FFCP PHASE1:Hg19::chr20:43439119..43439165,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=140730|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=16183|TSSclassifier=W|UniProt=Q9H426,A4FU94,E1P613|association_with_transcript=-140bp_to_ENST00000372851,NM_001205317,NM_182970_5end|coexpression_cluster_id=C3|description=CAGE_peak_1_at_RIMS4_5end|id=chr20:43439119..43439165,-|ontology_enrichment_celltype=CL:0000047!1.33e-07!8|ontology_enrichment_celltype_v019=CL:0000540;1.07e-08;6!CL:0000404;1.07e-08;6!CL:0002322;1.21e-07;5|ontology_enrichment_celltype_v019_2=CL:0000047,4.32e-11,8;CL:0000540,9.30e-09,6;CL:0000031,9.30e-09,6;CL:0000404,9.30e-09,6;CL:0002322,9.04e-08,5|ontology_enrichment_development_v019=UBERON:0006601;9.22e-11;82!CL:0000031;1.07e-08;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!2.10e-41!115;UBERON:0001017!9.79e-40!82;UBERON:0005743!3.94e-38!86;UBERON:0000073!7.53e-38!94;UBERON:0001016!7.53e-38!94;UBERON:0001049!3.27e-37!57;UBERON:0005068!3.27e-37!57;UBERON:0006241!3.27e-37!57;UBERON:0007135!3.27e-37!57;UBERON:0003080!4.79e-33!42;UBERON:0002780!2.71e-32!41;UBERON:0001890!2.71e-32!41;UBERON:0006240!2.71e-32!41;UBERON:0002616!4.94e-32!59;UBERON:0000955!3.69e-31!69;UBERON:0006238!3.69e-31!69;UBERON:0003075!5.22e-29!86;UBERON:0007284!5.22e-29!86;UBERON:0002020!2.02e-27!34;UBERON:0003528!2.02e-27!34;UBERON:0001893!2.74e-27!34;UBERON:0002346!1.10e-26!90;UBERON:0001869!2.00e-26!32;UBERON:0002791!2.92e-26!33;UBERON:0002619!7.43e-24!22;UBERON:0001950!4.86e-22!20;UBERON:0003056!2.12e-21!61;UBERON:0004121!3.19e-20!169;UBERON:0000956!6.39e-20!25;UBERON:0000203!6.39e-20!25;UBERON:0000924!4.20e-19!173;UBERON:0006601!4.20e-19!173;UBERON:0000153!3.35e-18!129;UBERON:0007811!3.35e-18!129;UBERON:0000033!2.93e-17!123;UBERON:0002420!3.04e-09!9;UBERON:0007245!3.04e-09!9;UBERON:0010009!3.04e-09!9;UBERON:0010011!3.04e-09!9;UBERON:0000454!3.04e-09!9;UBERON:0001871!3.96e-09!7;UBERON:0002308!6.04e-09!9;UBERON:0000125!6.04e-09!9;UBERON:0000922!6.71e-09!612;UBERON:0000468!1.74e-08!659;UBERON:0000064!2.94e-08!219;UBERON:0000200!1.29e-07!6;UBERON:0009663!2.27e-07!7;UBERON:0002298!3.82e-07!8|ontology_enrichment_uberon_v019=UBERON:0001869;2.07e-37;32!UBERON:0002619;7.64e-37;22!UBERON:0003528;1.68e-35;34!UBERON:0002020;1.68e-35;34!UBERON:0002791;6.16e-35;32!UBERON:0001950;6.05e-34;20!UBERON:0001893;2.82e-33;34!UBERON:0002780;1.73e-32;41!UBERON:0001890;1.73e-32;41!UBERON:0000956;1.23e-31;25!UBERON:0000203;1.23e-31;25!UBERON:0000073;1.84e-26;53!UBERON:0002616;1.84e-26;53!UBERON:0000955;2.51e-20;68!UBERON:0001017;7.65e-19;75!UBERON:0001016;4.45e-18;83!UBERON:0007023;2.88e-12;114!UBERON:0001871;4.79e-12;6!UBERON:0002420;2.40e-11;9!UBERON:0007245;2.40e-11;9!UBERON:0010009;2.40e-11;9!UBERON:0010011;2.40e-11;9!UBERON:0000454;2.40e-11;9!UBERON:0000200;4.03e-11;6!UBERON:0000125;6.65e-11;9!UBERON:0002308;6.65e-11;9!UBERON:0001872;1.91e-09;5!UBERON:0002021;2.15e-09;5!UBERON:0000349;4.34e-09;5!UBERON:0009663;1.81e-08;7!UBERON:0011216;2.66e-08;132!UBERON:0000369;1.54e-07;4!UBERON:0002435;1.54e-07;4!UBERON:0000204;1.54e-07;4!UBERON:0001894;3.95e-07;7|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.39e-54,89;UBERON:0001017,1.11e-53,81;UBERON:0000073,7.16e-48,53;UBERON:0002616,7.16e-48,53;UBERON:0001049,6.14e-47,56;UBERON:0005068,6.14e-47,56;UBERON:0006241,6.14e-47,56;UBERON:0007135,6.14e-47,56;UBERON:0002780,1.39e-44,41;UBERON:0001890,1.39e-44,41;UBERON:0003080,1.39e-44,41;UBERON:0006240,1.39e-44,41;UBERON:0007023,1.57e-42,114;UBERON:0000955,6.13e-42,68;UBERON:0006238,6.13e-42,68;UBERON:0001869,6.55e-42,32;UBERON:0003528,2.63e-41,34;UBERON:0002020,2.63e-41,34;UBERON:0001893,6.84e-39,34;UBERON:0002791,9.83e-39,32;UBERON:0002619,9.07e-37,22;UBERON:0003075,1.80e-36,82;UBERON:0007284,1.80e-36,82;UBERON:0002346,4.90e-34,86;UBERON:0001950,6.82e-34,20;UBERON:0003056,1.06e-32,61;UBERON:0000956,1.43e-31,25;UBERON:0000203,1.43e-31,25;UBERON:0011