FFCP PHASE1:Mm9::chr13:78322406..78322437,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=|HGNC=|MCL_coexpression_id=69|UniProt=|association_with_transcript=0bp_to_uc007rhb.1_5end|description=CAGE_peak_1_at_uc007rhb.1_5end|id=chr13:78322406..78322437,-|ontology_enrichment_celltype=CL:0000117!2.63e-15!23;CL:0000337!2.63e-15!23;CL:0000221!9.32e-15!44;CL:0000133!9.32e-15!44;CL:0002319!7.34e-14!43;CL:0000055!1.99e-10!50;CL:0000540!1.14e-09!33;CL:0000047!1.14e-09!33;CL:0000031!1.14e-09!33;CL:0000404!1.14e-09!33;CL:0002609!2.23e-07!6;CL:0002453!2.29e-07!8;CL:0000393!4.66e-07!39;CL:0000211!4.66e-07!39|ontology_enrichment_celltype_v019_2=CL:0000221,3.37e-23,44;CL:0000133,3.37e-23,44;CL:0000117,3.51e-22,23;CL:0000337,3.51e-22,23;CL:0002319,2.21e-21,43;CL:0000540,1.45e-16,33;CL:0000047,1.45e-16,33;CL:0000031,1.45e-16,33;CL:0000404,1.45e-16,33;CL:0002609,6.70e-15,6;CL:0000393,2.17e-13,39;CL:0000211,2.17e-13,39;CL:0002321,1.64e-12,70;CL:0000128,7.90e-10,6;CL:0000126,7.90e-10,6;CL:0000127,7.90e-10,6;CL:0002608,3.65e-08,3;CL:0002613,1.24e-07,3;CL:0002453,2.87e-07,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002020!1.67e-28!34;UBERON:0001017!1.07e-25!73;UBERON:0005743!1.07e-25!73;UBERON:0001049!6.57e-25!52;UBERON:0005068!6.57e-25!52;UBERON:0006241!6.57e-25!52;UBERON:0007135!6.57e-25!52;UBERON:0000073!1.74e-24!75;UBERON:0001016!1.74e-24!75;UBERON:0002791!2.51e-24!29;UBERON:0003528!2.51e-24!29;UBERON:0001893!2.51e-24!29;UBERON:0000955!2.95e-22!50;UBERON:0006238!2.95e-22!50;UBERON:0002616!9.07e-22!49;UBERON:0000033!4.42e-21!63;UBERON:0003080!1.50e-20!40;UBERON:0000956!2.32e-20!21;UBERON:0001869!2.32e-20!21;UBERON:0000203!2.32e-20!21;UBERON:0002780!4.26e-20!39;UBERON:0001890!4.26e-20!39;UBERON:0006240!4.26e-20!39;UBERON:0002346!5.38e-19!71;UBERON:0003075!5.38e-19!71;UBERON:0007284!5.38e-19!71;UBERON:0004121!2.21e-18!102;UBERON:0000924!2.21e-18!102;UBERON:0006601!2.21e-18!102;UBERON:0003056!2.73e-18!49;UBERON:0002619!1.58e-16!17;UBERON:0007811!3.32e-11!86;UBERON:0002021!1.20e-09!10;UBERON:0000411!1.20e-09!10;UBERON:0001950!1.20e-09!10;UBERON:0000153!4.98e-09!94;UBERON:0001954!2.49e-08!7;UBERON:0003022!2.49e-08!7;UBERON:0002421!2.49e-08!7;UBERON:0000349!2.49e-08!7;UBERON:0002600!2.49e-08!7|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.80e-48,34;UBERON:0003528,4.13e-42,29;UBERON:0002791,4.13e-42,29;UBERON:0001893,4.13e-42,29;UBERON:0000956,1.61e-37,21;UBERON:0001869,1.61e-37,21;UBERON:0000203,1.61e-37,21;UBERON:0001049,1.05e-31,52;UBERON:0005068,1.05e-31,52;UBERON:0006241,1.05e-31,52;UBERON:0007135,1.05e-31,52;UBERON:0000073,2.78e-30,54;UBERON:0001017,2.87e-30,73;UBERON:0002780,8.44e-30,39;UBERON:0001890,8.44e-30,39;UBERON:0006240,8.44e-30,39;UBERON:0001016,2.90e-29,75;UBERON:0003080,6.59e-29,40;UBERON:0002619,7.59e-29,17;UBERON:0002616,1.08e-26,46;UBERON:0000955,5.37e-26,47;UBERON:0006238,5.37e-26,47;UBERON:0010371,1.27e-24,73;UBERON:0002346,1.71e-24,64;UBERON:0003075,1.71e-24,64;UBERON:0007284,1.71e-24,64;UBERON:0004121,2.41e-23,95;UBERON:0000924,2.41e-23,95;UBERON:0006601,2.41e-23,95;UBERON:0003056,1.62e-22,49;UBERON:0010314,4.54e-18,92;UBERON:0001954,4.49e-17,7;UBERON:0003022,4.49e-17,7;UBERON:0002421,4.49e-17,7;UBERON:0000349,4.49e-17,7;UBERON:0002600,4.49e-17,7;UBERON:0002021,1.18e-13,10;UBERON:0000411,1.18e-13,10;UBERON:0001950,1.18e-13,10;UBERON:0004111,7.24e-13,122;UBERON:0000025,8.54e-11,114;UBERON:0000369,1.51e-07,5;UBERON:0002