FFCP PHASE1:Hg19::chr2:20793103..20793113,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C576|description=CAGE_peak_at_chr2:20793103..20793113,-|id=chr2:20793103..20793113,-|ontology_enrichment_celltype=CL:0000181!1.26e-18!12;CL:0000417!1.26e-18!12;CL:0000668!1.26e-18!12;CL:0000414!1.26e-18!12;CL:0000412!1.26e-18!12;CL:0000182!1.26e-18!12;CL:0000313!3.40e-07!1;CL:0000223!3.91e-07!59|ontology_enrichment_celltype_v019=CL:0000182;6.64e-59;12|ontology_enrichment_celltype_v019_2=CL:0000182,5.23e-59,12;CL:0000223,1.35e-12,58|ontology_enrichment_development_v019=UBERON:0004161;5.38e-64;11!UBERON:0009497;2.93e-54;13!UBERON:0001041;7.60e-24;30!UBERON:0003104;5.07e-23;31!CL:0000223;1.09e-08;58|ontology_enrichment_disease=DOID:2152!3.40e-07!1|ontology_enrichment_disease_v019=DOID:7;1.29e-07;39|ontology_enrichment_disease_v019_2=DOID:7,2.98e-07,39|ontology_enrichment_uberon=UBERON:0005057!1.65e-22!26;UBERON:0002107!2.66e-20!19;UBERON:0006925!2.66e-20!19;UBERON:0008836!2.66e-20!19;UBERON:0007499!4.60e-19!25;UBERON:0009856!2.85e-18!26;UBERON:0008835!2.27e-17!22;UBERON:0003894!2.27e-17!22;UBERON:0009854!1.46e-16!23;UBERON:0009497!3.86e-15!25;UBERON:0000015!3.86e-15!25;UBERON:0002423!3.86e-15!25;UBERON:0006235!3.86e-15!25;UBERON:0004161!3.86e-15!25;UBERON:0005172!5.40e-14!55;UBERON:0005173!5.40e-14!55;UBERON:0002368!3.87e-13!35;UBERON:0002417!2.18e-12!61;UBERON:0000916!2.18e-12!61;UBERON:0003929!5.48e-12!54;UBERON:0002365!5.66e-12!31;UBERON:0002330!5.66e-12!31;UBERON:0000949!6.94e-10!45;UBERON:0002106!3.98e-09!3;UBERON:0004854!3.98e-09!3;UBERON:0009034!3.98e-09!3;UBERON:0002095!3.98e-09!3;UBERON:0004782!3.98e-09!3;UBERON:0003281!3.98e-09!3;UBERON:0009664!3.98e-09!3;UBERON:0002296!3.98e-09!3;UBERON:0005602!3.98e-09!3;UBERON:0001179!3.98e-09!3;UBERON:0006293!3.98e-09!3;UBERON:0002530!7.50e-09!59;UBERON:0005911!1.18e-08!82;UBERON:0002135!1.51e-07!1;UBERON:0005177!2.94e-07!107;UBERON:0006834!3.01e-07!1;UBERON:0004911!3.40e-07!1;UBERON:0009569!9.65e-07!113|ontology_enrichment_uberon_v019=UBERON:0002107;1.97e-72;19!UBERON:0006925;1.97e-72;19!UBERON:0002423;3.42e-55;25!UBERON:0002365;1.85e-42;31!UBERON:0002330;1.85e-42;31!UBERON:0002368;8.12e-37;33!UBERON:0000949;3.26e-27;43!UBERON:0005172;7.04e-16;52!UBERON:0005173;7.04e-16;52!UBERON:0002417;3.41e-13;58!UBERON:0000916;3.41e-13;58!UBERON:0002530;1.62e-12;57!UBERON:0001007;1.73e-09;81|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.97e-72,19;UBERON:0006925,1.97e-72,19;UBERON:0008836,1.97e-72,19;UBERON:0008835,1.23e-62,22;UBERON:0003894,1.23e-62,22;UBERON:0009854,6.11e-60,23;UBERON:0007499,3.43e-55,25;UBERON:0009497,3.43e-55,25;UBERON:0000015,3.43e-55,25;UBERON:0002423,3.43e-55,25;UBERON:0006235,3.43e-55,25;UBERON:0004161,3.43e-55,25;UBERON:0009856,4.32e-53,26;UBERON:0002365,1.29e-44,31;UBERON:0002330,1.29e-44,31;UBERON:0002368,1.42e-39,35;UBERON:0000949,6.99e-31,45;UBERON:0003929,8.37e-26,54;UBERON:0005172,8.37e-26,54;UBERON:0005173,8.37e-26,54;UBERON:0002530,1.20e-23,59;UBERON:0002417,2.92e-23,60;UBERON:0000916,2.92e-23,60;UBERON:0005911,4.16e-17,82;UBERON:0001041,3.85e-16