FFCP PHASE1:Mm9::chr17:27693450..27693456,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=155|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr17:27693450..27693456,-|id=chr17:27693450..27693456,-|ontology_enrichment_celltype=CL:0000063!1.66e-17!66;CL:0000988!1.12e-12!32;CL:0002032!1.12e-12!32;CL:0000037!1.12e-12!32;CL:0000566!1.12e-12!32;CL:0000837!1.12e-12!32;CL:0002320!3.38e-12!46;CL:0000134!3.38e-12!46;CL:0000219!1.70e-10!54;CL:0000144!1.46e-09!121;CL:0000012!1.46e-09!121;CL:0002031!5.75e-09!25;CL:0002371!2.34e-08!118;CL:0000548!1.76e-07!115;CL:0000004!1.76e-07!115;CL:0000255!1.76e-07!115;CL:0000066!2.05e-07!25;CL:0000049!2.29e-07!19;CL:0000738!7.28e-07!17;CL:0002087!7.28e-07!17|ontology_enrichment_celltype_v019_2=CL:0000988,5.54e-14,32;CL:0002032,5.54e-14,32;CL:0000037,5.54e-14,32;CL:0000837,5.54e-14,32;CL:0002320,3.34e-13,46;CL:0000134,3.34e-13,46;CL:0000219,5.89e-11,54;CL:0000066,1.23e-09,25;CL:0002031,1.45e-09,25;CL:0000034,6.67e-09,97;CL:0000223,1.37e-08,20;CL:0000542,1.15e-07,13;CL:0000051,1.15e-07,13;CL:0000049,1.28e-07,19;CL:0000738,1.30e-07,17;CL:0002087,1.30e-07,17;CL:0002563,2.23e-07,9;CL:0002251,2.23e-07,9;CL:0000838,2.30e-07,12;CL:0000723,6.82e-07,91;CL:0000048,6.82e-07,91|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002384!3.38e-12!46;UBERON:0002390!8.14e-09!45;UBERON:0003061!8.14e-09!45;UBERON:0002193!1.48e-08!48;UBERON:0003929!5.80e-08!55;UBERON:0002405!6.41e-08!70;UBERON:0000490!9.26e-08!66|ontology_enrichment_uberon_v019_2=UBERON:0002384,3.34e-13,46;UBERON:0003929,1.14e-10,55;UBERON:0000490,1.48e-10,66;UBERON:0002390,1.81e-09,45;UBERON:0003061,1.81e-09,45;UBERON:0000072,6.00e-09,27;UBERON:0002193,1.10e-08,48;UBERON:0002405,1.10e-08,48;UBERON:0004177,8.68e-08,29;UBERON:0005057,8.68e-08,29;UBERON:0002370,1.17e-07,23;UBERON:0000974,1.17e-07,23;UBERON:0004807,1.17e-07,23;UBERON:0005058,1.17e-07,23;UBERON:0003351,1.17e-07,23;UBERON:0009113,1.17e-07,23;UBERON:0003295,1.17e-07,23;UBERON:0009722,1.17e-07,23;UBERON:0005562,1.17e-07,23;UBERON:0007690,1.17e-07,23;UBERON:0005911,1.94e-07,69;UBERON:0003350,2.23e-07,9;UBERON:0004808,2.23e-07,9;UBERON:0001277,2.23e-07,9;UBERON:0007811,4.12e-07,36;UBERON:0006562,4.92e-07,24;UBERON:0003408,4.92e-07,24;UBERON:0001557,4.92e-07,24;UBERON:0001042,4.92e-07,24;UBERON:0008814,4.92e-07,24;UBERON:0009145,4.92e-07,24;UBERON:0000153,7.94e-07,43|phase1_expression=0.640595388419176,9.07336059862339,9.09998478779072,8.46899791659124,9.01612313903425,8.72972213941827,10.7461814673942,3.74457637980571,43.6445038670167,49.8557441065846,11.1291679346578,9.4131147614497,1.02720437958723,1.74840804837995,0.999329285446988,1.41732687172878,2.09868563438444,1.57731082679119,1.91960207048034,3.39511721438424,0.850432901510698,6.35462087685666,7.83599367416806,0.95995453676044,1.60586496747019,11.4846392823004,7.75371593086335,8.18790684206378,0.950117097281869,1.00812051903972,4.6563407237614,44.4521471421742,40.5942759805816,15.8481681015439,8.66554859253824,6.31691652362271,16.1293791447272,6.27797446105362,7.0320181007142,2.61761871986899,14.1175557127443,8.19654581950135,3.39857247121808,1.25896817975577,1.21652317463417,1.65192076945513,0.782391344348039,0.218025156380447,0.439372365468944,0.388859798148567,0.699932108126813,0,9.56360854529097,4.35217285206807,4.7053131879945,0,0.573066879877