FFCP PHASE1:Mm9::chr12:60232412..60232456,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=217615|HGNC=|MCL_coexpression_id=1066|UniProt=E9PY90|association_with_transcript=0bp_to_ENSMUST00000170992,NM_001165253,uc007nqh.1,uc007nqi.2_5end|description=CAGE_peak_2_at_Ctage5_5end|id=chr12:60232412..60232456,+|ontology_enrichment_celltype=CL:0000988!2.57e-11!32;CL:0002032!2.57e-11!32;CL:0000037!2.57e-11!32;CL:0000566!2.57e-11!32;CL:0000837!2.57e-11!32;CL:0002031!9.63e-09!25;CL:0000838!1.40e-08!12;CL:0000084!5.77e-08!11;CL:0000827!5.77e-08!11;CL:0000542!8.48e-08!13;CL:0000051!8.48e-08!13;CL:0000791!1.47e-07!9;CL:0000789!1.47e-07!9;CL:0002420!1.47e-07!9;CL:0002419!1.47e-07!9;CL:0000790!1.47e-07!9;CL:0000624!6.68e-07!8|ontology_enrichment_celltype_v019_2=CL:0000988,2.57e-11,32;CL:0002032,2.57e-11,32;CL:0000037,2.57e-11,32;CL:0000837,2.57e-11,32;CL:0002031,9.63e-09,25;CL:0000838,1.40e-08,12;CL:0000084,5.77e-08,11;CL:0000827,5.77e-08,11;CL:0000542,8.48e-08,13;CL:0000051,8.48e-08,13;CL:0000791,1.47e-07,9;CL:0000789,1.47e-07,9;CL:0002420,1.47e-07,9;CL:0002419,1.47e-07,9;CL:0000790,1.47e-07,9;CL:0000624,6.68e-07,8|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002193!6.84e-15!48;UBERON:0002390!1.49e-13!45;UBERON:0003061!1.49e-13!45;UBERON:0004177!2.90e-11!29;UBERON:0003408!8.40e-11!24;UBERON:0002370!1.50e-10!23;UBERON:0000974!1.50e-10!23;UBERON:0004807!1.50e-10!23;UBERON:0005058!1.50e-10!23;UBERON:0003351!1.50e-10!23;UBERON:0009113!1.50e-10!23;UBERON:0003295!1.50e-10!23;UBERON:0009722!1.50e-10!23;UBERON:0005562!1.50e-10!23;UBERON:0007690!1.50e-10!23;UBERON:0006562!1.49e-09!24;UBERON:0001557!1.49e-09!24;UBERON:0001042!1.49e-09!24;UBERON:0008814!1.49e-09!24;UBERON:0009145!1.49e-09!24;UBERON:0000072!2.42e-09!27;UBERON:0002405!5.45e-08!70;UBERON:0001004!6.37e-08!42;UBERON:0000065!1.16e-07!41;UBERON:0000064!6.28e-07!99|ontology_enrichment_uberon_v019_2=UBERON:0002193,6.84e-15,48;UBERON:0002405,6.84e-15,48;UBERON:0002390,1.49e-13,45;UBERON:0003061,1.49e-13,45;UBERON:0000077,3.32e-12,35;UBERON:0004177,2.90e-11,29;UBERON:0005057,2.90e-11,29;UBERON:0003408,8.40e-11,24;UBERON:0002370,1.50e-10,23;UBERON:0000974,1.50e-10,23;UBERON:0004807,1.50e-10,23;UBERON:0005058,1.50e-10,23;UBERON:0003351,1.50e-10,23;UBERON:0009113,1.50e-10,23;UBERON:0003295,1.50e-10,23;UBERON:0009722,1.50e-10,23;UBERON:0005562,1.50e-10,23;UBERON:0007690,1.50e-10,23;UBERON:0006562,1.49e-09,24;UBERON:0001557,1.49e-09,24;UBERON:0001042,1.49e-09,24;UBERON:0008814,1.49e-09,24;UBERON:0009145,1.49e-09,24;UBERON:0000072,2.42e-09,27;UBERON:0001004,6.37e-08,42;UBERON:0000065,1.16e-07,41|phase1_expression=11.2104192973356,18.1467211972468,15.9249733786338,9.37639055051173,10.5188103288733,23.1673395238408,27.099066309081,62.4956885457229,73.49171296317,95.2642622130514,94.1698825240277,93.8918311375109,63.1730693446149,80.0770886158016,32.3116468961193,32.1935675149823,26.5833513688696,47.3193248037357,45.3848775234995,42.014575528005,15.0526623567394,26.6099749218373,18.8063848180033,23.998863419011,22.940928106717,15.5042630311055,19.8150518233174,18.5305260109865,14.0617330397717,21.926621289114,16.8515188098032,24.131165591466,15.9916844771988,0,14.731432607315,16.7896991812077,17.5585646385637,28.4601508901097,33.5974198145234,37.1701858221397,35.8821207698919,25.9557284284