,87;UBERON:0005177,6.14e-14,101;UBERON:0009569,1.36e-12,112;UBERON:0003914,4.62e-12,117;UBERON:0004921,7.31e-12,118;UBERON:0005256,1.42e-11,122;UBERON:0001007,1.06e-09,145;UBERON:0001555,1.06e-09,145;UBERON:0007026,1.06e-09,145;UBERON:0000490,1.43e-09,148;UBERON:0001048,7.33e-09,160;UBERON:0003104,7.33e-09,160;UBERON:0009142,7.33e-09,160;UBERON:0004119,8.31e-09,160;UBERON:0000925,8.31e-09,160;UBERON:0006595,8.31e-09,160;UBERON:0000025,2.32e-07,192;UBERON:0002100,3.86e-07,199|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96565443335525,2.95394953340702,0,0.614942192715568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.659006605437454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.0671834724867263,0,0,2.28471228690949,2.30764403467266,1.95470277177136,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17241786942466,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.375935671919414,0.128915775947154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0.23806443146374,0,0,0,0.12729431655633,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0|short_description=p@chr2:20793103..20793113,-}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C576 | |||
|description=CAGE_peak_at_chr2:20793103..20793113,- | |||
|id=chr2:20793103..20793113,- | |||
|ontology_enrichment_celltype=CL:0000181!1.26e-18!12;CL:0000417!1.26e-18!12;CL:0000668!1.26e-18!12;CL:0000414!1.26e-18!12;CL:0000412!1.26e-18!12;CL:0000182!1.26e-18!12;CL:0000313!3.40e-07!1;CL:0000223!3.91e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000182;6.64e-59;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,5.23e-59,12;CL:0000223,1.35e-12,58 | |||
|ontology_enrichment_development_v019=UBERON:0004161;5.38e-64;11!UBERON:0009497;2.93e-54;13!UBERON:0001041;7.60e-24;30!UBERON:0003104;5.07e-23;31!CL:0000223;1.09e-08;58 | |||
|ontology_enrichment_disease=DOID:2152!3.40e-07!1 | |||
|ontology_enrichment_disease_v019=DOID:7;1.29e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:7,2.98e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0005057!1.65e-22!26;UBERON:0002107!2.66e-20!19;UBERON:0006925!2.66e-20!19;UBERON:0008836!2.66e-20!19;UBERON:0007499!4.60e-19!25;UBERON:0009856!2.85e-18!26;UBERON:0008835!2.27e-17!22;UBERON:0003894!2.27e-17!22;UBERON:0009854!1.46e-16!23;UBERON:0009497!3.86e-15!25;UBERON:0000015!3.86e-15!25;UBERON:0002423!3.86e-15!25;UBERON:0006235!3.86e-15!25;UBERON:0004161!3.86e-15!25;UBERON:0005172!5.40e-14!55;UBERON:0005173!5.40e-14!55;UBERON:0002368!3.87e-13!35;UBERON:0002417!2.18e-12!61;UBERON:0000916!2.18e-12!61;UBERON:0003929!5.48e-12!54;UBERON:0002365!5.66e-12!31;UBERON:0002330!5.66e-12!31;UBERON:0000949!6.94e-10!45;UBERON:0002106!3.98e-09!3;UBERON:0004854!3.98e-09!3;UBERON:0009034!3.98e-09!3;UBERON:0002095!3.98e-09!3;UBERON:0004782!3.98e-09!3;UBERON:0003281!3.98e-09!3;UBERON:0009664!3.98e-09!3;UBERON:0002296!3.98e-09!3;UBERON:0005602!3.98e-09!3;UBERON:0001179!3.98e-09!3;UBERON:0006293!3.98e-09!3;UBERON:0002530!7.50e-09!59;UBERON:0005911!1.18e-08!82;UBERON:0002135!1.51e-07!1;UBERON:0005177!2.94e-07!107;UBERON:0006834!3.01e-07!1;UBERON:0004911!3.40e-07!1;UBERON:0009569!9.65e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0002107;1.97e-72;19!UBERON:0006925;1.97e-72;19!UBERON:0002423;3.42e-55;25!UBERON:0002365;1.85e-42;31!UBERON:0002330;1.85e-42;31!UBERON:0002368;8.12e-37;33!UBERON:0000949;3.26e-27;43!UBERON:0005172;7.04e-16;52!UBERON:0005173;7.04e-16;52!UBERON:0002417;3.41e-13;58!UBERON:0000916;3.41e-13;58!UBERON:0002530;1.62e-12;57!UBERON:0001007;1.73e-09;81 