FFCP PHASE1:Hg19::chr3:98275196..98275205,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr3:98275196..98275205,-|id=chr3:98275196..98275205,-|ontology_enrichment_celltype=CL:0000080!9.83e-10!6;CL:0000945!7.23e-09!24;CL:0000826!7.23e-09!24;CL:0002127!7.03e-08!1;CL:0000914!7.03e-08!1;CL:0000911!7.03e-08!1;CL:0000814!7.03e-08!1;CL:0002042!7.03e-08!1;CL:0002039!7.03e-08!1;CL:0002040!7.03e-08!1;CL:0002041!7.03e-08!1;CL:0000946!9.10e-08!1;CL:0000786!9.10e-08!1;CL:0000980!9.10e-08!1|ontology_enrichment_celltype_v019=CL:0002127;1.81e-40;1!CL:0000911;1.81e-40;1!CL:0000814;1.81e-40;1|ontology_enrichment_celltype_v019_2=CL:0002127,9.91e-41,1;CL:0000914,9.91e-41,1;CL:0000911,9.91e-41,1;CL:0000814,9.91e-41,1;CL:0002042,9.91e-41,1;CL:0002039,9.91e-41,1;CL:0002040,9.91e-41,1;CL:0002041,9.91e-41,1;CL:0000893,3.81e-21,2;CL:0002489,3.81e-21,2;CL:0000809,3.81e-21,2;CL:0000808,3.81e-21,2;CL:0000894,3.81e-21,2;CL:0000806,3.81e-21,2;CL:0000807,3.81e-21,2;CL:0000805,3.81e-21,2;CL:0002425,3.81e-21,2|ontology_enrichment_development_v019=CL:0002425;5.15e-21;2!UBERON:0004872;5.08e-07;7|ontology_enrichment_disease=DOID:630!7.50e-08!1;DOID:0050177!7.50e-08!1;DOID:0050427!7.50e-08!1;DOID:0060060!2.35e-07!1;DOID:0060061!2.35e-07!1;DOID:8691!2.35e-07!1;DOID:0060085!2.50e-07!1;DOID:3165!2.50e-07!1;DOID:0060121!2.50e-07!1;DOID:2438!2.50e-07!1;DOID:4418!2.50e-07!1|ontology_enrichment_disease_v019=DOID:630;1.81e-40;1!DOID:0050177;1.81e-40;1!DOID:0050427;1.81e-40;1|ontology_enrichment_disease_v019_2=DOID:630,1.48e-40,1;DOID:0050177,1.48e-40,1;DOID:0050427,1.48e-40,1|ontology_enrichment_uberon=UBERON:0002294!1.92e-08!7;UBERON:0001173!1.92e-08!7;UBERON:0004912!1.92e-08!7;UBERON:0001282!8.00e-08!1;UBERON:0009842!8.00e-08!1;UBERON:0003704!8.00e-08!1;UBERON:0001171!8.00e-08!1;UBERON:0001172!8.00e-08!1;UBERON:0002372!4.90e-07!1;UBERON:0001961!4.90e-07!1;UBERON:0001744!4.90e-07!1;UBERON:0001735!4.90e-07!1;UBERON:0002394!5.07e-07!4;UBERON:0003928!5.07e-07!4|ontology_enrichment_uberon_v019=UBERON:0001282;1.81e-40;1!UBERON:0009842;1.81e-40;1!UBERON:0003704;1.81e-40;1!UBERON:0001171;1.81e-40;1!UBERON:0001172;1.81e-40;1!UBERON:0002106;1.22e-14;3!UBERON:0001280;1.71e-14;3!UBERON:0004647;1.71e-14;3!UBERON:0002394;3.26e-11;4!UBERON:0003928;3.26e-11;4!UBERON:0004177;2.53e-09;5!UBERON:0005057;2.53e-09;5!UBERON:0002294;5.86e-07;7!UBERON:0001173;5.86e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0001282,2.21e-40,1;UBERON:0009842,2.21e-40,1;UBERON:0003704,2.21e-40,1;UBERON:0001171,2.21e-40,1;UBERON:0001172,2.21e-40,1;UBERON:0004177,1.02e-23,7;UBERON:0005057,1.02e-23,7;UBERON:0002106,1.22e-14,3;UBERON:0004854,1.22e-14,3;UBERON:0009034,1.22e-14,3;UBERON:0002095,1.22e-14,3;UBERON:0004782,1.22e-14,3;UBERON:0003281,1.22e-14,3;UBERON:0009664,1.22e-14,3;UBERON:0002296,1.22e-14,3;UBERON:0005602,1.22e-14,3;UBERON:0001179,1.22e-14,3;UBERON:0006293,1.22e-14,3;UBERON:0001280,1.83e-14,3;UBERON:0004647,1.83e-14,3;UBERON:0005171,1.83e-14,3;UBERON:0002370,2.80e-11,4;UBERON:0005058,2.80e-11,4;UBERON:0009113,2.80e-11,4;UBERON:0003295,2.80e-11,4;UBERON:0005562,2.80e-11,4;UBERON:0003351,5.92e-08,6;UBERON:0002394,6.78e-08,6;UBERON:0003928,6.78e-08,6|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.328402357799783,0.550975469195755,0,0.383829398097213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0.130059347559878,0.657751618414705,0,1.15921234294021,0,0,0,0.226618685395132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79336230389644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