435,1.51e-07,5;UBERON:0000204,1.51e-07,5;UBERON:0010082,1.51e-07,5;UBERON:0011216,1.64e-07,194;UBERON:0001948,4.92e-07,5;UBERON:0002315,4.92e-07,5;UBERON:0002420,9.17e-07,8;UBERON:0007245,9.17e-07,8;UBERON:0010009,9.17e-07,8;UBERON:0010011,9.17e-07,8;UBERON:0000454,9.17e-07,8|phase1_expression=11.8510146857548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,2.39827672018491,6.15121311656521,2.72201858703997,1.39986421625363,5.75010257459886,0,0,0,0,0,0,0.809265843438391,1.5869729378161,1.90149421051854,0,0,0,0,0,0.299600110518405,0.384218305321555,4.04389488003063,5.94026128659439,4.41682418837902,1.71390590642282,1.98781686856452,2.44981598429908,4.40889166683887,10.1114066527102,0,0.127687338085188,0.614426133024974,2.50583946687368,3.01909223887952,2.08365348222704,0,1.12552522006336,0.15279824777681,1.47314292736834,1.99320353118744,0.745597783301202,0,0,0,0,0,0,0,0,0,0,0,0,20.703982707172,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0.230615497256059,0,0,0,0,0.144599356919912,0,0,0,0,0,0,0,0,0,0,0,0.299581278809645,0.915001205637253,1.88481528169297,1.39059456153821,0.767146371990992,0.83115217823824,0.648965052271031,0.203678727700633,0,0,0.210441855886474,0,0,0,0,0.0680364991513279,0,0.0937017245597288,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473489471170421,0,0,0,0,0,0,0,0,0,0,0,3.57492912559016,6.27718135513635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203651327845314,0,0.0701358198903186,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80275294993896,0.234423373184406,0.163934945376675,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0,0.178065603667255,0.325773918707152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177340233642274,0.178368817602071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.632671987162271,0,0,0,0.218362563746178,0.134864346384821,0.0826534557253359,0,0,0,0,0,0,0,0,0.168956125490778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183151624267265,0.428736758158132,1.00314420807073,2.82375921308533,1.84130094602871,2.86447756719698,1.71853182343688,2.05524755931193,3.0215755895588,2.70009000092722,0.900642406448441,2.71885445390523,0.51776031175182,1.24544817101012,4.78829848081237,0.341467211508268,0.486213434136588,0.419226325255965,0.367687016900028,0,0.412070114477788,0,0.252697211763798,0.25347929989024,0.188626341386076,0.280924522409647,0.512201219238954,0.516919220600519,0,0.231768651889711,0.192909220463705,0.412085900803307,0.147198920134397,0.685738504770831,0.532427418478012,0.476872379894642,0.872078499793971,0.470546902076653,0.423073039458382,0.548783918618318,0.526139422875686,0.679020569229309,1.12228454331548,0.237270036248348,0.591026894253381,0,0.464810523557898,0.192906610981141,1.24905288968973,0.233931608445408,0.214871054048298,0,0.220591419119515,0|short_description=p1@uc007rhb.1}} | ||
|EntrezGene= | |||
|HGNC= | |||
|MCL_coexpression_id=69 | |||
|UniProt= | |||
|association_with_transcript=0bp_to_uc007rhb.1_5end | |||
|description=CAGE_peak_1_at_uc007rhb.1_5end | |||
|id=chr13:78322406..78322437,- | |||