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.97e-72,19;UBERON:0006925,1.97e-72,19;UBERON:0008836,1.97e-72,19;UBERON:0008835,1.23e-62,22;UBERON:0003894,1.23e-62,22;UBERON:0009854,6.11e-60,23;UBERON:0007499,3.43e-55,25;UBERON:0009497,3.43e-55,25;UBERON:0000015,3.43e-55,25;UBERON:0002423,3.43e-55,25;UBERON:0006235,3.43e-55,25;UBERON:0004161,3.43e-55,25;UBERON:0009856,4.32e-53,26;UBERON:0002365,1.29e-44,31;UBERON:0002330,1.29e-44,31;UBERON:0002368,1.42e-39,35;UBERON:0000949,6.99e-31,45;UBERON:0003929,8.37e-26,54;UBERON:0005172,8.37e-26,54;UBERON:0005173,8.37e-26,54;UBERON:0002530,1.20e-23,59;UBERON:0002417,2.92e-23,60;UBERON:0000916,2.92e-23,60;UBERON:0005911,4.16e-17,82;UBERON:0001041,3.85e-16,87;UBERON:0005177,6.14e-14,101;UBERON:0009569,1.36e-12,112;UBERON:0003914,4.62e-12,117;UBERON:0004921,7.31e-12,118;UBERON:0005256,1.42e-11,122;UBERON:0001007,1.06e-09,145;UBERON:0001555,1.06e-09,145;UBERON:0007026,1.06e-09,145;UBERON:0000490,1.43e-09,148;UBERON:0001048,7.33e-09,160;UBERON:0003104,7.33e-09,160;UBERON:0009142,7.33e-09,160;UBERON:0004119,8.31e-09,160;UBERON:0000925,8.31e-09,160;UBERON:0006595,8.31e-09,160;UBERON:0000025,2.32e-07,192;UBERON:0002100,3.86e-07,199 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.290209238628584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.96565443335525,2.95394953340702,0,0.614942192715568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.659006605437454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254253650292766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.279282401272254,0,0,0,0,0,0.0671834724867263,0,0,2.28471228690949,2.30764403467266,1.95470277177136,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17241786942466,1.32506888912221,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111855431797792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.375935671919414,0.128915775947154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0.23806443146374,0,0,0,0.12729431655633,0,0,0,0,0,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |||
|short_description=p@chr2:20793103..20793113,- | |||
}} |
Revision as of 16:13, 12 September 2013
Short description: | p@chr2:20793103..20793113, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:20793103..20793113, - |
Coexpression cluster: | C576_Hepatocyte_hepatocellular_liver_Intestinal_mature_breast_Prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 5.23e-59 | 12 |
endodermal cell | 1.35e-12 | 58 |
Ontology term | p-value | n |
---|---|---|
disease of anatomical entity | 2.98e-07 | 39 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.