FFCP PHASE1:Hg19::chr1:152974218..152974231,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=6707|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11268|TSSclassifier=N|UniProt=Q9UBC9,B1AN48|association_with_transcript=0bp_to_ENST00000331860,ENST00000443178,ENST00000495845,NM_001097589,NM_005416,uc001fax.3,uc001fay.2,uc001faz.3_5end|coexpression_cluster_id=C60|description=CAGE_peak_1_at_SPRR3_5end|id=chr1:152974218..152974231,+|ontology_enrichment_celltype=CL:0002076!3.26e-15!43;CL:0000066!4.73e-11!254;CL:0000223!1.10e-10!59;CL:0002368!1.94e-10!13;CL:0002159!3.59e-09!13;CL:0002251!3.91e-09!21;CL:0000622!5.40e-08!5;CL:0000244!9.29e-07!4;CL:0000731!9.29e-07!4|ontology_enrichment_celltype_v019=CL:0002076;6.24e-19;42!CL:0002368;1.61e-15;13!CL:0002251;4.59e-13;20!CL:0000622;3.21e-11;5!CL:0000244;2.31e-09;4!CL:0000731;2.31e-09;4!CL:0000154;2.89e-09;6!CL:0002202;1.35e-08;9!CL:0002632;1.35e-08;9!CL:0002159;2.07e-08;14!CL:0002623;6.65e-08;3!CL:0002328;1.34e-07;3!CL:0000307;2.07e-07;3!CL:0000349;2.31e-07;19!CL:0002621;2.74e-07;3|ontology_enrichment_celltype_v019_2=CL:0002076,1.23e-23,42;CL:0000223,1.58e-16,58;CL:0002368,1.64e-15,13;CL:0002251,4.54e-13,20;CL:0000622,3.24e-11,5;CL:0000066,6.63e-10,253;CL:0000244,2.28e-09,4;CL:0000731,2.28e-09,4;CL:0000154,2.91e-09,6;CL:0002202,1.37e-08,9;CL:0002632,1.37e-08,9;CL:0002159,2.08e-08,14;CL:0002623,6.73e-08,3;CL:0002328,1.34e-07,3;CL:0000068,2.12e-07,3;CL:0000069,2.12e-07,3;CL:0000307,2.12e-07,3;CL:0000377,2.12e-07,3;CL:0000349,2.31e-07,19;CL:0002621,2.74e-07,3|ontology_enrichment_development_v019=CL:0000223;1.13e-08;58!CL:0000377;2.07e-07;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004119!3.86e-19!169;UBERON:0000925!3.86e-19!169;UBERON:0006595!3.86e-19!169;UBERON:0001004!2.16e-17!72;UBERON:0000161!3.55e-13!35;UBERON:0000166!7.76e-13!21;UBERON:0005631!1.86e-12!14;UBERON:0000158!1.86e-12!14;UBERON:0001007!5.57e-12!155;UBERON:0001555!5.57e-12!155;UBERON:0007026!5.57e-12!155;UBERON:0000165!6.83e-10!28;UBERON:0000930!6.83e-10!28;UBERON:0000065!1.26e-09!53;UBERON:0000077!1.90e-09!130;UBERON:0003124!2.94e-09!7;UBERON:0004921!2.52e-08!129;UBERON:0004185!2.52e-08!129;UBERON:0000064!4.74e-08!219;UBERON:0000365!8.37e-08!5;UBERON:0000464!1.06e-07!104;UBERON:0005181!3.02e-07!35;UBERON:0000468!3.10e-07!659;UBERON:0000478!3.58e-07!24;UBERON:0000062!5.34e-07!511;UBERON:0001444!7.98e-07!48|ontology_enrichment_uberon_v019=UBERON:0000165;1.59e-12;28!UBERON:0000161;5.93e-12;19!UBERON:0000166;5.93e-12;19!UBERON:0000365;6.39e-11;5!UBERON:0000486;1.75e-10;12!UBERON:0000344;2.53e-10;20!UBERON:0005910;5.07e-09;6!UBERON:0000974;1.14e-08;6!UBERON:0007196;1.49e-08;15!UBERON:0001558;1.49e-08;15!UBERON:0000478;2.33e-08;24!UBERON:0001987;2.38e-08;4!UBERON:0003126;3.97e-08;7!UBERON:0001005;3.97e-08;7!UBERON:0004815;1.34e-07;3!UBERON:0002031;1.34e-07;3!UBERON:0005631;2.65e-07;10!UBERON:0000158;2.65e-07;10!UBERON:0001949;2.74e-07;3!UBERON:0001041;3.81e-07;14!UBERON:0003729;4.76e-07;13|ontology_enrichment_uberon_v019_2=UBERON:0004119,8.09e-19,160;UBERON:0000925,8.09e-19,160;UBERON:0006595,8.09e-19,160;UBERON:0000161,5.41e-17,36;UBERON:0000166,1.55e-14,22;UBERON:0001004,2.88e-13,74;UBERON:0005631,3.35e-13,14;UBERON:0000158,3.35e-13,14;UBERON:0003102,3.29e-12,99;UBERON:0000165,5.79e-12,29;UBERON:0000930,5.79e-12,29;