513,0,0.202316460859598,0,0.633831403506179,6.43804610931351,1.77858959222228,0.899899717281399,0.988866362566974,1.4209602298922,1.19840044207362,0.768436610643109,0.725827286159344,0.270011876663381,0.210324961351382,0.285650984403804,0,0.979926393719632,1.15014565221884,0,1.10115880999389,0.127687338085188,0,0.131886287730194,0,0,0.279182999001381,0.56276261003168,0.30559649555362,0.294628585473668,0.142371680799103,0.186399445825301,7.64834552665159,6.72586884950391,23.1891590961342,0,33.9985666853875,2.15881276655127,1.29955283489534,3.13618820968135,0.280888840263504,0.170430322578058,0.259786004602869,1.06001872353102,1.26759077799012,0,0,0,10.1750789275271,12.6679932737549,18.704404465547,0.68510327831436,0.517875767294343,0.29688427812965,0.693941307064543,3.65358573974569,2.99800146432876,0.904335843315735,0.352766121407114,0.376999773989026,0,0.144599356919912,0.884610551949874,0,2.20841518460394,1.45462575940567,0,0.292780797011547,0.209446706813455,0.766371165625774,12.1013275750979,13.7977628128484,6.4805815807263,0,0,0,0,0,0,0,0.305518091550949,1.49288364732112,0,0.841767423545896,3.6433724029557,6.20735681970377,3.06105620669094,2.10986744970001,1.29269348387523,3.33095672740609,3.37326208415024,0.776110112217047,3.23351989399263,0.945530400839096,2.28736461413134,0.657587197282725,1.11218899690239,1.0447564995665,1.02891068203972,1.19420560091096,14.7464769335779,10.808612098818,10.7982129770325,0,0.703578179943289,2.16074473753218,0.710234206755631,0.983821158737019,1.07986979021165,0.930135779001631,0,0.583826711835847,0,0,0,0.292399974850665,0.439100230582101,0,0,0,0,0.793351699990633,3.19932375802851,3.25131340604614,1.0309396905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| ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=155 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr17:27693450..27693456,- | |||
|id=chr17:27693450..27693456,- | |||
|ontology_enrichment_celltype=CL:0000063!1.66e-17!66;CL:0000988!1.12e-12!32;CL:0002032!1.12e-12!32;CL:0000037!1.12e-12!32;CL:0000566!1.12e-12!32;CL:0000837!1.12e-12!32;CL:0002320!3.38e-12!46;CL:0000134!3.38e-12!46;CL:0000219!1.70e-10!54;CL:0000144!1.46e-09!121;CL:0000012!1.46e-09!121;CL:0002031!5.75e-09!25;CL:0002371!2.34e-08!118;CL:0000548!1.76e-07!115;CL:0000004!1.76e-07!115;CL:0000255!1.76e-07!115;CL:0000066!2.05e-07!25;CL:0000049!2.29e-07!19;CL:0000738!7.28e-07!17;CL:0002087!7.28e-07!17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,5.54e-14,32;CL:0002032,5.54e-14,32;CL:0000037,5.54e-14,32;CL:0000837,5.54e-14,32;CL:0002320,3.34e-13,46;CL:0000134,3.34e-13,46;CL:0000219,5.89e-11,54;CL:0000066,1.23e-09,25;CL:0002031,1.45e-09,25;CL:0000034,6.67e-09,97;CL:0000223,1.37e-08,20;CL:0000542,1.15e-07,13;CL:0000051,1.15e-07,13;CL:0000049,1.28e-07,19;CL:0000738,1.30e-07,17;CL:0002087,1.30e-07,17;CL:0002563,2.23e-07,9;CL:0002251,2.23e-07,9;CL:0000838,2.30e-07,12;CL:0000723,6.82e-07,91;CL:0000048,6.82e-07,91 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!3.38e-12!46;UBERON:0002390!8.14e-09!45;UBERON:0003061!8.14e-09!45;UBERON:0002193!1.48e-08!48;UBERON:0003929!5.80e-08!55;UBERON:0002405!6.41e-08!70;UBERON:0000490!9.26e-08!66 