FFCP PHASE1:Mm9::chr12:92907224..92907234,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=2731|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr12:92907224..92907234,+|id=chr12:92907224..92907234,+|ontology_enrichment_celltype=CL:0000063!9.40e-20!66;CL:0002563!1.13e-16!9;CL:0002251!1.13e-16!9;CL:0000066!1.69e-13!25;CL:0000075!1.71e-12!7;CL:0000239!1.65e-11!6;CL:0000677!1.65e-11!6;CL:0000212!1.65e-11!6;CL:0000584!1.65e-11!6;CL:0000988!3.97e-11!32;CL:0002032!3.97e-11!32;CL:0000037!3.97e-11!32;CL:0000566!3.97e-11!32;CL:0000837!3.97e-11!32;CL:0000084!1.46e-10!11;CL:0000827!1.46e-10!11;CL:0000144!4.92e-10!121;CL:0000012!4.92e-10!121;CL:0000838!1.58e-09!12;CL:0002076!4.11e-09!15;CL:0000542!1.18e-08!13;CL:0000051!1.18e-08!13;CL:0000548!2.25e-08!115;CL:0000004!2.25e-08!115;CL:0000255!2.25e-08!115;CL:0000791!4.69e-08!9;CL:0000789!4.69e-08!9;CL:0002420!4.69e-08!9;CL:0002419!4.69e-08!9;CL:0000790!4.69e-08!9;CL:0002371!5.94e-08!118;CL:0000223!6.13e-08!20;CL:0002320!1.40e-07!46;CL:0000134!1.40e-07!46;CL:0002031!7.37e-07!25;CL:0000624!8.31e-07!8;CL:0002250!9.78e-07!3|ontology_enrichment_celltype_v019_2=CL:0002563,1.05e-38,9;CL:0002251,1.05e-38,9;CL:0000066,1.35e-25,25;CL:0000239,5.07e-23,6;CL:0000677,5.07e-23,6;CL:0000584,5.07e-23,6;CL:0002076,6.15e-23,15;CL:0000223,1.27e-21,20;CL:0000075,9.77e-20,7;CL:0002250,1.56e-17,3;CL:0000682,2.81e-08,3;CL:0000213,4.10e-07,1;CL:0002078,4.10e-07,1;CL:0000115,4.10e-07,1;CL:0002262,4.10e-07,1;CL:1000398,4.10e-07,1;CL:0000815,6.09e-07,1;CL:0000792,6.09e-07,1|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000485!1.03e-18!11;UBERON:0003350!1.13e-16!9;UBERON:0004808!1.13e-16!9;UBERON:0001277!1.13e-16!9;UBERON:0001242!7.51e-11!13;UBERON:0000060!7.51e-11!13;UBERON:0001262!7.51e-11!13;UBERON:0004786!7.51e-11!13;UBERON:0000344!4.11e-09!15;UBERON:0002384!1.40e-07!46;UBERON:0003929!7.91e-07!55|ontology_enrichment_uberon_v019_2=UBERON:0003350,1.05e-38,9;UBERON:0004808,1.05e-38,9;UBERON:0001277,1.05e-38,9;UBERON:0000485,1.52e-31,11;UBERON:0001242,1.40e-26,13;UBERON:0001262,1.40e-26,13;UBERON:0004786,1.40e-26,13;UBERON:0000344,6.15e-23,15;UBERON:0004923,4.91e-14,24;UBERON:0000160,1.13e-10,31;UBERON:0003929,3.60e-07,55;UBERON:0002394,4.10e-07,1;UBERON:0001281,4.10e-07,1;UBERON:0000353,4.10e-07,1;UBERON:0003497,4.10e-07,1;UBERON:0003909,4.10e-07,1;UBERON:0003928,4.10e-07,1;UBERON:0003835,4.10e-07,1;UBERON:0003513,4.10e-07,1;UBERON:0001280,4.10e-07,1;UBERON:0004647,4.10e-07,1;UBERON:0002294,4.10e-07,1;UBERON:0001173,4.10e-07,1;UBERON:0004912,4.10e-07,1;UBERON:0005171,4.10e-07,1;UBERON:0005409,9.93e-07,47|phase1_expression=0.160148847104794,0.697950815278722,4.54999239389536,1.51232105653415,1.50268718983904,2.85394762250213,4.20502753071946,2.96983643915625,0.140788722151667,0.234064526321993,0.34243593645101,0.239316476986009,0,0.174840804837995,0,0.202475267389826,0,0.315462165358238,0,0.42438965179803,0.17008658030214,0.198581902401771,0.522399578277871,0,0,2.29692785646008,0.430761996159075,2.37018355954478,0,0,0,0,0,0,6.64358725427932,1.32987716286794,6.12508068787107,0,0,0,15.2940186888064,0.683045484958446,0,0,0,0,0,0,0,0,0,0,0,0,0.336093799142464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075726193333184,0,5.50742528533188,0,0,0,0,0,0.140444420131752,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.838705871541442,0.599902730993408,0.762421362438388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150704817