FFCP PHASE1:Hg19::chr4:120546882..120546885,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr4:120546882..120546885,-|id=chr4:120546882..120546885,-|ontology_enrichment_celltype=CL:0002622!7.95e-10!3;CL:0002504!1.28e-09!3;CL:1000279!1.28e-09!3;CL:1000280!1.28e-09!3|ontology_enrichment_celltype_v019=CL:0002622;2.40e-66;3!CL:0002363;7.14e-26;2!CL:0002504;9.45e-18;3!CL:1000279;9.45e-18;3!CL:1000280;9.45e-18;3!CL:0000499;3.78e-08;28|ontology_enrichment_celltype_v019_2=CL:0002622,1.71e-66,3;CL:0002363,9.18e-26,2;CL:0000008,9.18e-26,2;CL:0002504,9.46e-18,3;CL:1000279,9.46e-18,3;CL:1000280,9.46e-18,3;CL:0000499,3.65e-08,28|ontology_enrichment_development_v019=CL:0000008;7.14e-26;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002367!1.12e-11!11;UBERON:0010147!1.12e-11!11;UBERON:0009846!1.12e-11!11;UBERON:0003353!1.12e-11!11;UBERON:0004902!1.12e-11!11;UBERON:0003820!1.12e-11!11;UBERON:0009847!1.12e-11!11;UBERON:0003937!1.32e-10!12;UBERON:0005399!1.32e-10!12;UBERON:0000162!6.42e-09!14;UBERON:0001353!6.42e-09!14;UBERON:0000163!6.42e-09!14;UBERON:0006866!6.42e-09!14;UBERON:0000164!6.42e-09!14;UBERON:0000931!6.42e-09!14;UBERON:0004122!3.03e-08!15;UBERON:0001007!8.69e-07!155;UBERON:0001555!8.69e-07!155;UBERON:0007026!8.69e-07!155|ontology_enrichment_uberon_v019=UBERON:0003566;7.14e-26;2!UBERON:0001777;7.14e-26;2!UBERON:0002367;4.69e-19;11!UBERON:0010147;4.69e-19;11!UBERON:0003937;1.44e-17;12!UBERON:0005399;1.44e-17;12!UBERON:0003891;1.13e-13;4!UBERON:0000964;1.13e-13;4!UBERON:0010409;1.13e-13;4!UBERON:0003101;4.33e-10;22!UBERON:0000079;4.33e-10;22!UBERON:0000077;2.06e-08;27!UBERON:0001155;8.37e-07;9|ontology_enrichment_uberon_v019_2=UBERON:0003566,9.18e-26,2;UBERON:0001777,9.18e-26,2;UBERON:0002367,4.28e-19,11;UBERON:0010147,4.28e-19,11;UBERON:0009846,4.28e-19,11;UBERON:0003353,4.28e-19,11;UBERON:0004902,4.28e-19,11;UBERON:0003820,4.28e-19,11;UBERON:0009847,4.28e-19,11;UBERON:0003937,1.33e-17,12;UBERON:0005399,1.33e-17,12;UBERON:0000162,2.95e-15,14;UBERON:0001353,2.95e-15,14;UBERON:0000163,2.95e-15,14;UBERON:0006866,2.95e-15,14;UBERON:0000164,2.95e-15,14;UBERON:0000931,2.95e-15,14;UBERON:0004122,2.58e-14,15;UBERON:0003891,1.29e-13,4;UBERON:0000964,1.29e-13,4;UBERON:0010409,1.29e-13,4;UBERON:0004348,1.29e-13,4;UBERON:0005427,1.29e-13,4;UBERON:0001046,1.55e-11,19;UBERON:0005157,2.17e-10,47;UBERON:0003101,4.14e-10,22;UBERON:0000079,4.14e-10,22;UBERON:0003064,3.65e-08,28;UBERON:0000077,6.44e-08,29;UBERON:0001155,8.37e-07,9|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0.247266929278557,0,0,0,0,0,0,0.30648779579902,0,0,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0.323292113637624,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0.479249710983165,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.535286966391485,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0.200506470303285,0,0.68888668898764,1.0925470080403,2.09799063935079,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.165018999841176,0,0,0,0,0,0.15350367472613,0,0.107420244868274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,1.07923474549989,0.54907405947211,0.471249609382746,0,0,0,0,0.243713489631284,0,0.272999822815972,0.989838023675989,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103688191397247,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0.19980960958213,0,0.229073192331831,0,0,0,0,0,0,0.305994652908965,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0,0.360299883542404,0,0,0,0,0.393709926058995,0,0,0,0,0.275078873194468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0.28984205