FFCP PHASE1:Mm9::chr11:96143545..96143556,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=15416|HGNC=|MCL_coexpression_id=249|UniProt=A2A9Z7|association_with_transcript=-313bp_to_ENSMUST00000125410_5end|description=CAGE_peak_6_at_Hoxb8_5end|id=chr11:96143545..96143556,+|ontology_enrichment_celltype=CL:0002612!8.14e-09!3|ontology_enrichment_celltype_v019_2=CL:0002612,1.66e-44,3;CL:0002611,2.55e-29,2;CL:0000117,3.15e-16,23;CL:0000337,3.15e-16,23;CL:0000540,1.86e-11,33;CL:0000047,1.86e-11,33;CL:0000031,1.86e-11,33;CL:0000404,1.86e-11,33;CL:0000393,9.26e-10,39;CL:0000211,9.26e-10,39;CL:0002319,6.89e-09,43;CL:0000221,1.08e-08,44;CL:0000133,1.08e-08,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000489!5.43e-30!21;UBERON:0002113!5.49e-18!14;UBERON:0003918!5.49e-18!14;UBERON:0005095!5.49e-18!14;UBERON:0007687!5.49e-18!14;UBERON:0002240!9.71e-16!6;UBERON:0005174!9.71e-16!6;UBERON:0001137!9.71e-16!6;UBERON:0006554!1.93e-15!16;UBERON:0001008!2.16e-14!17;UBERON:0001948!1.88e-13!5;UBERON:0002315!1.88e-13!5;UBERON:0003076!1.66e-12!12;UBERON:0003057!1.66e-12!12;UBERON:0003103!1.76e-12!43;UBERON:0002257!8.14e-09!3;UBERON:0005177!1.54e-07!85;UBERON:0005172!3.36e-07!49;UBERON:0005173!3.36e-07!49;UBERON:0002417!3.36e-07!49;UBERON:0000916!3.36e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0001948,2.95e-72,5;UBERON:0002315,2.95e-72,5;UBERON:0002240,2.34e-60,6;UBERON:0005174,2.34e-60,6;UBERON:0001137,2.34e-60,6;UBERON:0002257,1.66e-44,3;UBERON:0003076,1.48e-30,12;UBERON:0003057,1.48e-30,12;UBERON:0002256,2.55e-29,2;UBERON:0000489,3.00e-25,21;UBERON:0003103,1.38e-12,43;UBERON:0002020,3.91e-11,34;UBERON:0001049,2.07e-07,52;UBERON:0005068,2.07e-07,52;UBERON:0006241,2.07e-07,52;UBERON:0007135,2.07e-07,52;UBERON:0000073,3.79e-07,54|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99955689082663,1.98781686856452,0,0,0,0,0,0,0,0,0,0,0,0,2.65165726926301,3.70166370077668,2.23679334990361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.29688427812965,0,0,0.230615497256059,0.150722640552623,0,0.251333182659351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203678727700633,0,2.52722758433675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379335801906163,0.571242563048644,0,0.203651327845314,0.775809948670503,0.701358198903186,0.316182685621286,0.147610147979602,0.156998727841375,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0.35163505977661,0,0,0.315508219416257,0,0,0,0,0,0,0,0,0,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.65954501176592,0,0.180938774784468,0,0,0,0.927126510052548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134864346384821,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,0.399024873401031,0.341467211508268,0,0.209613162627982,0,0,0,0,0,0,0,0,0,0,0,0.115884325944855,0,0,0,0,0,0,0,0,0.0846146078916765,0.182927972872773,0,0,0,0.237270036248348,0.0985044823755635,0,0,0.578719832943424,0.499621155875892,0,0,0,0,0|short_description=p6@Hoxb8}} | ||
|EntrezGene=15416 | |||
|HGNC= | |||
|MCL_coexpression_id=249 | |||
|UniProt=A2A9Z7 | |||
|association_with_transcript=-313bp_to_ENSMUST00000125410_5end | |||
|description=CAGE_peak_6_at_Hoxb8_5end | |||
|id=chr11:96143545..96143556,+ | |||
|ontology_enrichment_celltype=CL:0002612!8.14e-09!3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002612,1.66e-44,3;CL:0002611,2.55e-29,2;CL:0000117,3.15e-16,23;CL:0000337,3.15e-16,23;CL:0000540,1.86e-11,33;CL:0000047,1.86e-11,33;CL:0000031,1.86e-11,33;CL:0000404,1.86e-11,33;CL:0000393,9.26e-10,39;CL:0000211,9.26e-10,39;CL:0002319,6.89e-09,43;CL:0000221,1.08e-08,44;CL:0000133,1.08e-08,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000489!5.43e-30!21;UBERON:0002113!5.49e-18!14;UBERON:0003918!5.49e-18!14;UBERON:0005095!5.49e-18!14;UBERON:0007687!5.49e-18!14;UBERON