FFCP PHASE1:Hg19::chr2:72375547..72375559,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=56603|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=20581|TSSclassifier=N|UniProt=Q9NR63|association_with_transcript=-380bp_to_ENST00000001146_5end|coexpression_cluster_id=C2704|description=CAGE_peak_8_at_CYP26B1_5end|id=chr2:72375547..72375559,-|ontology_enrichment_celltype=CL:0002541!1.49e-08!3|ontology_enrichment_celltype_v019=CL:0002537;2.71e-30;5!CL:0000349;3.12e-14;19!CL:0000746;6.14e-07;3!CL:0002541;8.86e-07;3!CL:0002615;8.86e-07;3|ontology_enrichment_celltype_v019_2=CL:0002537,1.42e-30,5;CL:0000349,2.45e-14,19;CL:0000746,6.14e-07,3;CL:0000513,6.14e-07,3;CL:0002541,8.62e-07,3|ontology_enrichment_development_v019=CL:0000513;6.14e-07;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:171;1.11e-15;10!DOID:3193;9.87e-10;2!DOID:962;9.87e-10;2!DOID:3095;1.89e-07;22!DOID:2994;1.89e-07;22!DOID:1192;6.69e-07;3|ontology_enrichment_disease_v019_2=DOID:171,1.29e-15,10;DOID:3193,1.03e-09,2;DOID:962,1.03e-09,2;DOID:3095,2.02e-07,22;DOID:2994,2.02e-07,22;DOID:1192,6.88e-07,3|ontology_enrichment_uberon=UBERON:0000476!1.49e-08!3;UBERON:0000920!1.49e-08!3;UBERON:0005631!1.64e-08!14;UBERON:0000158!1.64e-08!14;UBERON:0007023!1.18e-07!115;UBERON:0008814!4.44e-07!15|ontology_enrichment_uberon_v019=UBERON:0005631;1.15e-26;10!UBERON:0000158;1.15e-26;10!UBERON:0000305;7.30e-22;7!UBERON:0002134;9.48e-18;1!UBERON:0005208;9.48e-18;1!UBERON:0004145;9.48e-18;1!UBERON:0005946;9.48e-18;1!UBERON:0005965;9.48e-18;1!UBERON:0002078;9.48e-18;1!UBERON:0002346;1.17e-17;4!UBERON:0000923;1.17e-17;4!UBERON:0010316;1.17e-17;4!UBERON:0005291;1.17e-17;4!UBERON:0002050;2.49e-14;5!UBERON:0005423;2.49e-14;5!UBERON:0000478;2.45e-11;24!UBERON:0003714;9.87e-10;2!UBERON:0002081;1.51e-09;2!UBERON:0002133;1.51e-09;2!UBERON:0003978;8.86e-07;3!UBERON:0004151;8.86e-07;3!UBERON:0000946;8.86e-07;3!UBERON:0003124;8.86e-07;3!UBERON:0000920;8.86e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0000305,4.59e-22,7;UBERON:0004871,2.13e-19,8;UBERON:0005631,2.55e-19,14;UBERON:0000158,2.55e-19,14;UBERON:0002134,1.22e-17,1;UBERON:0005208,1.22e-17,1;UBERON:0005946,1.22e-17,1;UBERON:0005965,1.22e-17,1;UBERON:0002078,1.22e-17,1;UBERON:0004923,7.45e-12,66;UBERON:0000478,2.02e-11,24;UBERON:0003714,1.03e-09,2;UBERON:0002081,1.71e-09,2;UBERON:0002133,1.71e-09,2;UBERON:0010227,1.71e-09,2;UBERON:0000920,8.62e-07,3;UBERON:0003978,9.64e-07,3;UBERON:0009751,9.64e-07,3;UBERON:0004151,9.64e-07,3;UBERON:0000946,9.64e-07,3;UBERON:0002523,9.64e-07,3;UBERON:0005983,9.64e-07,3;UBERON:0004145,9.64e-07,3;UBERON:0002165,9.64e-07,3;UBERON:0002062,9.64e-07,3;UBERON:0007280,9.64e-07,3|phase1_expression=0,0,0,1.0007329835313,0.446961094427288,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.69490601792545,0.12786256184353,0,0,0,0,0.486634870302636,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0.453728732640084,0,0,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0.473107245101804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246381468041427,0,0.232420756919918,0,0,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,1.90995587790152,2.96964680832639,1.84296421259539,0,0.281338832821026,0.111308705022906,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0.438770794307945,0,0,0.153900517007594,0,0,0,0,1.5950057986596,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203996435272644,0,0,0.136905378891993,0,0,0,0,0,1.43574604915363,0.199679000498991,0,0,0.0671834724867263,0,0,0,0,0,0.196854963029498,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.0524545881349981,0,0,0,0,0,1.77987976358325,0,0,0,0,0,0,0.226624183040251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0.705797459094515,0,0.144921028610825,0,0,0,0,0,0.889811221596536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=56603 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=20581 | |||
