FFCP PHASE1:Hg19::chr4:167119468..167119481,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr4:167119468..167119481,+|id=chr4:167119468..167119481,+|ontology_enrichment_celltype=CL:0002322!1.30e-19!5;CL:0000039!2.40e-14!7;CL:0000586!2.40e-14!7;CL:0002602!4.22e-08!2;CL:0000066!5.41e-07!254|ontology_enrichment_celltype_v019=CL:0000039;4.44e-33;7!CL:0000586;4.44e-33;7!CL:0002322;2.31e-12;5!CL:0000054;1.29e-08;2!CL:0000137;1.29e-08;2!CL:0000092;1.29e-08;2|ontology_enrichment_celltype_v019_2=CL:0000039,4.63e-33,7;CL:0000586,4.63e-33,7;CL:0002322,2.00e-12,5;CL:0000054,1.29e-08,2;CL:0000137,1.29e-08,2;CL:0000092,1.29e-08,2|ontology_enrichment_development_v019=UBERON:0009117;1.14e-35;10!UBERON:0005564;1.14e-35;10|ontology_enrichment_disease=DOID:305!2.13e-16!106;DOID:0050687!1.82e-15!143;DOID:162!1.38e-11!235;DOID:14566!3.54e-11!239;DOID:3095!1.64e-10!22;DOID:2994!1.64e-10!22;DOID:4231!4.28e-09!2;DOID:1907!4.28e-09!2|ontology_enrichment_disease_v019=DOID:3095;3.94e-31;22!DOID:2994;3.94e-31;22!DOID:4231;5.24e-29;2!DOID:1907;5.24e-29;2!DOID:201;6.23e-22;6!DOID:0060100;6.23e-22;6!DOID:0060085;6.44e-16;1!DOID:3165;6.44e-16;1!DOID:0060121;6.44e-16;1!DOID:2438;6.44e-16;1!DOID:4418;6.44e-16;1!DOID:200;1.29e-08;2!DOID:4305;1.29e-08;2|ontology_enrichment_disease_v019_2=DOID:3095,3.68e-31,22;DOID:2994,3.68e-31,22;DOID:4231,1.07e-28,2;DOID:1907,1.07e-28,2;DOID:201,8.90e-22,6;DOID:0060100,8.90e-22,6;DOID:0060085,6.44e-16,1;DOID:3165,6.44e-16,1;DOID:0060121,6.44e-16,1;DOID:2438,6.44e-16,1;DOID:4418,6.44e-16,1;DOID:0050687,7.13e-09,143;DOID:200,1.29e-08,2;DOID:4305,1.29e-08,2;DOID:305,6.83e-08,106|ontology_enrichment_uberon=UBERON:0001737!1.77e-33!9;UBERON:0001557!2.91e-18!19;UBERON:0000473!1.54e-12!8;UBERON:0008947!6.28e-10!38;UBERON:0003258!6.28e-10!38;UBERON:0000072!2.65e-09!46;UBERON:0003135!5.12e-09!11;UBERON:0009568!4.22e-08!2;UBERON:0002216!4.22e-08!2;UBERON:0002209!4.22e-08!2;UBERON:0002213!4.22e-08!2;UBERON:0004267!4.22e-08!2;UBERON:0006444!4.22e-08!2;UBERON:0001995!4.22e-08!2;UBERON:0004715!4.22e-08!2;UBERON:0001468!4.22e-08!2;UBERON:0001130!4.22e-08!2;UBERON:0001066!4.22e-08!2;UBERON:0000065!9.47e-08!53|ontology_enrichment_uberon_v019=UBERON:0000473;5.29e-29;8!UBERON:0003135;3.29e-21;11!UBERON:0000991;4.72e-17;21!UBERON:0003101;9.17e-11;22!UBERON:0000079;9.17e-11;22|ontology_enrichment_uberon_v019_2=UBERON:0000473,5.49e-29,8;UBERON:0003135,3.38e-21,11;UBERON:0000991,4.65e-17,21;UBERON:0009196,4.65e-17,21;UBERON:0009117,4.65e-17,21;UBERON:0005564,4.65e-17,21;UBERON:0004176,2.75e-16,22;UBERON:0003101,9.29e-11,22;UBERON:0000079,9.29e-11,22;UBERON:0002323,8.88e-08,46;UBERON:0003133,1.89e-07,48;UBERON:0004458,2.69e-07,49|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731842236777572,1.45782745153634,0.813357600086629,0.207322110030741,2.77552935963191,0,0,0,0,0,0,0.591534000199219,0.842923450390509,0.482022059766964,0.882351781859152,0.653638332277218,0.71181185733329,1.61797569792197,0.588664395376038,0.769494313892781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.835218521685727,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