FFCP PHASE1:Hg19::chr2:166060571..166060582,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6328|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=10590|TSSclassifier=S|UniProt=Q9NY46,Q9C007|association_with_transcript=0bp_to_ENST00000360093,NM_001081676,NM_001081677,NM_006922,uc002ucx.2,uc002ucy.2,uc002ucz.2_5end|coexpression_cluster_id=C2665|description=CAGE_peak_2_at_SCN3A_5end|id=chr2:166060571..166060582,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000047,6.34e-08,8|ontology_enrichment_development_v019=UBERON:0006601;3.65e-13;82!UBERON:0006215;1.25e-08;3!UBERON:0006241;1.63e-07;3!UBERON:0003057;1.63e-07;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!3.86e-42!57;UBERON:0005068!3.86e-42!57;UBERON:0006241!3.86e-42!57;UBERON:0007135!3.86e-42!57;UBERON:0001017!1.39e-41!82;UBERON:0000073!3.58e-40!94;UBERON:0001016!3.58e-40!94;UBERON:0005743!7.07e-40!86;UBERON:0007023!3.43e-39!115;UBERON:0002616!2.74e-34!59;UBERON:0000955!4.55e-34!69;UBERON:0006238!4.55e-34!69;UBERON:0002780!9.92e-34!41;UBERON:0001890!9.92e-34!41;UBERON:0006240!9.92e-34!41;UBERON:0002020!3.28e-33!34;UBERON:0003528!3.28e-33!34;UBERON:0001893!6.23e-33!34;UBERON:0003080!1.31e-32!42;UBERON:0002791!7.66e-32!33;UBERON:0001869!1.94e-31!32;UBERON:0002346!1.99e-31!90;UBERON:0003075!3.44e-31!86;UBERON:0007284!3.44e-31!86;UBERON:0002619!1.62e-25!22;UBERON:0000956!2.14e-23!25;UBERON:0000203!2.14e-23!25;UBERON:0001950!4.48e-23!20;UBERON:0003056!1.44e-21!61;UBERON:0000924!3.87e-21!173;UBERON:0006601!3.87e-21!173;UBERON:0004121!1.31e-20!169;UBERON:0000153!1.85e-17!129;UBERON:0007811!1.85e-17!129;UBERON:0000033!8.54e-17!123;UBERON:0002420!1.44e-11!9;UBERON:0007245!1.44e-11!9;UBERON:0010009!1.44e-11!9;UBERON:0010011!1.44e-11!9;UBERON:0000454!1.44e-11!9;UBERON:0000025!2.63e-11!194;UBERON:0002308!2.80e-11!9;UBERON:0000125!2.80e-11!9;UBERON:0003076!1.79e-10!15;UBERON:0003057!1.79e-10!15;UBERON:0000064!4.27e-10!219;UBERON:0009663!4.20e-09!7;UBERON:0000200!1.51e-08!6;UBERON:0004732!1.57e-08!13;UBERON:0001871!1.72e-08!7;UBERON:0004111!2.93e-08!241;UBERON:0000477!9.31e-08!286;UBERON:0004733!1.19e-07!12;UBERON:0002028!1.19e-07!12;UBERON:0007277!1.19e-07!12;UBERON:0000349!1.19e-07!5;UBERON:0001872!2.51e-07!5;UBERON:0002021!3.07e-07!5;UBERON:0002298!6.91e-07!8;UBERON:0000483!8.71e-07!309|ontology_enrichment_uberon_v019=UBERON:0001869;4.87e-50;32!UBERON:0003528;3.05e-48;34!UBERON:0002020;3.05e-48;34!UBERON:0002791;6.81e-47;32!UBERON:0002619;5.72e-46;22!UBERON:0001893;1.21e-44;34!UBERON:0002780;1.08e-41;41!UBERON:0001890;1.08e-41;41!UBERON:0001950;3.93e-41;20!UBERON:0000956;6.28e-40;25!UBERON:0000203;6.28e-40;25!UBERON:0000073;1.71e-37;53!UBERON:0002616;1.71e-37;53!UBERON:0001017;2.02e-27;75!UBERON:0000955;2.27e-26;68!UBERON:0001016;5.07e-26;83!UBERON:0002420;7.48e-18;9!UBERON:0007245;7.48e-18;9!UBERON:0010009;7.48e-18;9!UBERON:0010011;7.48e-18;9!UBERON:0000454;7.48e-18;9!UBERON:0000125;3.22e-17;9!UBERON:0002308;3.22e-17;9!UBERON:0000200;2.08e-15;6!UBERON:0004732;1.25e-13;13!UBERON:0000349;1.26e-13;5!UBERON:0001871;2.06e-13;