FFCP PHASE1:Hg19::chr4:34480309..34480321,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C158|description=CAGE_peak_at_chr4:34480309..34480321,-|id=chr4:34480309..34480321,-|ontology_enrichment_celltype=CL:0002592!2.59e-14!3;CL:0000864!2.68e-11!1;CL:0000091!2.68e-11!1;CL:0000359!6.51e-11!32;CL:0000192!3.27e-08!42;CL:0000514!3.27e-08!42|ontology_enrichment_celltype_v019=CL:0000054;4.52e-50;2!CL:0000137;4.52e-50;2!CL:0000092;4.52e-50;2!CL:0002092;3.02e-11;10|ontology_enrichment_celltype_v019_2=CL:0000054,4.52e-50,2;CL:0000137,4.52e-50,2;CL:0000092,4.52e-50,2;CL:0002092,3.02e-11,10;CL:0000062,2.37e-10,11;CL:0000375,2.37e-10,11;CL:0000335,2.37e-10,11|ontology_enrichment_development_v019=CL:0000335;2.37e-10;11|ontology_enrichment_disease=DOID:0060085!9.57e-12!1;DOID:3165!9.57e-12!1;DOID:0060121!9.57e-12!1;DOID:2438!9.57e-12!1;DOID:4418!9.57e-12!1;DOID:3347!1.60e-11!1;DOID:3571!2.68e-11!1;DOID:3112!4.01e-11!1;DOID:201!8.95e-08!6;DOID:0060100!8.95e-08!6|ontology_enrichment_disease_v019=DOID:0060085;2.55e-98;1!DOID:3165;2.55e-98;1!DOID:0060121;2.55e-98;1!DOID:2438;2.55e-98;1!DOID:4418;2.55e-98;1!DOID:200;4.52e-50;2!DOID:4305;4.52e-50;2!DOID:0060072;7.14e-26;4!DOID:201;9.07e-18;6!DOID:0060100;9.07e-18;6!DOID:7;1.57e-09;39|ontology_enrichment_disease_v019_2=DOID:0060085,2.55e-98,1;DOID:3165,2.55e-98,1;DOID:0060121,2.55e-98,1;DOID:2438,2.55e-98,1;DOID:4418,2.55e-98,1;DOID:200,4.52e-50,2;DOID:4305,4.52e-50,2;DOID:0060072,7.14e-26,4;DOID:201,9.07e-18,6;DOID:0060100,9.07e-18,6;DOID:7,2.03e-11,39|ontology_enrichment_uberon=UBERON:0002046!5.47e-18!5;UBERON:0004117!5.47e-18!5;UBERON:0007689!5.47e-18!5;UBERON:0007123!5.47e-18!5;UBERON:0003091!5.47e-18!5;UBERON:0001621!2.59e-14!3;UBERON:0001282!4.91e-11!1;UBERON:0009842!4.91e-11!1;UBERON:0003704!4.91e-11!1;UBERON:0001171!4.91e-11!1;UBERON:0001172!4.91e-11!1;UBERON:0001280!8.96e-11!4;UBERON:0004647!8.96e-11!4;UBERON:0004573!1.43e-10!33;UBERON:0004571!1.43e-10!33;UBERON:0002368!1.01e-09!35;UBERON:0003498!5.95e-09!5;UBERON:0005985!5.95e-09!5;UBERON:0009722!1.72e-08!11;UBERON:0007690!1.72e-08!11;UBERON:0001637!3.27e-08!42;UBERON:0003509!3.27e-08!42;UBERON:0004572!3.27e-08!42;UBERON:0001981!1.68e-07!60;UBERON:0007500!1.68e-07!60;UBERON:0004537!1.68e-07!60;UBERON:0006965!1.68e-07!60;UBERON:0000949!1.81e-07!45;UBERON:0000490!4.97e-07!138|ontology_enrichment_uberon_v019=UBERON:0002369;4.27e-34;3!UBERON:0001235;4.27e-34;3!UBERON:0006858;4.27e-34;3!UBERON:0000014;7.14e-26;4!UBERON:0002371;1.33e-09;12!UBERON:0001851;5.55e-08;15!UBERON:0001474;7.60e-07;18|ontology_enrichment_uberon_v019_2=UBERON:0002369,4.27e-34,3;UBERON:0001235,4.27e-34,3;UBERON:0006858,4.27e-34,3;UBERON:0000014,7.14e-26,4;UBERON:0001851,5.55e-08,15|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31481234683064,0,0,0,0.869932992075073,0.55597265731176,0,0,0,0,0,0,0,0,0,0,0,0.404364963146632,0,0.421258456238981,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,13.713738957695,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.693373365065693,0,0,0,0,0,0,0,0,0,0,0,0,1.58971689362392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.706756583783524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.690359926060101,0,0,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705789743431384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr4:34480309..34480321,-}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C158 | |||
|description=CAGE_peak_at_chr4:34480309..34480321,- | |||
|id=chr4:34480309..34480321,- | |||
|ontology_enrichment_celltype=CL:0002592!2.59e-14!3;CL:0000864!2.68e-11!1;CL:0000091!2.68e-11!1;CL:0000359!6.51e-11!32;CL:0000192!3.27e-08!42;CL:0000514!3.27e-08!42 | |||
|ontology_enrichment_celltype_v019=CL:0000054;4.52e-50;2!CL:0000137;4.52e-50;2!CL:0000092;4.52e-50;2!CL:0002092;3.02e-11;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000054,4.52e-50,2;CL:0000137,4.52e-50,2;CL:0000092,4.52e-50,2;CL:0002092,3.02e-11,10;CL:0000062,2.37e-10,11;CL:0000375,2.37e-10,11;CL:0000335,2.37e-10,11 | |||
|ontology_enrichment_development_v019=CL:0000335;2.37e-10;11 | |||