511343412510774,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21787692703798,0,0,0,0.23056390438806,0,0,1.27600463892768,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.7498698564166,0,0,0.400794101257669,0,0,0,0,0,0,0,0,0,0.627617077873999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.906496732161005,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,1.13503190713367,1.28874165176289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr4:167119468..167119481,+ | |||
|id=chr4:167119468..167119481,+ | |||
|ontology_enrichment_celltype=CL:0002322!1.30e-19!5;CL:0000039!2.40e-14!7;CL:0000586!2.40e-14!7;CL:0002602!4.22e-08!2;CL:0000066!5.41e-07!254 | |||
|ontology_enrichment_celltype_v019=CL:0000039;4.44e-33;7!CL:0000586;4.44e-33;7!CL:0002322;2.31e-12;5!CL:0000054;1.29e-08;2!CL:0000137;1.29e-08;2!CL:0000092;1.29e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000039,4.63e-33,7;CL:0000586,4.63e-33,7;CL:0002322,2.00e-12,5;CL:0000054,1.29e-08,2;CL:0000137,1.29e-08,2;CL:0000092,1.29e-08,2 | |||
|ontology_enrichment_development_v019=UBERON:0009117;1.14e-35;10!UBERON:0005564;1.14e-35;10 | |||
|ontology_enrichment_disease=DOID:305!2.13e-16!106;DOID:0050687!1.82e-15!143;DOID:162!1.38e-11!235;DOID:14566!3.54e-11!239;DOID:3095!1.64e-10!22;DOID:2994!1.64e-10!22;DOID:4231!4.28e-09!2;DOID:1907!4.28e-09!2 | |||
|ontology_enrichment_disease_v019=DOID:3095;3.94e-31;22!DOID:2994;3.94e-31;22!DOID:4231;5.24e-29;2!DOID:1907;5.24e-29;2!DOID:201;6.23e-22;6!DOID:0060100;6.23e-22;6!DOID:0060085;6.44e-16;1!DOID:3165;6.44e-16;1!DOID:0060121;6.44e-16;1!DOID:2438;6.44e-16;1!DOID:4418;6.44e-16;1!DOID:200;1.29e-08;2!DOID:4305;1.29e-08;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,3.68e-31,22;DOID:2994,3.68e-31,22;DOID:4231,1.07e-28,2;DOID:1907,1.07e-28,2;DOID:201,8.90e-22,6;DOID:0060100,8.90e-22,6;DOID:0060085,6.44e-16,1;DOID:3165,6.44e-16,1;DOID:0060121,6.44e-16,1;DOID:2438,6.44e-16,1;DOID:4418,6.44e-16,1;DOID:0050687,7.13e-09,143;DOID:200,1.29e-08,2;DOID:4305,1.29e-08,2;DOID:305,6.83e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0001737!1.77e-33!9;UBERON:0001557!2.91e-18!19;UBERON:0000473!1.54e-12!8;UBERON:0008947!6.28e-10!38;UBERON:0003258!6.28e-10!38;UBERON:0000072!2.65e-09!46;UBERON:0003135!5.12e-09!11;UBERON:0009568!4.22e-08!2;UBERON:0002216!4.22e-08!2;UBERON:0002209!4.22e-08!2;UBERON:0002213!4.22e-08!2;UBERON:0004267!4.22e-08!2;UBERON:0006444!4.22e-08!2;UBERON:0001995!4.22e-08!2;UBERON:0004715!4.22e-08!2;UBERON:0001468!4.22e-08!2;UBERON:0001130!4.22e-08!2;UBERON:0001066!4.22e-08!2;UBERON:0000065!9.47e-08!53 | |||
|ontology_enrichment_uberon_v019=UBERON:0000473;5.29e-29;8!UBERON:0003135;3.29e-21;11!UBERON:0000991;4.72e-17;21!UBERON:0003101;9.17e-11;22!UBERON:0000079;9.17e-11;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000473,5.49e-29,8;UBERON:0003135,3.38e-21,11;UBERON:0000991,4.65e-17,21;UBERON:0009196,4.65e-17,21;UBERON:0009117,4.65e-17,21;UBERON:0005564,4.65e-17,21;UBERON:0004176,2.75e-16,22;UBERON:0003101,9.29e-11,22;UBERON:0000079,9.29e-11,22;UBERON:0002323,8.88e-08,46;UBERON:0003133,1.89e-07,48;UBERON:0004458,2.69e-07,49 