209,36.4132764773365,11.2048167998264,8.51566222243922,7.89251034295231,6.25913075478431,4.14247797122848,5.93152693383074,9.13820525649132,7.97922603264566,5.75010257459886,45.6368688477043,66.7333170650437,66.2104784310654,14.663787854049,15.7593391966316,8.76642556871652,9.5088736604011,7.40587370980846,6.97214543856797,6.09920157724438,4.4464739805557,19.7977937801908,13.8441290759376,6.3943210345149,3.59520132622086,4.2264013585371,13.5833392124106,9.72042755988173,12.4091727197315,9.71213346972932,11.9269012113871,11.5141351262057,9.68039257284187,12.8690630125403,11.0115880999389,17.1101033034152,13.8245879930619,9.62769900430415,9.5147149346506,13.5437476344758,14.2383329490704,9.00420176050688,13.7518422999129,12.6690291753677,12.5287079103211,10.9975673036927,27.8672391466117,19.4218909474439,21.1601076752225,6.0229671388697,16.319312008986,9.17495425784289,7.14754059192436,8.96053774194671,15.5893306346245,12.2709832256202,7.01422212427746,10.9535268098205,11.4083170019111,6.41632387071589,56.0571527354621,42.6640021891999,14.9378818297738,19.0019899106324,15.1657333504435,17.127581957859,53.8590797986117,18.2583831049734,13.3583701609925,14.0054120023585,13.1450833435953,13.4143150091834,17.4031286560843,13.3206586809456,11.8653584512499,16.33972733195,13.2691582792481,12.2942805960031,16.1214308476087,14.0613823409214,13.0474232852686,16.3957246326466,15.9179497178226,14.8165092020983,33.068974363634,36.5940665905979,30.4968544975355,11.9832511523858,17.3850229071078,13.5706700281894,21.0327427432655,21.4800984157478,14.1295870300501,22.064811777215,14.5630290305952,19.1586734739543,23.5032165343317,18.5188833180097,11.7108398666433,11.7250073261071,10.2635413989049,12.8099095160358,14.3557013209302,12.68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| ||
|EntrezGene=217615 | |||
|HGNC= | |||
|MCL_coexpression_id=1066 | |||
|UniProt=E9PY90 | |||
|association_with_transcript=0bp_to_ENSMUST00000170992,NM_001165253,uc007nqh.1,uc007nqi.2_5end | |||
|description=CAGE_peak_2_at_Ctage5_5end | |||
|id=chr12:60232412..60232456,+ | |||
|ontology_enrichment_celltype=CL:0000988!2.57e-11!32;CL:0002032!2.57e-11!32;CL:0000037!2.57e-11!32;CL:0000566!2.57e-11!32;CL:0000837!2.57e-11!32;CL:0002031!9.63e-09!25;CL:0000838!1.40e-08!12;CL:0000084!5.77e-08!11;CL:0000827!5.77e-08!11;CL:0000542!8.48e-08!13;CL:0000051!8.48e-08!13;CL:0000791!1.47e-07!9;CL:0000789!1.47e-07!9;CL:0002420!1.47e-07!9;CL:0002419!1.47e-07!9;CL:0000790!1.47e-07!9;CL:0000624!6.68e-07!8 | |||
|ontology_enrichment_celltype_v019_2=CL:0000988,2.57e-11,32;CL:0002032,2.57e-11,32;CL:0000037,2.57e-11,32;CL:0000837,2.57e-11,32;CL:0002031,9.63e-09,25;CL:0000838,1.40e-08,12;CL:0000084,5.77e-08,11;CL:0000827,5.77e-08,11;CL:0000542,8.48e-08,13;CL:0000051,8.48e-08,13;CL:0000791,1.47e-07,9;CL:0000789,1.47e-07,9;CL:0002420,1.47e-07,9;CL:0002419,1.47e-07,9;CL:0000790,1.47e-07,9;CL:0000624,6.68e-07,8 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!6.84e-15!48;UBERON:0002390!1.49e-13!45;UBERON:0003061!1.49e-13!45;UBERON:0004177!2.90e-11!29;UBERON:0003408!8.40e-11!24;UBERON:0002370!1.50e-10!23;UBERON:0000974!1.50e-10!23;UBERON:0004807!1.50e-10!23;UBERON:0005058!1.50e-10!23;UBERON:0003351!1.50e-10!23;UBERON:0009113!1.50e-10!23;UBERON:0003295!1.50e-10!23;UBERON:0009722!1.50e-10!23;UBERON:0005562!1.50e-10!23;UBERON:0007690!1.50e-10!23;UBERON:0006562!1.49e-09!24;UBERON:0001557!1.49e-09!24;UBERON:0001042!1.49e-09!24;UBERON:0008814!1.49e-09!24;UBERON:0009145!1.49e-09!24;UBERON:0000072!2.42e-09!27;UBERON:0002405!5.45e-08!70;UBERON:0001004!6.37e-08!42;UBERON:0000065!1.16e-07!41;UBERON:0000064!6.28e-07!99 