FFCP PHASE1:Mm9::chr16:33819263..33819275,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=12|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr16:33819263..33819275,+|id=chr16:33819263..33819275,+|ontology_enrichment_celltype=CL:0002563!2.19e-12!9;CL:0002251!2.19e-12!9;CL:0000239!2.58e-11!6;CL:0000677!2.58e-11!6;CL:0000212!2.58e-11!6;CL:0000584!2.58e-11!6;CL:0000075!1.43e-09!7;CL:0000066!3.28e-07!25;CL:0000473!3.67e-07!3;CL:0000627!3.67e-07!3;CL:0000682!3.67e-07!3;CL:0002076!8.11e-07!15|ontology_enrichment_celltype_v019_2=CL:0000239,1.43e-13,6;CL:0000677,1.43e-13,6;CL:0000584,1.43e-13,6;CL:0000075,1.33e-11,7;CL:0000682,2.16e-11,3;CL:0002563,5.70e-09,9;CL:0002251,5.70e-09,9;CL:0000066,1.52e-07,25|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!2.13e-26!43;UBERON:0000344!1.16e-23!15;UBERON:0001242!7.92e-20!13;UBERON:0000060!7.92e-20!13;UBERON:0001262!7.92e-20!13;UBERON:0004786!7.92e-20!13;UBERON:0005409!7.63e-19!59;UBERON:0004923!2.23e-15!24;UBERON:0003350!2.19e-12!9;UBERON:0004808!2.19e-12!9;UBERON:0001277!2.19e-12!9;UBERON:0000485!7.55e-10!11;UBERON:0000331!3.50e-07!3;UBERON:0002116!3.50e-07!3;UBERON:0001204!3.50e-07!3;UBERON:0001168!3.50e-07!3|ontology_enrichment_uberon_v019_2=UBERON:0000160,4.50e-39,31;UBERON:0005409,3.72e-27,47;UBERON:0000344,3.61e-26,15;UBERON:0001242,4.63e-20,13;UBERON:0001262,4.63e-20,13;UBERON:0004786,4.63e-20,13;UBERON:0004923,1.40e-15,24;UBERON:0002108,1.96e-14,4;UBERON:0000331,1.99e-11,3;UBERON:0002116,1.99e-11,3;UBERON:0001204,1.99e-11,3;UBERON:0001168,1.99e-11,3;UBERON:0001007,4.82e-11,116;UBERON:0001555,4.82e-11,116;UBERON:0007026,4.82e-11,116;UBERON:0004119,8.80e-11,118;UBERON:0000925,8.80e-11,118;UBERON:0006595,8.80e-11,118;UBERON:0003350,5.70e-09,9;UBERON:0004808,5.70e-09,9;UBERON:0001277,5.70e-09,9;UBERON:0004921,8.09e-09,114;UBERON:0001962,2.59e-08,2;UBERON:0001961,2.59e-08,2;UBERON:0001744,2.59e-08,2;UBERON:0000485,2.71e-07,11|phase1_expression=0,0.348975407639361,2.72999543633722,2.11724947914781,2.50447864973174,1.17515490338323,1.63528848416868,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.43974237497583,3.67054849707472,4.01962374880514,3.01533397311352,3.66301095566011,6.84084310042946,3.52842181663903,2.88249663851896,0,0,0,0,0.664938581433969,0.408338712524738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,1.48439043634778,0.258937883647172,0,0,0,0,0,0,0,0.494389935468748,0,0,0,0,0,0,0,0,1.78819938646014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.93879444265976,4.23120906661671,0,0,0.128867461322093,0.605050573870028,0.889512175379481,1.71203063501303,1.89811624617805,1.15289268306808,1.25667604400135,1.1937388322469,1.75467678407208,0,1.94524244887225,1.1948476395262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04036585640896,0,0,0,0,0,0,0,0,0.139951452323658,0,0,0,0,0,0,0,0,0,0,1.29614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412070114477788,0,0,0.25347929989024,0,0,0,0.0574354689556133,0,0,0,0,0,0.342869252385415,0,0.238436189947321,0,0.188218760830661,0,0.182927972872773,0,0.135804113845862,0,0.118635018124174,0.0985044823755635,0,0,0.192906610981141,0,0.467863216890817,0.214871054048298,0,0,0|short_description=p@chr16:33819263..33819275,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr16:33819263..33819275,+ | |||
|id=chr16:33819263..33819275,+ | |||
|ontology_enrichment_celltype=CL:0002563!2.19e-12!9;CL:0002251!2.19e-12!9;CL:0000239!2.58e-11!6;CL:0000677!2.58e-11!6;CL:0000212!2.58e-11!6;CL:0000584!2.58e-11!6;CL:0000075!1.43e-09!7;CL:0000066!3.28e-07!25;CL:0000473!3.67e-07!3;CL:0000627!3.67e-07!3;CL:0000682!3.67e-07!3;CL:0002076!8.11e-07!15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,1.43e-13,6;CL:0000677,1.43e-13,6;CL:0000584,1.43e-13,6;CL:0000075,1.33e-11,7;CL:0000682,2.16e-11,3;CL:0002563,5.70e-09,9;CL:0002251,5.70e-09,9;CL:0000066,1.52e-07,25 