|TSSclassifier=N | |||
|UniProt=Q9NR63 | |||
|association_with_transcript=-380bp_to_ENST00000001146_5end | |||
|coexpression_cluster_id=C2704 | |||
|description=CAGE_peak_8_at_CYP26B1_5end | |||
|id=chr2:72375547..72375559,- | |||
|ontology_enrichment_celltype=CL:0002541!1.49e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0002537;2.71e-30;5!CL:0000349;3.12e-14;19!CL:0000746;6.14e-07;3!CL:0002541;8.86e-07;3!CL:0002615;8.86e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002537,1.42e-30,5;CL:0000349,2.45e-14,19;CL:0000746,6.14e-07,3;CL:0000513,6.14e-07,3;CL:0002541,8.62e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000513;6.14e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:171;1.11e-15;10!DOID:3193;9.87e-10;2!DOID:962;9.87e-10;2!DOID:3095;1.89e-07;22!DOID:2994;1.89e-07;22!DOID:1192;6.69e-07;3 | |||
|ontology_enrichment_disease_v019_2=DOID:171,1.29e-15,10;DOID:3193,1.03e-09,2;DOID:962,1.03e-09,2;DOID:3095,2.02e-07,22;DOID:2994,2.02e-07,22;DOID:1192,6.88e-07,3 | |||
|ontology_enrichment_uberon=UBERON:0000476!1.49e-08!3;UBERON:0000920!1.49e-08!3;UBERON:0005631!1.64e-08!14;UBERON:0000158!1.64e-08!14;UBERON:0007023!1.18e-07!115;UBERON:0008814!4.44e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0005631;1.15e-26;10!UBERON:0000158;1.15e-26;10!UBERON:0000305;7.30e-22;7!UBERON:0002134;9.48e-18;1!UBERON:0005208;9.48e-18;1!UBERON:0004145;9.48e-18;1!UBERON:0005946;9.48e-18;1!UBERON:0005965;9.48e-18;1!UBERON:0002078;9.48e-18;1!UBERON:0002346;1.17e-17;4!UBERON:0000923;1.17e-17;4!UBERON:0010316;1.17e-17;4!UBERON:0005291;1.17e-17;4!UBERON:0002050;2.49e-14;5!UBERON:0005423;2.49e-14;5!UBERON:0000478;2.45e-11;24!UBERON:0003714;9.87e-10;2!UBERON:0002081;1.51e-09;2!UBERON:0002133;1.51e-09;2!UBERON:0003978;8.86e-07;3!UBERON:0004151;8.86e-07;3!UBERON:0000946;8.86e-07;3!UBERON:0003124;8.86e-07;3!UBERON:0000920;8.86e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000305,4.59e-22,7;UBERON:0004871,2.13e-19,8;UBERON:0005631,2.55e-19,14;UBERON:0000158,2.55e-19,14;UBERON:0002134,1.22e-17,1;UBERON:0005208,1.22e-17,1;UBERON:0005946,1.22e-17,1;UBERON:0005965,1.22e-17,1;UBERON:0002078,1.22e-17,1;UBERON:0004923,7.45e-12,66;UBERON:0000478,2.02e-11,24;UBERON:0003714,1.03e-09,2;UBERON:0002081,1.71e-09,2;UBERON:0002133,1.71e-09,2;UBERON:0010227,1.71e-09,2;UBERON:0000920,8.62e-07,3;UBERON:0003978,9.64e-07,3;UBERON:0009751,9.64e-07,3;UBERON:0004151,9.64e-07,3;UBERON:0000946,9.64e-07,3;UBERON:0002523,9.64e-07,3;UBERON:0005983,9.64e-07,3;UBERON:0004145,9.64e-07,3;UBERON:0002165,9.64e-07,3;UBERON:0002062,9.64e-07,3;UBERON:0007280,9.64e-07,3 | |||
|phase1_expression=0,0,0,1.0007329835313,0.446961094427288,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.69490601792545,0.12786256184353,0,0,0,0,0.486634870302636,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0.453728732640084,0,0,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.43596006883328,0,0,0,0,0,0,0,0,0,0,0,0,0.325736184293735,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0.473107245101804,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.246381468041427,0,0.232420756919918,0,0,0,0,0,0,0,0,0,0,0,0,0.170093705276516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154048617114644,