0.642352300414798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738508832766417,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25336261431701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.489698424477443,0,0,0,0,0,0.889563386041866,0.123563938946503,0.313265848516366,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19871461170299,0,0,0.400794101257669,0,0,0,0,0,0,0.124252535565433,0,0,0,0.101998217636322,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr3:98275196..98275205,- | |||
|id=chr3:98275196..98275205,- | |||
|ontology_enrichment_celltype=CL:0000080!9.83e-10!6;CL:0000945!7.23e-09!24;CL:0000826!7.23e-09!24;CL:0002127!7.03e-08!1;CL:0000914!7.03e-08!1;CL:0000911!7.03e-08!1;CL:0000814!7.03e-08!1;CL:0002042!7.03e-08!1;CL:0002039!7.03e-08!1;CL:0002040!7.03e-08!1;CL:0002041!7.03e-08!1;CL:0000946!9.10e-08!1;CL:0000786!9.10e-08!1;CL:0000980!9.10e-08!1 | |||
|ontology_enrichment_celltype_v019=CL:0002127;1.81e-40;1!CL:0000911;1.81e-40;1!CL:0000814;1.81e-40;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002127,9.91e-41,1;CL:0000914,9.91e-41,1;CL:0000911,9.91e-41,1;CL:0000814,9.91e-41,1;CL:0002042,9.91e-41,1;CL:0002039,9.91e-41,1;CL:0002040,9.91e-41,1;CL:0002041,9.91e-41,1;CL:0000893,3.81e-21,2;CL:0002489,3.81e-21,2;CL:0000809,3.81e-21,2;CL:0000808,3.81e-21,2;CL:0000894,3.81e-21,2;CL:0000806,3.81e-21,2;CL:0000807,3.81e-21,2;CL:0000805,3.81e-21,2;CL:0002425,3.81e-21,2 | |||
|ontology_enrichment_development_v019=CL:0002425;5.15e-21;2!UBERON:0004872;5.08e-07;7 | |||
|ontology_enrichment_disease=DOID:630!7.50e-08!1;DOID:0050177!7.50e-08!1;DOID:0050427!7.50e-08!1;DOID:0060060!2.35e-07!1;DOID:0060061!2.35e-07!1;DOID:8691!2.35e-07!1;DOID:0060085!2.50e-07!1;DOID:3165!2.50e-07!1;DOID:0060121!2.50e-07!1;DOID:2438!2.50e-07!1;DOID:4418!2.50e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:630;1.81e-40;1!DOID:0050177;1.81e-40;1!DOID:0050427;1.81e-40;1 | |||
|ontology_enrichment_disease_v019_2=DOID:630,1.48e-40,1;DOID:0050177,1.48e-40,1;DOID:0050427,1.48e-40,1 | |||
|ontology_enrichment_uberon=UBERON:0002294!1.92e-08!7;UBERON:0001173!1.92e-08!7;UBERON:0004912!1.92e-08!7;UBERON:0001282!8.00e-08!1;UBERON:0009842!8.00e-08!1;UBERON:0003704!8.00e-08!1;UBERON:0001171!8.00e-08!1;UBERON:0001172!8.00e-08!1;UBERON:0002372!4.90e-07!1;UBERON:0001961!4.90e-07!1;UBERON:0001744!4.90e-07!1;UBERON:0001735!4.90e-07!1;UBERON:0002394!5.07e-07!4;UBERON:0003928!5.07e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0001282;1.81e-40;1!UBERON:0009842;1.81e-40;1!UBERON:0003704;1.81e-40;1!UBERON:0001171;1.81e-40;1!UBERON:0001172;1.81e-40;1!UBERON:0002106;1.22e-14;3!UBERON:0001280;1.71e-14;3!UBERON:0004647;1.71e-14;3!UBERON:0002394;3.26e-11;4!UBERON:0003928;3.26e-11;4!UBERON:0004177;2.53e-09;5!UBERON:0005057;2.53e-09;5!UBERON:0002294;5.86e-07;7!UBERON:0001173;5.86e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001282,2.21e-40,1;UBERON:0009842,2.21e-40,1;UBERON:0003704,2.21e-40,1;UBERON:0001171,2.21e-40,1;UBERON:0001172,2.21e-40,1;UBERON:0004177,1.02e-23,7;UBERON:0005057,1.02e-23,7;UBERON:0002106,1.22e-14,3;UBERON:0004854,1.22e-14,3;UBERON:0009034,1.22e-14,3;UBERON:0002095,1.22e-14,3;UBERON:0004782,1.22e-14,3;UBERON:0003281,1.22e-14,3;UBERON:0009664,1.22e-14,3;UBERON:0002296,1.22e-14,3;UBERON:0005602,1.22e-14,3;UBERON:0001179,1.22e-14,3;UBERON:0006293,1.22e-14,3;UBERON:0001280,1.83e-14,3;UBERON:0004647,1.83e-14,3;UBERON:0005171,1.83e-14,3;UBERON:0002370,2.80e-11,4;UBERON:0005058,2.80e-11,4;UBERON:0009113,2.80e-11,4;UBERON:0003295,2.80e-11,4;UBERON:0005562,2.80e-11,4;UBERON:0003351,5.92e-08,6;UBERON:0002394,6.78e-08,6;UBERON:0003928,6.78e-08,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.152826811495903,0.328402357799783,0.550975469195755,0,0.383829398097213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.639337125799041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0.130059347559878,0.657751618414705,0,1.15921234294021,0,0,0,0.226618685395132,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.79336230389644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0.642352300414798,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738508832766417,0,0.0898683511473268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.25336261431701,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.489698424477443,0,0,0,0,0,0.889563386041866,0.123563938946503,0.313265848516366,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19871461170299,0,0,0.400794101257669,0,0,0,0,0,0,0.124252535565433,0,0,0,0.101998217636322,0.288950589901519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19998739585493,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.921871900446234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.39858774219829,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,1.60284246151616 | |||
|short_description=p@chr3:98275196..98275205,- | |||
}} |
Revision as of 01:37, 13 September 2013
Short description: | p@chr3:98275196..98275205, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr3:98275196..98275205, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
innate effector T cell | 9.91e-41 | 1 |
immature NK T cell | 9.91e-41 | 1 |
effector T cell | 9.91e-41 | 1 |
mature NK T cell | 9.91e-41 | 1 |
immature NK T cell stage IV | 9.91e-41 | 1 |
immature NK T cell stage I | 9.91e-41 | 1 |
immature NK T cell stage II | 9.91e-41 | 1 |
immature NK T cell stage III | 9.91e-41 | 1 |
thymocyte | 3.81e-21 | 2 |
double negative thymocyte | 3.81e-21 | 2 |
double-positive, alpha-beta thymocyte | 3.81e-21 | 2 |
DN4 thymocyte | 3.81e-21 | 2 |
DN1 thymic pro-T cell | 3.81e-21 | 2 |
DN2 thymocyte | 3.81e-21 | 2 |
DN3 thymocyte | 3.81e-21 | 2 |
immature single positive thymocyte | 3.81e-21 | 2 |
early T lineage precursor | 3.81e-21 | 2 |
Ontology term | p-value | n |
---|---|---|
intralobular bile duct | 2.21e-40 | 1 |
acinus | 2.21e-40 | 1 |
intrahepatic bile duct | 2.21e-40 | 1 |
portal lobule | 2.21e-40 | 1 |
hepatic acinus | 2.21e-40 | 1 |
hemopoietic organ | 1.02e-23 | 7 |
immune organ | 1.02e-23 | 7 |
spleen | 1.22e-14 | 3 |
gastrointestinal system mesentery | 1.22e-14 | 3 |
stomach region | 1.22e-14 | 3 |
mesentery | 1.22e-14 | 3 |
gastrointestinal system serosa | 1.22e-14 | 3 |
mesentery of stomach | 1.22e-14 | 3 |
gut mesentery | 1.22e-14 | 3 |
dorsal mesentery | 1.22e-14 | 3 |
dorsal mesogastrium | 1.22e-14 | 3 |
peritoneal cavity | 1.22e-14 | 3 |
spleen primordium | 1.22e-14 | 3 |
liver parenchyma | 1.83e-14 | 3 |
liver lobule | 1.83e-14 | 3 |
hepatic duct | 1.83e-14 | 3 |
thymus | 2.80e-11 | 4 |
hemolymphoid system gland | 2.80e-11 | 4 |
thymic region | 2.80e-11 | 4 |
pharyngeal gland | 2.80e-11 | 4 |
thymus primordium | 2.80e-11 | 4 |
pharyngeal epithelium | 5.92e-08 | 6 |
bile duct | 6.78e-08 | 6 |
digestive system duct | 6.78e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 1.48e-40 | 1 |
monogenic disease | 1.48e-40 | 1 |
xeroderma pigmentosum | 1.48e-40 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.