|ontology_enrichment_celltype=CL:0000117!2.63e-15!23;CL:0000337!2.63e-15!23;CL:0000221!9.32e-15!44;CL:0000133!9.32e-15!44;CL:0002319!7.34e-14!43;CL:0000055!1.99e-10!50;CL:0000540!1.14e-09!33;CL:0000047!1.14e-09!33;CL:0000031!1.14e-09!33;CL:0000404!1.14e-09!33;CL:0002609!2.23e-07!6;CL:0002453!2.29e-07!8;CL:0000393!4.66e-07!39;CL:0000211!4.66e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,3.37e-23,44;CL:0000133,3.37e-23,44;CL:0000117,3.51e-22,23;CL:0000337,3.51e-22,23;CL:0002319,2.21e-21,43;CL:0000540,1.45e-16,33;CL:0000047,1.45e-16,33;CL:0000031,1.45e-16,33;CL:0000404,1.45e-16,33;CL:0002609,6.70e-15,6;CL:0000393,2.17e-13,39;CL:0000211,2.17e-13,39;CL:0002321,1.64e-12,70;CL:0000128,7.90e-10,6;CL:0000126,7.90e-10,6;CL:0000127,7.90e-10,6;CL:0002608,3.65e-08,3;CL:0002613,1.24e-07,3;CL:0002453,2.87e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!1.67e-28!34;UBERON:0001017!1.07e-25!73;UBERON:0005743!1.07e-25!73;UBERON:0001049!6.57e-25!52;UBERON:0005068!6.57e-25!52;UBERON:0006241!6.57e-25!52;UBERON:0007135!6.57e-25!52;UBERON:0000073!1.74e-24!75;UBERON:0001016!1.74e-24!75;UBERON:0002791!2.51e-24!29;UBERON:0003528!2.51e-24!29;UBERON:0001893!2.51e-24!29;UBERON:0000955!2.95e-22!50;UBERON:0006238!2.95e-22!50;UBERON:0002616!9.07e-22!49;UBERON:0000033!4.42e-21!63;UBERON:0003080!1.50e-20!40;UBERON:0000956!2.32e-20!21;UBERON:0001869!2.32e-20!21;UBERON:0000203!2.32e-20!21;UBERON:0002780!4.26e-20!39;UBERON:0001890!4.26e-20!39;UBERON:0006240!4.26e-20!39;UBERON:0002346!5.38e-19!71;UBERON:0003075!5.38e-19!71;UBERON:0007284!5.38e-19!71;UBERON:0004121!2.21e-18!102;UBERON:0000924!2.21e-18!102;UBERON:0006601!2.21e-18!102;UBERON:0003056!2.73e-18!49;UBERON:0002619!1.58e-16!17;UBERON:0007811!3.32e-11!86;UBERON:0002021!1.20e-09!10;UBERON:0000411!1.20e-09!10;UBERON:0001950!1.20e-09!10;UBERON:0000153!4.98e-09!94;UBERON:0001954!2.49e-08!7;UBERON:0003022!2.49e-08!7;UBERON:0002421!2.49e-08!7;UBERON:0000349!2.49e-08!7;UBERON:0002600!2.49e-08!7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.80e-48,34;UBERON:0003528,4.13e-42,29;UBERON:0002791,4.13e-42,29;UBERON:0001893,4.13e-42,29;UBERON:0000956,1.61e-37,21;UBERON:0001869,1.61e-37,21;UBERON:0000203,1.61e-37,21;UBERON:0001049,1.05e-31,52;UBERON:0005068,1.05e-31,52;UBERON:0006241,1.05e-31,52;UBERON:0007135,1.05e-31,52;UBERON:0000073,2.78e-30,54;UBERON:0001017,2.87e-30,73;UBERON:0002780,8.44e-30,39;UBERON:0001890,8.44e-30,39;UBERON:0006240,8.44e-30,39;UBERON:0001016,2.90e-29,75;UBERON:0003080,6.59e-29,40;UBERON:0002619,7.59e-29,17;UBERON:0002616,1.08e-26,46;UBERON:0000955,5.37e-26,47;UBERON:0006238,5.37e-26,47;UBERON:0010371,1.27e-24,73;UBERON:0002346,1.71e-24,64;UBERON:0003075,1.71e-24,64;UBERON:0007284,1.71e-24,64;UBERON:0004121,2.41e-23,95;UBERON:0000924,2.41e-23,95;UBERON:0006601,2.41e-23,95;UBERON:0003056,1.62e-22,49;UBERON:0010314,4.54e-18,92;UBERON:0001954,4.49e-17,7;UBERON:0003022,4.49e-17,7;UBERON:0002421,4.49e-17,7;UBERON:0000349,4.49e-17,7;UBERON:0002600,4.49e-17,7;UBERON:0002021,1.18e-13,10;UBERON:0000411,1.18e-13,10;UBERON:0001950,1.18e-13,10;UBERON:0004111,7.24e-13,122;UBERON:0000025,8.54e-11,114;UBERON:0000369,1.51e-07,5;UBERON:0002435,1.51e-07,5;UBERON:0000204,1.51e-07,5;UBERON:0010082,1.51e-07,5;UBERON:0011216,1.64e-07,194;UBERON:0001948,4.92e-07,5;UBERON:0002315,4.92e-07,5;UBERON:0002420,9.17e-07,8;UBERON:0007245,9.17e-07,8;UBERON:0010009,9.17e-07,8;UBERON:0010011,9.17e-07,8;UBERON:0000454,9.17e-07,8 | |||