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!2.13e-26!43;UBERON:0000344!1.16e-23!15;UBERON:0001242!7.92e-20!13;UBERON:0000060!7.92e-20!13;UBERON:0001262!7.92e-20!13;UBERON:0004786!7.92e-20!13;UBERON:0005409!7.63e-19!59;UBERON:0004923!2.23e-15!24;UBERON:0003350!2.19e-12!9;UBERON:0004808!2.19e-12!9;UBERON:0001277!2.19e-12!9;UBERON:0000485!7.55e-10!11;UBERON:0000331!3.50e-07!3;UBERON:0002116!3.50e-07!3;UBERON:0001204!3.50e-07!3;UBERON:0001168!3.50e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,4.50e-39,31;UBERON:0005409,3.72e-27,47;UBERON:0000344,3.61e-26,15;UBERON:0001242,4.63e-20,13;UBERON:0001262,4.63e-20,13;UBERON:0004786,4.63e-20,13;UBERON:0004923,1.40e-15,24;UBERON:0002108,1.96e-14,4;UBERON:0000331,1.99e-11,3;UBERON:0002116,1.99e-11,3;UBERON:0001204,1.99e-11,3;UBERON:0001168,1.99e-11,3;UBERON:0001007,4.82e-11,116;UBERON:0001555,4.82e-11,116;UBERON:0007026,4.82e-11,116;UBERON:0004119,8.80e-11,118;UBERON:0000925,8.80e-11,118;UBERON:0006595,8.80e-11,118;UBERON:0003350,5.70e-09,9;UBERON:0004808,5.70e-09,9;UBERON:0001277,5.70e-09,9;UBERON:0004921,8.09e-09,114;UBERON:0001962,2.59e-08,2;UBERON:0001961,2.59e-08,2;UBERON:0001744,2.59e-08,2;UBERON:0000485,2.71e-07,11 | |||
|phase1_expression=0,0.348975407639361,2.72999543633722,2.11724947914781,2.50447864973174,1.17515490338323,1.63528848416868,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.43974237497583,3.67054849707472,4.01962374880514,3.01533397311352,3.66301095566011,6.84084310042946,3.52842181663903,2.88249663851896,0,0,0,0,0.664938581433969,0.408338712524738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,1.48439043634778,0.258937883647172,0,0,0,0,0,0,0,0.494389935468748,0,0,0,0,0,0,0,0,1.78819938646014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.93879444265976,4.23120906661671,0,0,0.128867461322093,0.605050573870028,0.889512175379481,1.71203063501303,1.89811624617805,1.15289268306808,1.25667604400135,1.1937388322469,1.75467678407208,0,1.94524244887225,1.1948476395262,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.04036585640896,0,0,0,0,0,0,0,0,0.139951452323658,0,0,0,0,0,0,0,0,0,0,1.29614973291793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.412070114477788,0,0,0.25347929989024,0,0,0,0.0574354689556133,0,0,0,0,0,0.342869252385415,0,0.238436189947321,0,0.188218760830661,0,0.182927972872773,0,0.135804113845862,0,0.118635018124174,0.0985044823755635,0,0,0.192906610981141,0,0.467863216890817,0.214871054048298,0,0,0 | |||
|short_description=p@chr16:33819263..33819275,+ | |||
}} |
Revision as of 12:29, 13 September 2013
Short description: | p@chr16:33819263..33819275, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr16:33819263..33819275, + |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 1.43e-13 | 6 |
gut absorptive cell | 1.43e-13 | 6 |
enterocyte | 1.43e-13 | 6 |
columnar/cuboidal epithelial cell | 1.33e-11 | 7 |
M cell of gut | 2.16e-11 | 3 |
intestinal epithelial cell | 5.70e-09 | 9 |
epithelial cell of alimentary canal | 5.70e-09 | 9 |
epithelial cell | 1.52e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
intestine | 4.50e-39 | 31 |
gastrointestinal system | 3.72e-27 | 47 |
mucosa | 3.61e-26 | 15 |
intestinal mucosa | 4.63e-20 | 13 |
wall of intestine | 4.63e-20 | 13 |
gastrointestinal system mucosa | 4.63e-20 | 13 |
organ component layer | 1.40e-15 | 24 |
small intestine | 1.96e-14 | 4 |
ileal mucosa | 1.99e-11 | 3 |
ileum | 1.99e-11 | 3 |
mucosa of small intestine | 1.99e-11 | 3 |
wall of small intestine | 1.99e-11 | 3 |
digestive system | 4.82e-11 | 116 |
digestive tract | 4.82e-11 | 116 |
primitive gut | 4.82e-11 | 116 |
endoderm-derived structure | 8.80e-11 | 118 |
endoderm | 8.80e-11 | 118 |
presumptive endoderm | 8.80e-11 | 118 |
epithelium of mucosa | 5.70e-09 | 9 |
gastrointestinal system epithelium | 5.70e-09 | 9 |
intestinal epithelium | 5.70e-09 | 9 |
subdivision of digestive tract | 8.09e-09 | 114 |
gut-associated lymphoid tissue | 2.59e-08 | 2 |
mucosa-associated lymphoid tissue | 2.59e-08 | 2 |
lymphoid tissue | 2.59e-08 | 2 |
simple columnar epithelium | 2.71e-07 | 11 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.