841148,1.41335829804136,1.40843419776681,1.28326477414318,7.64415719119937,0,0.216491041011214,0.253359865475099,1.01104889002957,1.25602267690966,3.88406825470758,2.22663208597237,0.346970653532272,0.304465478312141,0.922461989024234,0.60289056221049,0.940709657085638,1.50799909595611,0.741584903203122,1.73519228303894,0.884610551949874,0,0.883366073841574,0.484875253135222,0,0,0.209446706813455,2.55457055208591,2.03685711660064,1.79970819298022,1.77898317902291,0.299581278809645,0,1.63350657746724,0,0.255715457330331,0.20778804455956,0.324482526135515,0.712875546952214,0.995255764880744,0.505445516867349,0.631325567659422,0.130120442962704,0,0.360124259610698,0.301409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| ||
|EntrezGene=21354 | |||
|HGNC= | |||
|MCL_coexpression_id=7 | |||
|UniProt=P21958,Q3TBA3,Q3U6V4 | |||
|association_with_transcript=0bp_to_ENSMUST00000170086,NM_001161730,NM_013683,uc008cbt.2,uc008cbu.2,uc012apt.1,uc012apu.1_5end | |||
|description=CAGE_peak_4_at_Tap1_5end | |||
|id=chr17:34324490..34324516,+ | |||
|ontology_enrichment_celltype=CL:0002031!3.19e-08!25;CL:0000063!5.92e-08!66;CL:0000738!1.29e-07!17;CL:0002087!1.29e-07!17;CL:0000988!1.52e-07!32;CL:0002032!1.52e-07!32;CL:0000037!1.52e-07!32;CL:0000566!1.52e-07!32;CL:0000837!1.52e-07!32;CL:0000838!2.84e-07!12;CL:0000219!3.85e-07!54;CL:0002320!4.85e-07!46;CL:0000134!4.85e-07!46 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.42e-09,17;CL:0002087,1.42e-09,17;CL:0002320,1.74e-09,46;CL:0000134,1.74e-09,46;CL:0000838,2.28e-09,12;CL:0002031,4.10e-09,25;CL:0000988,4.35e-09,32;CL:0002032,4.35e-09,32;CL:0000037,4.35e-09,32;CL:0000837,4.35e-09,32;CL:0000084,1.37e-08,11;CL:0000827,1.37e-08,11;CL:0000542,2.66e-08,13;CL:0000051,2.66e-08,13;CL:0000219,2.67e-08,54;CL:0000624,6.32e-07,8;CL:0000791,8.35e-07,9;CL:0000789,8.35e-07,9;CL:0002420,8.35e-07,9;CL:0002419,8.35e-07,9;CL:0000790,8.35e-07,9;CL:0000034,8.68e-07,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.73e-15!48;UBERON:0002390!2.52e-14!45;UBERON:0003061!2.52e-14!45;UBERON:0004177!3.92e-14!29;UBERON:0003408!6.14e-13!24;UBERON:0002370!1.20e-12!23;UBERON:0000974!1.20e-12!23;UBERON:0004807!1.20e-12!23;UBERON:0005058!1.20e-12!23;UBERON:0003351!1.20e-12!23;UBERON:0009113!1.20e-12!23;UBERON:0003295!1.20e-12!23;UBERON:0009722!1.20e-12!23;UBERON:0005562!1.20e-12!23;UBERON:0007690!1.20e-12!23;UBERON:0006562!9.57e-12!24;UBERON:0001557!9.57e-12!24;UBERON:0001042!9.57e-12!24;UBERON:0008814!9.57e-12!24;UBERON:0009145!9.57e-12!24;UBERON:0000072!3.20e-10!27;UBERON:0001004!4.78e-09!42;UBERON:0000065!9.66e-09!41;UBERON:0002405!1.45e-08!70;UBERON:0000063!3.75e-07!35;UBERON:0003081!4.42e-07!88;UBERON:0002384!4.85e-07!46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,3.23e-21,48;UBERON:0002405,3.23e-21,48;UBERON:0002390,1.29e-19,45;UBERON:0003061,1.29e-19,45;UBERON:0004177,2.04e-19,29;UBERON:0005057,2.04e-19,29;UBERON:0000077,8.43e-19,35;UBERON:0003408,8.25e-18,24;UBERON:0002370,2.04e-17,23;UBERON:0000974,2.04e-17,23;UBERON:0004807,2.04e-17,23;UBERON:0005058,2.04e-17,23;UBERON:0003351,2.04e-17,23;UBERON:0009113,2.04e-17,23;UBERON:0003295,2.04e-17,23;UBERON:0009722,2.04e-17,23;UBERON:0005562,2.04e-17,23;UBERON:0007690,2.04e-17,23;UBERON:0006562,2.84e-16,24;UBERON:0001557,2.84e-16,24;UBERON:0001042,2.84e-16,24;UBERON:0008814,2.84e-16,24;UBERON:0009145,2.84e-16,24;UBERON:0000072,2.91e-14,27;UBERON:0001004,1.22e-10,42;UBERON:0000065,3.10e-10,41;UBERON:0007811,3.94e-10,36;UBERON:0000490,1.08e-09,66;UBERON:0002384,1.74e-09,46;UBERON:0003081,5.05e-08,87;UBERON:0003929,8.78e-08,55;UBERON:0000153,1.29e-07,43;UBERON:0000926,3.32e-07,120;UBERON:0004120,3.32e-07,120;UBERON:0006603,3.32e-07,120 | |||
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| |||
|short_description=p4@Tap1 | |||
}} |
Revision as of 14:11, 13 September 2013
Short description: | p4@Tap1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Tap1_5end |
Coexpression cluster: | MCL_coexpression_mm9:7 |
Association with transcript: | 0bp_to_ENSMUST00000170086, NM_001161730, NM_013683, uc008cbt.2, uc008cbu.2, uc012apt.1, uc012apu.1_5end |
EntrezGene: | Tap1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 1.42e-09 | 17 |
nongranular leukocyte | 1.42e-09 | 17 |
connective tissue cell | 1.74e-09 | 46 |
mesenchymal cell | 1.74e-09 | 46 |
lymphoid lineage restricted progenitor cell | 2.28e-09 | 12 |
hematopoietic lineage restricted progenitor cell | 4.10e-09 | 25 |
hematopoietic cell | 4.35e-09 | 32 |
hematopoietic oligopotent progenitor cell | 4.35e-09 | 32 |
hematopoietic stem cell | 4.35e-09 | 32 |
hematopoietic multipotent progenitor cell | 4.35e-09 | 32 |
T cell | 1.37e-08 | 11 |
pro-T cell | 1.37e-08 | 11 |
lymphocyte | 2.66e-08 | 13 |
common lymphoid progenitor | 2.66e-08 | 13 |
motile cell | 2.67e-08 | 54 |
CD4-positive, alpha-beta T cell | 6.32e-07 | 8 |
mature alpha-beta T cell | 8.35e-07 | 9 |
alpha-beta T cell | 8.35e-07 | 9 |
immature T cell | 8.35e-07 | 9 |
mature T cell | 8.35e-07 | 9 |
immature alpha-beta T cell | 8.35e-07 | 9 |
stem cell | 8.68e-07 | 97 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.