835715,0,0,0,0,0,0,0,0,0,0,0,0,0,2.05878325691772,0.284163499395593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0.184753190166605,0,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16488625294148,0.161464426695906,0.0603129249281559,0,0,0,0,0,0,0,0,0,0,0.679913719975421,1.39951452323658,1.38199973804424,0,0,0,0,0,0,0,0,0,0,0,0.56369293868419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39736270956253,0.240390899039938,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941093804153306,0,0,0,0.135804113845862,0,0,0,0,0,0,0,0.233931608445408,0,0,0,0|short_description=p@chr12:92907224..92907234,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=2731 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr12:92907224..92907234,+ | |||
|id=chr12:92907224..92907234,+ | |||
|ontology_enrichment_celltype=CL:0000063!9.40e-20!66;CL:0002563!1.13e-16!9;CL:0002251!1.13e-16!9;CL:0000066!1.69e-13!25;CL:0000075!1.71e-12!7;CL:0000239!1.65e-11!6;CL:0000677!1.65e-11!6;CL:0000212!1.65e-11!6;CL:0000584!1.65e-11!6;CL:0000988!3.97e-11!32;CL:0002032!3.97e-11!32;CL:0000037!3.97e-11!32;CL:0000566!3.97e-11!32;CL:0000837!3.97e-11!32;CL:0000084!1.46e-10!11;CL:0000827!1.46e-10!11;CL:0000144!4.92e-10!121;CL:0000012!4.92e-10!121;CL:0000838!1.58e-09!12;CL:0002076!4.11e-09!15;CL:0000542!1.18e-08!13;CL:0000051!1.18e-08!13;CL:0000548!2.25e-08!115;CL:0000004!2.25e-08!115;CL:0000255!2.25e-08!115;CL:0000791!4.69e-08!9;CL:0000789!4.69e-08!9;CL:0002420!4.69e-08!9;CL:0002419!4.69e-08!9;CL:0000790!4.69e-08!9;CL:0002371!5.94e-08!118;CL:0000223!6.13e-08!20;CL:0002320!1.40e-07!46;CL:0000134!1.40e-07!46;CL:0002031!7.37e-07!25;CL:0000624!8.31e-07!8;CL:0002250!9.78e-07!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.05e-38,9;CL:0002251,1.05e-38,9;CL:0000066,1.35e-25,25;CL:0000239,5.07e-23,6;CL:0000677,5.07e-23,6;CL:0000584,5.07e-23,6;CL:0002076,6.15e-23,15;CL:0000223,1.27e-21,20;CL:0000075,9.77e-20,7;CL:0002250,1.56e-17,3;CL:0000682,2.81e-08,3;CL:0000213,4.10e-07,1;CL:0002078,4.10e-07,1;CL:0000115,4.10e-07,1;CL:0002262,4.10e-07,1;CL:1000398,4.10e-07,1;CL:0000815,6.09e-07,1;CL:0000792,6.09e-07,1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000485!1.03e-18!11;UBERON:0003350!1.13e-16!9;UBERON:0004808!1.13e-16!9;UBERON:0001277!1.13e-16!9;UBERON:0001242!7.51e-11!13;UBERON:0000060!7.51e-11!13;UBERON:0001262!7.51e-11!13;UBERON:0004786!7.51e-11!13;UBERON:0000344!4.11e-09!15;UBERON:0002384!1.40e-07!46;UBERON:0003929!7.91e-07!55 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003350,1.05e-38,9;UBERON:0004808,1.05e-38,9;UBERON:0001277,1.05e-38,9;UBERON:0000485,1.52e-31,11;UBERON:0001242,1.40e-26,13;UBERON:0001262,1.40e-26,13;UBERON:0004786,1.40e-26,13;UBERON:0000344,6.15e-23,15;UBERON:0004923,4.91e-14,24;UBERON:0000160,1.13e-10,31;UBERON:0003929,3.60e-07,55;UBERON:0002394,4.10e-07,1;UBERON:0001281,4.10e-07,1;UBERON:0000353,4.10e-07,1;UBERON:0003497,4.10e-07,1;UBERON:0003909,4.10e-07,1;UBERON:0003928,4.10e-07,1;UBERON:0003835,4.10e-07,1;UBERON:0003513,4.10e-07,1;UBERON:0001280,4.10e-07,1;UBERON:0004647,4.10e-07,1;UBERON:0002294,4.10e-07,1;UBERON:0001173,4.10e-07,1;UBERON:0004912,4.10e-07,1;UBERON:0005171,4.10e-07,1;UBERON:0005409,9.93e-07,47 | |||