:0002240!9.71e-16!6;UBERON:0005174!9.71e-16!6;UBERON:0001137!9.71e-16!6;UBERON:0006554!1.93e-15!16;UBERON:0001008!2.16e-14!17;UBERON:0001948!1.88e-13!5;UBERON:0002315!1.88e-13!5;UBERON:0003076!1.66e-12!12;UBERON:0003057!1.66e-12!12;UBERON:0003103!1.76e-12!43;UBERON:0002257!8.14e-09!3;UBERON:0005177!1.54e-07!85;UBERON:0005172!3.36e-07!49;UBERON:0005173!3.36e-07!49;UBERON:0002417!3.36e-07!49;UBERON:0000916!3.36e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001948,2.95e-72,5;UBERON:0002315,2.95e-72,5;UBERON:0002240,2.34e-60,6;UBERON:0005174,2.34e-60,6;UBERON:0001137,2.34e-60,6;UBERON:0002257,1.66e-44,3;UBERON:0003076,1.48e-30,12;UBERON:0003057,1.48e-30,12;UBERON:0002256,2.55e-29,2;UBERON:0000489,3.00e-25,21;UBERON:0003103,1.38e-12,43;UBERON:0002020,3.91e-11,34;UBERON:0001049,2.07e-07,52;UBERON:0005068,2.07e-07,52;UBERON:0006241,2.07e-07,52;UBERON:0007135,2.07e-07,52;UBERON:0000073,3.79e-07,54 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.99955689082663,1.98781686856452,0,0,0,0,0,0,0,0,0,0,0,0,2.65165726926301,3.70166370077668,2.23679334990361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.29688427812965,0,0,0.230615497256059,0.150722640552623,0,0.251333182659351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203678727700633,0,2.52722758433675,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.379335801906163,0.571242563048644,0,0.203651327845314,0.775809948670503,0.701358198903186,0.316182685621286,0.147610147979602,0.156998727841375,0.123397163921801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160550589987792,0.35163505977661,0,0,0.315508219416257,0,0,0,0,0,0,0,0,0,0,0,0,0.164970122972535,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.65954501176592,0,0.180938774784468,0,0,0,0.927126510052548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134864346384821,0.0826534557253359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,0.399024873401031,0.341467211508268,0,0.209613162627982,0,0,0,0,0,0,0,0,0,0,0,0.115884325944855,0,0,0,0,0,0,0,0,0.0846146078916765,0.182927972872773,0,0,0,0.237270036248348,0.0985044823755635,0,0,0.578719832943424,0.499621155875892,0,0,0,0,0 | |||
|short_description=p6@Hoxb8 | |||
}} |
Revision as of 21:38, 12 September 2013
Short description: | p6@Hoxb8 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Hoxb8_5end |
Coexpression cluster: | MCL_coexpression_mm9:249 |
Association with transcript: | -313bp_to_ENSMUST00000125410_5end |
EntrezGene: | Hoxb8 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron of the ventral spinal cord | 1.66e-44 | 3 |
neuron of the dorsal spinal cord | 2.55e-29 | 2 |
CNS neuron (sensu Vertebrata) | 3.15e-16 | 23 |
neuroblast (sensu Vertebrata) | 3.15e-16 | 23 |
neuron | 1.86e-11 | 33 |
neuronal stem cell | 1.86e-11 | 33 |
neuroblast | 1.86e-11 | 33 |
electrically signaling cell | 1.86e-11 | 33 |
electrically responsive cell | 9.26e-10 | 39 |
electrically active cell | 9.26e-10 | 39 |
neural cell | 6.89e-09 | 43 |
ectodermal cell | 1.08e-08 | 44 |
neurectodermal cell | 1.08e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
regional part of spinal cord | 2.95e-72 | 5 |
gray matter of spinal cord | 2.95e-72 | 5 |
spinal cord | 2.34e-60 | 6 |
dorsal region element | 2.34e-60 | 6 |
dorsum | 2.34e-60 | 6 |
ventral horn of spinal cord | 1.66e-44 | 3 |
posterior neural tube | 1.48e-30 | 12 |
chordal neural plate | 1.48e-30 | 12 |
dorsal horn of spinal cord | 2.55e-29 | 2 |
cavitated compound organ | 3.00e-25 | 21 |
compound organ | 1.38e-12 | 43 |
gray matter | 3.91e-11 | 34 |
neural tube | 2.07e-07 | 52 |
neural rod | 2.07e-07 | 52 |
future spinal cord | 2.07e-07 | 52 |
neural keel | 2.07e-07 | 52 |
regional part of nervous system | 3.79e-07 | 54 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.