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.731842236777572,1.45782745153634,0.813357600086629,0.207322110030741,2.77552935963191,0,0,0,0,0,0,0.591534000199219,0.842923450390509,0.482022059766964,0.882351781859152,0.653638332277218,0.71181185733329,1.61797569792197,0.588664395376038,0.769494313892781,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0.438450885253763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.735120647943095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.835218521685727,0,0,0,0,0,0,0.121360521749513,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511343412510774,0,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.21787692703798,0,0,0,0.23056390438806,0,0,1.27600463892768,0,0,0,0,0,0,0,0,0.189753732724185,0,0,0.163232808159148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.7498698564166,0,0,0.400794101257669,0,0,0,0,0,0,0,0,0,0.627617077873999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.906496732161005,0,0,0,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0.245772908753719,0,0,0,0,1.13503190713367,1.28874165176289,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.685952037749674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.452888530700021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38783067318587,1.74824915141913,1.14028650910293,8.66905052806845,1.3360870263278,2.6649520865105,4.011320628678,0,0.267964130156178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr4:167119468..167119481,+ | |||
}} |
Revision as of 03:14, 13 September 2013
Short description: | p@chr4:167119468..167119481, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:167119468..167119481, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
germ line cell | 4.63e-33 | 7 |
germ cell | 4.63e-33 | 7 |
embryonic stem cell | 2.00e-12 | 5 |
bone matrix secreting cell | 1.29e-08 | 2 |
osteocyte | 1.29e-08 | 2 |
osteoclast | 1.29e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
testis | 5.49e-29 | 8 |
male reproductive organ | 3.38e-21 | 11 |
gonad | 4.65e-17 | 21 |
indifferent external genitalia | 4.65e-17 | 21 |
indifferent gonad | 4.65e-17 | 21 |
gonad primordium | 4.65e-17 | 21 |
external genitalia | 2.75e-16 | 22 |
male organism | 9.29e-11 | 22 |
male reproductive system | 9.29e-11 | 22 |
body cavity | 8.88e-08 | 46 |
reproductive organ | 1.89e-07 | 48 |
body cavity or lining | 2.69e-07 | 49 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.68e-31 | 22 |
germ cell cancer | 3.68e-31 | 22 |
histiocytoma | 1.07e-28 | 2 |
malignant fibroxanthoma | 1.07e-28 | 2 |
connective tissue cancer | 8.90e-22 | 6 |
musculoskeletal system cancer | 8.90e-22 | 6 |
organ system benign neoplasm | 6.44e-16 | 1 |
skin benign neoplasm | 6.44e-16 | 1 |
integumentary system benign neoplasm | 6.44e-16 | 1 |
dermis tumor | 6.44e-16 | 1 |
cutaneous fibrous histiocytoma | 6.44e-16 | 1 |
cell type cancer | 7.13e-09 | 143 |
giant cell tumor | 1.29e-08 | 2 |
bone giant cell tumor | 1.29e-08 | 2 |
carcinoma | 6.83e-08 | 106 |
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