|phase1_expression=0.160148847104794,0.697950815278722,4.54999239389536,1.51232105653415,1.50268718983904,2.85394762250213,4.20502753071946,2.96983643915625,0.140788722151667,0.234064526321993,0.34243593645101,0.239316476986009,0,0.174840804837995,0,0.202475267389826,0,0.315462165358238,0,0.42438965179803,0.17008658030214,0.198581902401771,0.522399578277871,0,0,2.29692785646008,0.430761996159075,2.37018355954478,0,0,0,0,0,0,6.64358725427932,1.32987716286794,6.12508068787107,0,0,0,15.2940186888064,0.683045484958446,0,0,0,0,0,0,0,0,0,0,0,0,0.336093799142464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.075726193333184,0,5.50742528533188,0,0,0,0,0,0.140444420131752,0,0,0,0.14084341977668,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.838705871541442,0.599902730993408,0.762421362438388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150704817835715,0,0,0,0,0,0,0,0,0,0,0,0,0,2.05878325691772,0.284163499395593,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0,0.184753190166605,0,0,0.169745085775188,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16488625294148,0.161464426695906,0.0603129249281559,0,0,0,0,0,0,0,0,0,0,0.679913719975421,1.39951452323658,1.38199973804424,0,0,0,0,0,0,0,0,0,0,0,0.56369293868419,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.39736270956253,0.240390899039938,0,0,0.0762068066549998,0,0,0,0,0,0,0,0,0,0,0,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183843508450014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941093804153306,0,0,0,0.135804113845862,0,0,0,0,0,0,0,0.233931608445408,0,0,0,0 | |||
|short_description=p@chr12:92907224..92907234,+ | |||
}} |
Revision as of 23:37, 12 September 2013
Short description: | p@chr12:92907224..92907234, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:92907224..92907234, + |
Coexpression cluster: | MCL_coexpression_mm9:2731 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.05e-38 | 9 |
epithelial cell of alimentary canal | 1.05e-38 | 9 |
epithelial cell | 1.35e-25 | 25 |
brush border epithelial cell | 5.07e-23 | 6 |
gut absorptive cell | 5.07e-23 | 6 |
enterocyte | 5.07e-23 | 6 |
endo-epithelial cell | 6.15e-23 | 15 |
endodermal cell | 1.27e-21 | 20 |
columnar/cuboidal epithelial cell | 9.77e-20 | 7 |
intestinal crypt stem cell | 1.56e-17 | 3 |
M cell of gut | 2.81e-08 | 3 |
lining cell | 4.10e-07 | 1 |
meso-epithelial cell | 4.10e-07 | 1 |
endothelial cell | 4.10e-07 | 1 |
endothelial cell of sinusoid | 4.10e-07 | 1 |
endothelial cell of hepatic sinusoid | 4.10e-07 | 1 |
regulatory T cell | 6.09e-07 | 1 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 6.09e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
epithelium of mucosa | 1.05e-38 | 9 |
gastrointestinal system epithelium | 1.05e-38 | 9 |
intestinal epithelium | 1.05e-38 | 9 |
simple columnar epithelium | 1.52e-31 | 11 |
intestinal mucosa | 1.40e-26 | 13 |
wall of intestine | 1.40e-26 | 13 |
gastrointestinal system mucosa | 1.40e-26 | 13 |
mucosa | 6.15e-23 | 15 |
organ component layer | 4.91e-14 | 24 |
intestine | 1.13e-10 | 31 |
gut epithelium | 3.60e-07 | 55 |
bile duct | 4.10e-07 | 1 |
hepatic sinusoid | 4.10e-07 | 1 |
parenchyma | 4.10e-07 | 1 |
abdomen blood vessel | 4.10e-07 | 1 |
sinusoid | 4.10e-07 | 1 |
digestive system duct | 4.10e-07 | 1 |
abdominal segment blood vessel | 4.10e-07 | 1 |
trunk blood vessel | 4.10e-07 | 1 |
liver parenchyma | 4.10e-07 | 1 |
liver lobule | 4.10e-07 | 1 |
biliary system | 4.10e-07 | 1 |
biliary tree | 4.10e-07 | 1 |
biliary bud | 4.10e-07 | 1 |
hepatic duct | 4.10e-07 | 1 |
gastrointestinal system | 9.93e-07 | 47 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.