|phase1_expression=11.8510146857548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,2.39827672018491,6.15121311656521,2.72201858703997,1.39986421625363,5.75010257459886,0,0,0,0,0,0,0.809265843438391,1.5869729378161,1.90149421051854,0,0,0,0,0,0.299600110518405,0.384218305321555,4.04389488003063,5.94026128659439,4.41682418837902,1.71390590642282,1.98781686856452,2.44981598429908,4.40889166683887,10.1114066527102,0,0.127687338085188,0.614426133024974,2.50583946687368,3.01909223887952,2.08365348222704,0,1.12552522006336,0.15279824777681,1.47314292736834,1.99320353118744,0.745597783301202,0,0,0,0,0,0,0,0,0,0,0,0,20.703982707172,0,0,0,0,0,0,0,0,0,0.173485326766136,0,0.230615497256059,0,0,0,0,0.144599356919912,0,0,0,0,0,0,0,0,0,0,0,0.299581278809645,0.915001205637253,1.88481528169297,1.39059456153821,0.767146371990992,0.83115217823824,0.648965052271031,0.203678727700633,0,0,0.210441855886474,0,0,0,0,0.0680364991513279,0,0.0937017245597288,0.517406741478031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.473489471170421,0,0,0,0,0,0,0,0,0,0,0,3.57492912559016,6.27718135513635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203651327845314,0,0.0701358198903186,0.0632365371242573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179397413521912,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.80275294993896,0.234423373184406,0.163934945376675,0,0,0,0,0,0,0,0,0,0,0.321321316421807,0,0.178065603667255,0.325773918707152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.177340233642274,0.178368817602071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.632671987162271,0,0,0,0.218362563746178,0.134864346384821,0.0826534557253359,0,0,0,0,0,0,0,0,0.168956125490778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183151624267265,0.428736758158132,1.00314420807073,2.82375921308533,1.84130094602871,2.86447756719698,1.71853182343688,2.05524755931193,3.0215755895588,2.70009000092722,0.900642406448441,2.71885445390523,0.51776031175182,1.24544817101012,4.78829848081237,0.341467211508268,0.486213434136588,0.419226325255965,0.367687016900028,0,0.412070114477788,0,0.252697211763798,0.25347929989024,0.188626341386076,0.280924522409647,0.512201219238954,0.516919220600519,0,0.231768651889711,0.192909220463705,0.412085900803307,0.147198920134397,0.685738504770831,0.532427418478012,0.476872379894642,0.872078499793971,0.470546902076653,0.423073039458382,0.548783918618318,0.526139422875686,0.679020569229309,1.12228454331548,0.237270036248348,0.591026894253381,0,0.464810523557898,0.192906610981141,1.24905288968973,0.233931608445408,0.214871054048298,0,0.220591419119515,0 | |||
|short_description=p1@uc007rhb.1 | |||
}} |
Revision as of 01:08, 13 September 2013
Short description: | p1@uc007rhb.1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_uc007rhb.1_5end |
Coexpression cluster: | MCL_coexpression_mm9:69 |
Association with transcript: | 0bp_to_uc007rhb.1_5end |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 3.37e-23 | 44 |
neurectodermal cell | 3.37e-23 | 44 |
CNS neuron (sensu Vertebrata) | 3.51e-22 | 23 |
neuroblast (sensu Vertebrata) | 3.51e-22 | 23 |
neural cell | 2.21e-21 | 43 |
neuron | 1.45e-16 | 33 |
neuronal stem cell | 1.45e-16 | 33 |
neuroblast | 1.45e-16 | 33 |
electrically signaling cell | 1.45e-16 | 33 |
neuron of cerebral cortex | 6.70e-15 | 6 |
electrically responsive cell | 2.17e-13 | 39 |
electrically active cell | 2.17e-13 | 39 |
embryonic cell | 1.64e-12 | 70 |
oligodendrocyte | 7.90e-10 | 6 |
macroglial cell | 7.90e-10 | 6 |
astrocyte | 7.90e-10 | 6 |
hippocampal neuron | 3.65e-08 | 3 |
striatum neuron | 1.24e-07 | 3 |
oligodendrocyte precursor cell | 2.87e-07 | 8 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.