|ontology_enrichment_disease=DOID:0060085!9.57e-12!1;DOID:3165!9.57e-12!1;DOID:0060121!9.57e-12!1;DOID:2438!9.57e-12!1;DOID:4418!9.57e-12!1;DOID:3347!1.60e-11!1;DOID:3571!2.68e-11!1;DOID:3112!4.01e-11!1;DOID:201!8.95e-08!6;DOID:0060100!8.95e-08!6 | |||
|ontology_enrichment_disease_v019=DOID:0060085;2.55e-98;1!DOID:3165;2.55e-98;1!DOID:0060121;2.55e-98;1!DOID:2438;2.55e-98;1!DOID:4418;2.55e-98;1!DOID:200;4.52e-50;2!DOID:4305;4.52e-50;2!DOID:0060072;7.14e-26;4!DOID:201;9.07e-18;6!DOID:0060100;9.07e-18;6!DOID:7;1.57e-09;39 | |||
|ontology_enrichment_disease_v019_2=DOID:0060085,2.55e-98,1;DOID:3165,2.55e-98,1;DOID:0060121,2.55e-98,1;DOID:2438,2.55e-98,1;DOID:4418,2.55e-98,1;DOID:200,4.52e-50,2;DOID:4305,4.52e-50,2;DOID:0060072,7.14e-26,4;DOID:201,9.07e-18,6;DOID:0060100,9.07e-18,6;DOID:7,2.03e-11,39 | |||
|ontology_enrichment_uberon=UBERON:0002046!5.47e-18!5;UBERON:0004117!5.47e-18!5;UBERON:0007689!5.47e-18!5;UBERON:0007123!5.47e-18!5;UBERON:0003091!5.47e-18!5;UBERON:0001621!2.59e-14!3;UBERON:0001282!4.91e-11!1;UBERON:0009842!4.91e-11!1;UBERON:0003704!4.91e-11!1;UBERON:0001171!4.91e-11!1;UBERON:0001172!4.91e-11!1;UBERON:0001280!8.96e-11!4;UBERON:0004647!8.96e-11!4;UBERON:0004573!1.43e-10!33;UBERON:0004571!1.43e-10!33;UBERON:0002368!1.01e-09!35;UBERON:0003498!5.95e-09!5;UBERON:0005985!5.95e-09!5;UBERON:0009722!1.72e-08!11;UBERON:0007690!1.72e-08!11;UBERON:0001637!3.27e-08!42;UBERON:0003509!3.27e-08!42;UBERON:0004572!3.27e-08!42;UBERON:0001981!1.68e-07!60;UBERON:0007500!1.68e-07!60;UBERON:0004537!1.68e-07!60;UBERON:0006965!1.68e-07!60;UBERON:0000949!1.81e-07!45;UBERON:0000490!4.97e-07!138 | |||
|ontology_enrichment_uberon_v019=UBERON:0002369;4.27e-34;3!UBERON:0001235;4.27e-34;3!UBERON:0006858;4.27e-34;3!UBERON:0000014;7.14e-26;4!UBERON:0002371;1.33e-09;12!UBERON:0001851;5.55e-08;15!UBERON:0001474;7.60e-07;18 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002369,4.27e-34,3;UBERON:0001235,4.27e-34,3;UBERON:0006858,4.27e-34,3;UBERON:0000014,7.14e-26,4;UBERON:0001851,5.55e-08,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31481234683064,0,0,0,0.869932992075073,0.55597265731176,0,0,0,0,0,0,0,0,0,0,0,0.404364963146632,0,0.421258456238981,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.270455678475983,0,0,0,0,13.713738957695,0,0,0,0,0,0,0,0.111308705022906,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113942055847001,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.693373365065693,0,0,0,0,0,0,0,0,0,0,0,0,1.58971689362392,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.360299883542404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.706756583783524,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.690359926060101,0,0,0,0,0,0.163771917510097,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.705789743431384,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131862580613,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr4:34480309..34480321,- | |||
}} |
Revision as of 10:43, 13 September 2013
Short description: | p@chr4:34480309..34480321, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:34480309..34480321, - |
Coexpression cluster: | C158_adrenal_gastric_temporal_parietal_duodenum_caudate_putamen |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone matrix secreting cell | 4.52e-50 | 2 |
osteocyte | 4.52e-50 | 2 |
osteoclast | 4.52e-50 | 2 |
bone marrow cell | 3.02e-11 | 10 |
osteoblast | 2.37e-10 | 11 |
osteoprogenitor cell | 2.37e-10 | 11 |
mesenchyme condensation cell | 2.37e-10 | 11 |
Ontology term | p-value | n |
---|---|---|
adrenal gland | 4.27e-34 | 3 |
adrenal cortex | 4.27e-34 | 3 |
adrenal/interrenal gland | 4.27e-34 | 3 |
zone of skin | 7.14e-26 | 4 |
cortex | 5.55e-08 | 15 |
Ontology term | p-value | n |
---|---|---|
organ system benign neoplasm | 2.55e-98 | 1 |
skin benign neoplasm | 2.55e-98 | 1 |
integumentary system benign neoplasm | 2.55e-98 | 1 |
dermis tumor | 2.55e-98 | 1 |
cutaneous fibrous histiocytoma | 2.55e-98 | 1 |
giant cell tumor | 4.52e-50 | 2 |
bone giant cell tumor | 4.52e-50 | 2 |
benign neoplasm | 7.14e-26 | 4 |
connective tissue cancer | 9.07e-18 | 6 |
musculoskeletal system cancer | 9.07e-18 | 6 |
disease of anatomical entity | 2.03e-11 | 39 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.