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,6.84e-15,48;UBERON:0002405,6.84e-15,48;UBERON:0002390,1.49e-13,45;UBERON:0003061,1.49e-13,45;UBERON:0000077,3.32e-12,35;UBERON:0004177,2.90e-11,29;UBERON:0005057,2.90e-11,29;UBERON:0003408,8.40e-11,24;UBERON:0002370,1.50e-10,23;UBERON:0000974,1.50e-10,23;UBERON:0004807,1.50e-10,23;UBERON:0005058,1.50e-10,23;UBERON:0003351,1.50e-10,23;UBERON:0009113,1.50e-10,23;UBERON:0003295,1.50e-10,23;UBERON:0009722,1.50e-10,23;UBERON:0005562,1.50e-10,23;UBERON:0007690,1.50e-10,23;UBERON:0006562,1.49e-09,24;UBERON:0001557,1.49e-09,24;UBERON:0001042,1.49e-09,24;UBERON:0008814,1.49e-09,24;UBERON:0009145,1.49e-09,24;UBERON:0000072,2.42e-09,27;UBERON:0001004,6.37e-08,42;UBERON:0000065,1.16e-07,41 | |||
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| |||
|short_description=p2@Ctage5 | |||
}} |
Revision as of 23:01, 12 September 2013
Short description: | p2@Ctage5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Ctage5_5end |
Coexpression cluster: | MCL_coexpression_mm9:1066 |
Association with transcript: | 0bp_to_ENSMUST00000170992, NM_001165253, uc007nqh.1, uc007nqi.2_5end |
EntrezGene: | Ctage5 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic cell | 2.57e-11 | 32 |
hematopoietic oligopotent progenitor cell | 2.57e-11 | 32 |
hematopoietic stem cell | 2.57e-11 | 32 |
hematopoietic multipotent progenitor cell | 2.57e-11 | 32 |
hematopoietic lineage restricted progenitor cell | 9.63e-09 | 25 |
lymphoid lineage restricted progenitor cell | 1.40e-08 | 12 |
T cell | 5.77e-08 | 11 |
pro-T cell | 5.77e-08 | 11 |
lymphocyte | 8.48e-08 | 13 |
common lymphoid progenitor | 8.48e-08 | 13 |
mature alpha-beta T cell | 1.47e-07 | 9 |
alpha-beta T cell | 1.47e-07 | 9 |
immature T cell | 1.47e-07 | 9 |
mature T cell | 1.47e-07 | 9 |
immature alpha-beta T cell | 1.47e-07 | 9 |
CD4-positive, alpha-beta T cell | 6.68e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 6.84e-15 | 48 |
immune system | 6.84e-15 | 48 |
hematopoietic system | 1.49e-13 | 45 |
blood island | 1.49e-13 | 45 |
mixed endoderm/mesoderm-derived structure | 3.32e-12 | 35 |
hemopoietic organ | 2.90e-11 | 29 |
immune organ | 2.90e-11 | 29 |
gland of gut | 8.40e-11 | 24 |
thymus | 1.50e-10 | 23 |
neck | 1.50e-10 | 23 |
respiratory system epithelium | 1.50e-10 | 23 |
hemolymphoid system gland | 1.50e-10 | 23 |
pharyngeal epithelium | 1.50e-10 | 23 |
thymic region | 1.50e-10 | 23 |
pharyngeal gland | 1.50e-10 | 23 |
entire pharyngeal arch endoderm | 1.50e-10 | 23 |
thymus primordium | 1.50e-10 | 23 |
early pharyngeal endoderm | 1.50e-10 | 23 |
pharynx | 1.49e-09 | 24 |
upper respiratory tract | 1.49e-09 | 24 |
chordate pharynx | 1.49e-09 | 24 |
pharyngeal arch system | 1.49e-09 | 24 |
pharyngeal region of foregut | 1.49e-09 | 24 |
segment of respiratory tract | 2.42e-09 | 27 |
respiratory system | 6.37e-08 | 42 |
respiratory tract | 1.16e-07 | 41 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.