722165,0,0,0,0,0.50313580350515,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.463044948647668,0,0,0,0.438568099157414,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0.3062454773532,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.703484977438482,0,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0.348724276104376,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,0.121917924982269,0,0,0,0,0,0,0,0.11294608203896,0,0,0.154348316215889,0,0,0.245148321753905,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0.829169439458779,0,0,0,0,0,0,0,0.202117188958219,0.217716747896961,0,0,0,0,0,0.106727345877715,0,0,0,0.122241444182866,0,0,0,0|short_description=p@chr4:120546882..120546885,-}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr4:120546882..120546885,- | |||
|id=chr4:120546882..120546885,- | |||
|ontology_enrichment_celltype=CL:0002622!7.95e-10!3;CL:0002504!1.28e-09!3;CL:1000279!1.28e-09!3;CL:1000280!1.28e-09!3 | |||
|ontology_enrichment_celltype_v019=CL:0002622;2.40e-66;3!CL:0002363;7.14e-26;2!CL:0002504;9.45e-18;3!CL:1000279;9.45e-18;3!CL:1000280;9.45e-18;3!CL:0000499;3.78e-08;28 | |||
|ontology_enrichment_celltype_v019_2=CL:0002622,1.71e-66,3;CL:0002363,9.18e-26,2;CL:0000008,9.18e-26,2;CL:0002504,9.46e-18,3;CL:1000279,9.46e-18,3;CL:1000280,9.46e-18,3;CL:0000499,3.65e-08,28 | |||
|ontology_enrichment_development_v019=CL:0000008;7.14e-26;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002367!1.12e-11!11;UBERON:0010147!1.12e-11!11;UBERON:0009846!1.12e-11!11;UBERON:0003353!1.12e-11!11;UBERON:0004902!1.12e-11!11;UBERON:0003820!1.12e-11!11;UBERON:0009847!1.12e-11!11;UBERON:0003937!1.32e-10!12;UBERON:0005399!1.32e-10!12;UBERON:0000162!6.42e-09!14;UBERON:0001353!6.42e-09!14;UBERON:0000163!6.42e-09!14;UBERON:0006866!6.42e-09!14;UBERON:0000164!6.42e-09!14;UBERON:0000931!6.42e-09!14;UBERON:0004122!3.03e-08!15;UBERON:0001007!8.69e-07!155;UBERON:0001555!8.69e-07!155;UBERON:0007026!8.69e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0003566;7.14e-26;2!UBERON:0001777;7.14e-26;2!UBERON:0002367;4.69e-19;11!UBERON:0010147;4.69e-19;11!UBERON:0003937;1.44e-17;12!UBERON:0005399;1.44e-17;12!UBERON:0003891;1.13e-13;4!UBERON:0000964;1.13e-13;4!UBERON:0010409;1.13e-13;4!UBERON:0003101;4.33e-10;22!UBERON:0000079;4.33e-10;22!UBERON:0000077;2.06e-08;27!UBERON:0001155;8.37e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003566,9.18e-26,2;UBERON:0001777,9.18e-26,2;UBERON:0002367,4.28e-19,11;UBERON:0010147,4.28e-19,11;UBERON:0009846,4.28e-19,11;UBERON:0003353,4.28e-19,11;UBERON:0004902,4.28e-19,11;UBERON:0003820,4.28e-19,11;UBERON:0009847,4.28e-19,11;UBERON:0003937,1.33e-17,12;UBERON:0005399,1.33e-17,12;UBERON:0000162,2.95e-15,14;UBERON:0001353,2.95e-15,14;UBERON:0000163,2.95e-15,14;UBERON:0006866,2.95e-15,14;UBERON:0000164,2.95e-15,14;UBERON:0000931,2.95e-15,14;UBERON:0004122,2.58e-14,15;UBERON:0003891,1.29e-13,4;UBERON:0000964,1.29e-13,4;UBERON:0010409,1.29e-13,4;UBERON:0004348,1.29e-13,4;UBERON:0005427,1.29e-13,4;UBERON:0001046,1.55e-11,19;UBERON:0005157,2.17e-10,47;UBERON:0003101,4.14e-10,22;UBERON:0000079,4.14e-10,22;UBERON:0003064,3.65e-08,28;UBERON:0000077,6.44e-08,29;UBERON:0001155,8.37e-07,9 