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,1.90995587790152,2.96964680832639,1.84296421259539,0,0.281338832821026,0.111308705022906,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.344743373241465,0,0,0,0,0,0,0,0.438770794307945,0,0,0.153900517007594,0,0,0,0,1.5950057986596,0.183195186803725,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.203996435272644,0,0,0.136905378891993,0,0,0,0,0,1.43574604915363,0.199679000498991,0,0,0.0671834724867263,0,0,0,0,0,0.196854963029498,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.0524545881349981,0,0,0,0,0,1.77987976358325,0,0,0,0,0,0,0.226624183040251,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110929051536852,0.0620964029413835,0,0,0,0,0.705797459094515,0,0.144921028610825,0,0,0,0,0,0.889811221596536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0.176689145945881,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0.169732529954025,1.2754495206101,6.94040279850412,2.79322458986622,0,0,0,0.352675943690684,1.531227386766,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0.381382095467167,0,0,0,0,0,0,0,0,0.0675375846183947,0.781078098613847,0,0,0,0,0,0,0,0,0,0,0.227662191351298,0,0,0,0.135939465953663,0,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0.0771741581079447,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.462175628631418,0.432626562123789,0,0,0,0,0,0,0,0,0.267964130156178,0,0,0,0,0.258355639344024,0,0,0.190941474834495,0.202117188958219,0.217716747896961,0,0.0673520530145875,0.0717222053926763,0.665320713092027,0,0,0,0,0,0,0,0.665756774185513,0,0 | |||
|short_description=p8@CYP26B1 | |||
}} |
Revision as of 19:41, 12 September 2013
Short description: | p8@CYP26B1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_CYP26B1_5end |
Coexpression cluster: | C2704_amniotic_neuroectodermal_Cardiac_leiomyoblastoma_skin_neuroepithelioma_breast |
Association with transcript: | -380bp_to_ENST00000001146_5end |
EntrezGene: | CYP26B1 |
HGNC: | 20581 |
UniProt: | Q9NR63 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
amnion mesenchymal stem cell | 1.42e-30 | 5 |
extraembryonic cell | 2.45e-14 | 19 |
cardiac muscle cell | 6.14e-07 | 3 |
cardiac muscle myoblast | 6.14e-07 | 3 |
chorionic membrane mesenchymal stem cell | 8.62e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
amnion | 4.59e-22 | 7 |
somatic layer of lateral plate mesoderm | 2.13e-19 | 8 |
extraembryonic membrane | 2.55e-19 | 14 |
membranous layer | 2.55e-19 | 14 |
tricuspid valve | 1.22e-17 | 1 |
right atrium valve | 1.22e-17 | 1 |
outflow tract of atrium | 1.22e-17 | 1 |
outflow part of right atrium | 1.22e-17 | 1 |
right cardiac atrium | 1.22e-17 | 1 |
organ component layer | 7.45e-12 | 66 |
extraembryonic structure | 2.02e-11 | 24 |
neural tissue | 1.03e-09 | 2 |
cardiac atrium | 1.71e-09 | 2 |
atrioventricular valve | 1.71e-09 | 2 |
future cardiac atrium | 1.71e-09 | 2 |
egg chorion | 8.62e-07 | 3 |
valve | 9.64e-07 | 3 |
cardiac mesenchyme | 9.64e-07 | 3 |
cardiac chamber | 9.64e-07 | 3 |
cardial valve | 9.64e-07 | 3 |
tunica intima | 9.64e-07 | 3 |
heart layer | 9.64e-07 | 3 |
outflow tract | 9.64e-07 | 3 |
endocardium | 9.64e-07 | 3 |
endocardial cushion | 9.64e-07 | 3 |
presumptive endocardium | 9.64e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 1.29e-15 | 10 |
peripheral nerve sheath neoplasm | 1.03e-09 | 2 |
neurofibroma | 1.03e-09 | 2 |
germ cell and embryonal cancer | 2.02e-07 | 22 |
germ cell cancer | 2.02e-07 | 22 |
peripheral nervous system neoplasm | 6.88e-07 | 3 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.