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,3.34e-13,46;UBERON:0003929,1.14e-10,55;UBERON:0000490,1.48e-10,66;UBERON:0002390,1.81e-09,45;UBERON:0003061,1.81e-09,45;UBERON:0000072,6.00e-09,27;UBERON:0002193,1.10e-08,48;UBERON:0002405,1.10e-08,48;UBERON:0004177,8.68e-08,29;UBERON:0005057,8.68e-08,29;UBERON:0002370,1.17e-07,23;UBERON:0000974,1.17e-07,23;UBERON:0004807,1.17e-07,23;UBERON:0005058,1.17e-07,23;UBERON:0003351,1.17e-07,23;UBERON:0009113,1.17e-07,23;UBERON:0003295,1.17e-07,23;UBERON:0009722,1.17e-07,23;UBERON:0005562,1.17e-07,23;UBERON:0007690,1.17e-07,23;UBERON:0005911,1.94e-07,69;UBERON:0003350,2.23e-07,9;UBERON:0004808,2.23e-07,9;UBERON:0001277,2.23e-07,9;UBERON:0007811,4.12e-07,36;UBERON:0006562,4.92e-07,24;UBERON:0003408,4.92e-07,24;UBERON:0001557,4.92e-07,24;UBERON:0001042,4.92e-07,24;UBERON:0008814,4.92e-07,24;UBERON:0009145,4.92e-07,24;UBERON:0000153,7.94e-07,43 | |||
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| |||
|short_description=p@chr17:27693450..27693456,- | |||
}} |
Revision as of 13:53, 13 September 2013
Short description: | p@chr17:27693450..27693456, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr17:27693450..27693456, - |
Coexpression cluster: | MCL_coexpression_mm9:155 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 5.54e-14 | 32 |
hematopoietic oligopotent progenitor cell | 5.54e-14 | 32 |
hematopoietic stem cell | 5.54e-14 | 32 |
hematopoietic multipotent progenitor cell | 5.54e-14 | 32 |
connective tissue cell | 3.34e-13 | 46 |
mesenchymal cell | 3.34e-13 | 46 |
motile cell | 5.89e-11 | 54 |
epithelial cell | 1.23e-09 | 25 |
hematopoietic lineage restricted progenitor cell | 1.45e-09 | 25 |
stem cell | 6.67e-09 | 97 |
endodermal cell | 1.37e-08 | 20 |
lymphocyte | 1.15e-07 | 13 |
common lymphoid progenitor | 1.15e-07 | 13 |
common myeloid progenitor | 1.28e-07 | 19 |
leukocyte | 1.30e-07 | 17 |
nongranular leukocyte | 1.30e-07 | 17 |
intestinal epithelial cell | 2.23e-07 | 9 |
epithelial cell of alimentary canal | 2.23e-07 | 9 |
lymphoid lineage restricted progenitor cell | 2.30e-07 | 12 |
somatic stem cell | 6.82e-07 | 91 |
multi fate stem cell | 6.82e-07 | 91 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 3.34e-13 | 46 |
gut epithelium | 1.14e-10 | 55 |
unilaminar epithelium | 1.48e-10 | 66 |
hematopoietic system | 1.81e-09 | 45 |
blood island | 1.81e-09 | 45 |
segment of respiratory tract | 6.00e-09 | 27 |
hemolymphoid system | 1.10e-08 | 48 |
immune system | 1.10e-08 | 48 |
hemopoietic organ | 8.68e-08 | 29 |
immune organ | 8.68e-08 | 29 |
thymus | 1.17e-07 | 23 |
neck | 1.17e-07 | 23 |
respiratory system epithelium | 1.17e-07 | 23 |
hemolymphoid system gland | 1.17e-07 | 23 |
pharyngeal epithelium | 1.17e-07 | 23 |
thymic region | 1.17e-07 | 23 |
pharyngeal gland | 1.17e-07 | 23 |
entire pharyngeal arch endoderm | 1.17e-07 | 23 |
thymus primordium | 1.17e-07 | 23 |
early pharyngeal endoderm | 1.17e-07 | 23 |
endo-epithelium | 1.94e-07 | 69 |
epithelium of mucosa | 2.23e-07 | 9 |
gastrointestinal system epithelium | 2.23e-07 | 9 |
intestinal epithelium | 2.23e-07 | 9 |
craniocervical region | 4.12e-07 | 36 |
pharynx | 4.92e-07 | 24 |
gland of gut | 4.92e-07 | 24 |
upper respiratory tract | 4.92e-07 | 24 |
chordate pharynx | 4.92e-07 | 24 |
pharyngeal arch system | 4.92e-07 | 24 |
pharyngeal region of foregut | 4.92e-07 | 24 |
anterior region of body | 7.94e-07 | 43 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.