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0.12663051166458,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0.247266929278557,0,0,0,0,0,0,0.30648779579902,0,0,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0.323292113637624,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171567810298526,0,0,0,0,0,1.03993478527958,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0.479249710983165,0,0,0,0,0,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0.535286966391485,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0.160853921143607,0,0,0,0,0,0,0,0.200506470303285,0,0.68888668898764,1.0925470080403,2.09799063935079,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0915694648183434,0.165018999841176,0,0,0,0,0,0.15350367472613,0,0.107420244868274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,1.07923474549989,0.54907405947211,0.471249609382746,0,0,0,0,0.243713489631284,0,0.272999822815972,0.989838023675989,0,0,0,0,0,0,0,0,0,0,0,0,0.354761064070598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0.173624994933292,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103688191397247,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0.19980960958213,0,0.229073192331831,0,0,0,0,0,0,0.305994652908965,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0,0.360299883542404,0,0,0,0,0.393709926058995,0,0,0,0,0.275078873194468,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0.28984205722165,0,0,0,0,0.50313580350515,0,0,0.151230923763239,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.463044948647668,0,0,0,0.438568099157414,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0.3062454773532,0,0,0.159633859057151,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.703484977438482,0,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0.348724276104376,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,0.121917924982269,0,0,0,0,0,0,0,0.11294608203896,0,0,0.154348316215889,0,0,0.245148321753905,0,0,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0.101988829741982,0,0,0,0,0,0.829169439458779,0,0,0,0,0,0,0,0.202117188958219,0.217716747896961,0,0,0,0,0,0.106727345877715,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p@chr4:120546882..120546885,- | |||
}} |
Revision as of 02:15, 13 September 2013
Short description: | p@chr4:120546882..120546885, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:120546882..120546885, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
prostate stromal cell | 1.71e-66 | 3 |
keratocyte | 9.18e-26 | 2 |
migratory cranial neural crest cell | 9.18e-26 | 2 |
enteric smooth muscle cell | 9.46e-18 | 3 |
smooth muscle cell of large intestine | 9.46e-18 | 3 |
smooth muscle cell of colon | 9.46e-18 | 3 |
stromal cell | 3.65e-08 | 28 |
Ontology term | p-value | n |
---|---|---|
head connective tissue | 9.18e-26 | 2 |
substantia propria of cornea | 9.18e-26 | 2 |
prostate gland | 4.28e-19 | 11 |
male accessory sex gland | 4.28e-19 | 11 |
embryonic cloacal epithelium | 4.28e-19 | 11 |
epithelium of hindgut | 4.28e-19 | 11 |
urogenital sinus epithelium | 4.28e-19 | 11 |
prostate bud | 4.28e-19 | 11 |
prostate field | 4.28e-19 | 11 |
sex gland | 1.33e-17 | 12 |
male reproductive gland | 1.33e-17 | 12 |
cloaca | 2.95e-15 | 14 |
anal region | 2.95e-15 | 14 |
embryonic cloaca | 2.95e-15 | 14 |
terminal part of digestive tract | 2.95e-15 | 14 |
primitive urogenital sinus | 2.95e-15 | 14 |
proctodeum | 2.95e-15 | 14 |
genitourinary system | 2.58e-14 | 15 |
stroma | 1.29e-13 | 4 |
cornea | 1.29e-13 | 4 |
eye surface | 1.29e-13 | 4 |
optic eminence | 1.29e-13 | 4 |
corneal primordium | 1.29e-13 | 4 |
hindgut | 1.55e-11 | 19 |
epithelial fold | 2.17e-10 | 47 |
male organism | 4.14e-10 | 22 |
male reproductive system | 4.14e-10 | 22 |
intermediate mesoderm | 3.65e-08 | 28 |
mixed endoderm/mesoderm-derived structure | 6.44e-08 | 29 |
colon | 8.37e-07 | 9 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.