216,1.32e-26,223;UBERON:0010371,1.92e-25,104;UBERON:0004121,6.18e-25,171;UBERON:0000924,6.18e-25,171;UBERON:0006601,6.18e-25,171;UBERON:0010314,8.18e-24,132;UBERON:0001871,5.56e-12,6;UBERON:0002420,1.80e-11,9;UBERON:0007245,1.80e-11,9;UBERON:0010009,1.80e-11,9;UBERON:0010011,1.80e-11,9;UBERON:0000454,1.80e-11,9;UBERON:0000200,4.13e-11,6;UBERON:0000125,4.79e-11,9;UBERON:0002308,4.79e-11,9;UBERON:0000025,2.63e-10,192;UBERON:0001872,1.87e-09,5;UBERON:0002021,2.07e-09,5;UBERON:0000349,4.47e-09,5;UBERON:0009663,1.39e-08,7;UBERON:0004111,1.11e-07,240;UBERON:0000369,1.14e-07,4;UBERON:0002435,1.14e-07,4;UBERON:0000204,1.14e-07,4;UBERON:0010082,1.14e-07,4;UBERON:0000922,1.23e-07,592;UBERON:0001894,4.32e-07,7;UBERON:0006222,4.32e-07,7|phase1_expression=0.181678379270557,0.214100523890983,0,0,0.446961094427288,0,5.06599756336621,0.631719873426831,1.56711376919903,0,0,0,0,0.495065411840187,0.331397375727916,0,0,0,0,0,0,0.626909442956176,0,0,0,0,0,0,0,0,0.154816123316076,0,0,0,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.63933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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=140730 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16183 | |||
|TSSclassifier=W | |||
|UniProt=Q9H426,A4FU94,E1P613 | |||
|association_with_transcript=-140bp_to_ENST00000372851,NM_001205317,NM_182970_5end | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_1_at_RIMS4_5end | |||
|id=chr20:43439119..43439165,- | |||
|ontology_enrichment_celltype=CL:0000047!1.33e-07!8 | |||
|ontology_enrichment_celltype_v019=CL:0000540;1.07e-08;6!CL:0000404;1.07e-08;6!CL:0002322;1.21e-07;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,4.32e-11,8;CL:0000540,9.30e-09,6;CL:0000031,9.30e-09,6;CL:0000404,9.30e-09,6;CL:0002322,9.04e-08,5 | |||
|ontology_enrichment_development_v019=UBERON:0006601;9.22e-11;82!CL:0000031;1.07e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.10e-41!115;UBERON:0001017!9.79e-40!82;UBERON:0005743!3.94e-38!86;UBERON:0000073!7.53e-38!94;UBERON:0001016!7.53e-38!94;UBERON:0001049!3.27e-37!57;UBERON:0005068!3.27e-37!57;UBERON:0006241!3.27e-37!57;UBERON:0007135!3.27e-37!57;UBERON:0003080!4.79e-33!42;UBERON:0002780!2.71e-32!41;UBERON:0001890!2.71e-32!41;UBERON:0006240!2.71e-32!41;UBERON:0002616!4.94e-32!59;UBERON:0000955!3.69e-31!69;UBERON:0006238!3.69e-31!69;UBERON:0003075!5.22e-29!86;UBERON:0007284!5.22e-29!86;UBERON:0002020!2.02e-27!34;UBERON:0003528!2.02e-27!34;UBERON:0001893!2.74e-27!34;UBERON:0002346!1.10e-26!90;UBERON:0001869!2.00e-26!32;UBERON:0002791!2.92e-26!33;UBERON:0002619!7.43e-24!22;UBERON:0001950!4.86e-22!20;UBERON:0003056!2.12e-21!61;UBERON:0004121!3.19e-20!169;UBERON:0000956!6.39e-20!25;UBERON:0000203!6.39e-20!25;UBERON:0000924!4.20e-19!173;UBERON:0006601!4.20e-19!173;UBERON:0000153!3.35e-18!129;UBERON:0007811!3.35e-18!129;UBERON:0000033!2.93e-17!123;UBERON:0002420!3.04e-09!9;UBERON:0007245!3.04e-09!9;UBERON:0010009!3.04e-09!9;UBERON:0010011!3.04e-09!9;UBERON:0000454!3.04e-09!9;UBERON:0001871!3.96e-09!7;UBERON:0002308!6.04e-09!9;UBERON:0000125!6.04e-09!9;UBERON:0000922!6.71e-09!612;UBERON:0000468!1.74e-08!659;UBERON:0000064!2.94e-08!219;UBERON:0000200!1.29e-07!6;UBERON:0009663!2.27e-07!7;UBERON:0002298!3.82e-07!8 | |||
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| |||
|short_description=p1@RIMS4 | |||
}} |
Revision as of 08:37, 12 September 2013
Short description: | p1@RIMS4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_RIMS4_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | -140bp_to_ENST00000372851, NM_001205317, NM_182970_5end |
EntrezGene: | RIMS4 |
HGNC: | 16183 |
UniProt: | Q9H426A4FU94E1P613 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 4.32e-11 | 8 |
neuron | 9.30e-09 | 6 |
neuroblast | 9.30e-09 | 6 |
electrically signaling cell | 9.30e-09 | 6 |
embryonic stem cell | 9.04e-08 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.