6!UBERON:0009663;4.47e-13;7!UBERON:0001872;4.93e-13;5!UBERON:0004733;6.31e-12;12!UBERON:0002028;6.31e-12;12!UBERON:0000369;3.18e-11;4!UBERON:0002435;3.18e-11;4!UBERON:0000204;3.18e-11;4!UBERON:0007023;6.97e-10;114!UBERON:0002298;1.05e-09;6!UBERON:0002680;1.58e-09;9!UBERON:0001895;1.58e-09;9!UBERON:0002021;5.10e-09;5!UBERON:0005383;5.29e-09;3!UBERON:0005382;5.29e-09;3!UBERON:0011216;5.86e-09;132!UBERON:0001870;8.92e-09;3!UBERON:0000988;9.79e-08;3!UBERON:0002240;1.63e-07;3!UBERON:0005174;1.63e-07;3!UBERON:0001137;1.63e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0001049,8.72e-73,56;UBERON:0005068,8.72e-73,56;UBERON:0006241,8.72e-73,56;UBERON:0007135,8.72e-73,56;UBERON:0001016,3.01e-68,89;UBERON:0001017,3.36e-68,81;UBERON:0000073,1.09e-66,53;UBERON:0002616,1.09e-66,53;UBERON:0000955,2.20e-57,68;UBERON:0006238,2.20e-57,68;UBERON:0003528,7.56e-56,34;UBERON:0002020,7.56e-56,34;UBERON:0002780,1.45e-55,41;UBERON:0001890,1.45e-55,41;UBERON:0003080,1.45e-55,41;UBERON:0006240,1.45e-55,41;UBERON:0001869,1.71e-55,32;UBERON:0001893,7.87e-52,34;UBERON:0002791,1.78e-51,32;UBERON:0003075,1.06e-50,82;UBERON:0007284,1.06e-50,82;UBERON:0002346,8.88e-48,86;UBERON:0002619,1.10e-45,22;UBERON:0001950,7.63e-41,20;UBERON:0000956,1.11e-39,25;UBERON:0000203,1.11e-39,25;UBERON:0010371,2.53e-39,104;UBERON:0003056,8.24e-37,61;UBERON:0004121,6.81e-32,171;UBERON:0000924,6.81e-32,171;UBERON:0006601,6.81e-32,171;UBERON:0010314,6.54e-30,132;UBERON:0007023,1.83e-29,114;UBERON:0011216,9.43e-25,223;UBERON:0002420,6.80e-18,9;UBERON:0007245,6.80e-18,9;UBERON:0010009,6.80e-18,9;UBERON:0010011,6.80e-18,9;UBERON:0000454,6.80e-18,9;UBERON:0000025,9.25e-18,192;UBERON:0003076,1.43e-17,15;UBERON:0003057,1.43e-17,15;UBERON:0000125,2.25e-17,9;UBERON:0002308,2.25e-17,9;UBERON:0000200,2.04e-15,6;UBERON:0004732,8.28e-14,13;UBERON:0000349,1.20e-13,5;UBERON:0001871,2.23e-13,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6328 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10590 | |||
|TSSclassifier=S | |||
|UniProt=Q9NY46,Q9C007 | |||
|association_with_transcript=0bp_to_ENST00000360093,NM_001081676,NM_001081677,NM_006922,uc002ucx.2,uc002ucy.2,uc002ucz.2_5end | |||
|coexpression_cluster_id=C2665 | |||
|description=CAGE_peak_2_at_SCN3A_5end | |||
|id=chr2:166060571..166060582,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,6.34e-08,8 | |||
|ontology_enrichment_development_v019=UBERON:0006601;3.65e-13;82!UBERON:0006215;1.25e-08;3!UBERON:0006241;1.63e-07;3!UBERON:0003057;1.63e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.86e-42!57;UBERON:0005068!3.86e-42!57;UBERON:0006241!3.86e-42!57;UBERON:0007135!3.86e-42!57;UBERON:0001017!1.39e-41!82;UBERON:0000073!3.58e-40!94;UBERON:0001016!3.58e-40!94;UBERON:0005743!7.07e-40!86;UBERON:0007023!3.43e-39!115;UBERON:0002616!2.74e-34!59;UBERON:0000955!4.55e-34!69;UBERON:0006238!4.55e-34!69;UBERON:0002780!9.92e-34!41;UBERON:0001890!9.92e-34!41;UBERON:0006240!9.92e-34!41;UBERON:0002020!3.28e-33!34;UBERON:0003528!3.28e-33!34;UBERON:0001893!6.23e-33!34;UBERON:0003080!1.31e-32!42;UBERON:0002791!7.66e-32!33;UBERON:0001869!1.94e-31!32;UBERON:0002346!1.99e-31!90;UBERON:0003075!3.44e-31!86;UBERON:0007284!3.44e-31!86;UBERON:0002619!1.62e-25!22;UBERON:0000956!2.14e-23!25;UBERON:0000203!2.14e-23!25;UBERON:0001950!4.48e-23!20;UBERON:0003056!1.44e-21!61;UBERON:0000924!3.87e-21!173;UBERON:0006601!3.87e-21!173;UBERON:0004121!1.31e-20!169;UBERON:0000153!1.85e-17!129;UBERON:0007811!1.85e-17!129;UBERON:0000033!8.54e-17!123;UBERON:0002420!1.44e-11!9;UBERON:0007245!1.44e-11!9;UBERON:0010009!1.44e-11!9;UBERON:0010011!1.44e-11!9;UBERON:0000454!1.44e-11!9;UBERON:0000025!2.63e-11!194;UBERON:0002308!2.80e-11!9;UBERON:0000125!2.80e-11!9;UBERON:0003076!1.79e-10!15;UBERON:0003057!1.79e-10!15;UBERON:0000064!4.27e-10!219;UBERON:0009663!4.20e-09!7;UBERON:0000200!1.51e-08!6;UBERON:0004732!1.57e-08!13;UBERON:0001871!1.72e-08!7;UBERON:0004111!2.93e-08!241;UBERON:0000477!9.31e-08!286;UBERON:0004733!1.19e-07!12;UBERON:0002028!1.19e-07!12;UBERON:0007277!1.19e-07!12;UBERON:0000349!1.19e-07!5;UBERON:0001872!2.51e-07!5;UBERON:0002021!3.07e-07!5;UBERON:0002298!6.91e-07!8;UBERON:0000483!8.71e-07!309 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;4.87e-50;32!UBERON:0003528;3.05e-48;34!UBERON:0002020;3.05e-48;34!UBERON:0002791;6.81e-47;32!UBERON:0002619;5.72e-46;22!UBERON:0001893;1.21e-44;34!UBERON:0002780;1.08e-41;41!UBERON:0001890;1.08e-41;41!UBERON:0001950;3.93e-41;20!UBERON:0000956;6.28e-40;25!UBERON:0000203;6.28e-40;25!UBERON:0000073;1.71e-37;53!UBERON:0002616;1.71e-37;53!UBERON:0001017;2.02e-27;75!UBERON:0000955;2.27e-26;68!UBERON:0001016;5.07e-26;83!UBERON:0002420;7.48e-18;9!UBERON:0007245;7.48e-18;9!UBERON:0010009;7.48e-18;9!UBERON:0010011;7.48e-18;9!UBERON:0000454;7.48e-18;9!UBERON:0000125;3.22e-17;9!UBERON:0002308;3.22e-17;9!UBERON:0000200;2.08e-15;6!UBERON:0004732;1.25e-13;13!UBERON:0000349;1.26e-13;5!UBERON:0001871;2.06e-13;6!UBERON:0009663;4.47e-13;7!UBERON:0001872;4.93e-13;5!UBERON:0004733;6.31e-12;12!UBERON:0002028;6.31e-12;12!UBERON:0000369;3.18e-11;4!UBERON:0002435;3.18e-11;4!UBERON:0000204;3.18e-11;4!UBERON:0007023;6.97e-10;114!UBERON:0002298;1.05e-09;6!UBERON:0002680;1.58e-09;9!UBERON:0001895;1.58e-09;9!UBERON:0002021;5.10e-09;5!UBERON:0005383;5.29e-09;3!UBERON:0005382;5.29e-09;3!UBERON:0011216;5.86e-09;132!UBERON:0001870;8.92e-09;3!UBERON:0000988;9.79e-08;3!UBERON:0002240;1.63e-07;3!UBERON:0005174;1.63e-07;3!UBERON:0001137;1.63e-07;3 | |||
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|short_description=p2@SCN3A | |||
}} |
Revision as of 14:28, 12 September 2013
Short description: | p2@SCN3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_SCN3A_5end |
Coexpression cluster: | C2665_occipital_parietal_normal_temporal_duodenum_somatostatinoma_putamen |
Association with transcript: | 0bp_to_ENST00000360093, NM_001081676, NM_001081677, NM_006922, uc002ucx.2, uc002ucy.2, uc002ucz.2_5end |
EntrezGene: | SCN3A |
HGNC: | 10590 |
UniProt: | Q9NY46Q9C007 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 6.34e-08 | 8 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.