UBERON:0000365,6.26e-11,5;UBERON:0000344,2.40e-10,20;UBERON:0000153,4.41e-10,62;UBERON:0007811,4.41e-10,62;UBERON:0001007,4.57e-10,145;UBERON:0001555,4.57e-10,145;UBERON:0007026,4.57e-10,145;UBERON:0003124,4.66e-10,7;UBERON:0004923,2.43e-09,66;UBERON:0005910,4.99e-09,6;UBERON:0007196,1.50e-08,15;UBERON:0001558,1.50e-08,15;UBERON:0001987,2.21e-08,4;UBERON:0004340,2.21e-08,4;UBERON:0000478,2.32e-08,24;UBERON:0000033,3.22e-08,56;UBERON:0003126,4.00e-08,7;UBERON:0001005,4.00e-08,7;UBERON:0001444,9.96e-08,49;UBERON:0004815,1.34e-07,3;UBERON:0002031,1.34e-07,3;UBERON:0001949,2.74e-07,3;UBERON:0003729,4.74e-07,13;UBERON:0000974,7.17e-07,10;UBERON:0004921,8.41e-07,118;UBERON:0000065,9.18e-07,54|phase1_expression=0,0,0,0,0,0,0,0,0,0,1.39560233594486,1.09220686065086,0.791300934685361,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0,0,1.23852898652861,185.723087344743,79.518362557458,52.5050694436839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,93.2315234055388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.175669571386252,27.5056058545197,63.0230848746098,30.0335398655388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0.225222960966644,0,0,0.183201743930407,0,0,171.821056544159,0,0,0,0,1.06400514659507,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,142.43324878135,60.2768926505745,8.60413786167011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110293972732394,0,0,0.269662616320329,0,0,0,0,0,0,0,0,0,0,0,0,21.8403067963165,37.0925785750145,0.603173834469785,31.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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=6707 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11268 | |||
|TSSclassifier=N | |||
|UniProt=Q9UBC9,B1AN48 | |||
|association_with_transcript=0bp_to_ENST00000331860,ENST00000443178,ENST00000495845,NM_001097589,NM_005416,uc001fax.3,uc001fay.2,uc001faz.3_5end | |||
|coexpression_cluster_id=C60 | |||
|description=CAGE_peak_1_at_SPRR3_5end | |||
|id=chr1:152974218..152974231,+ | |||
|ontology_enrichment_celltype=CL:0002076!3.26e-15!43;CL:0000066!4.73e-11!254;CL:0000223!1.10e-10!59;CL:0002368!1.94e-10!13;CL:0002159!3.59e-09!13;CL:0002251!3.91e-09!21;CL:0000622!5.40e-08!5;CL:0000244!9.29e-07!4;CL:0000731!9.29e-07!4 | |||
|ontology_enrichment_celltype_v019=CL:0002076;6.24e-19;42!CL:0002368;1.61e-15;13!CL:0002251;4.59e-13;20!CL:0000622;3.21e-11;5!CL:0000244;2.31e-09;4!CL:0000731;2.31e-09;4!CL:0000154;2.89e-09;6!CL:0002202;1.35e-08;9!CL:0002632;1.35e-08;9!CL:0002159;2.07e-08;14!CL:0002623;6.65e-08;3!CL:0002328;1.34e-07;3!CL:0000307;2.07e-07;3!CL:0000349;2.31e-07;19!CL:0002621;2.74e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,1.23e-23,42;CL:0000223,1.58e-16,58;CL:0002368,1.64e-15,13;CL:0002251,4.54e-13,20;CL:0000622,3.24e-11,5;CL:0000066,6.63e-10,253;CL:0000244,2.28e-09,4;CL:0000731,2.28e-09,4;CL:0000154,2.91e-09,6;CL:0002202,1.37e-08,9;CL:0002632,1.37e-08,9;CL:0002159,2.08e-08,14;CL:0002623,6.73e-08,3;CL:0002328,1.34e-07,3;CL:0000068,2.12e-07,3;CL:0000069,2.12e-07,3;CL:0000307,2.12e-07,3;CL:0000377,2.12e-07,3;CL:0000349,2.31e-07,19;CL:0002621,2.74e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000223;1.13e-08;58!CL:0000377;2.07e-07;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!3.86e-19!169;UBERON:0000925!3.86e-19!169;UBERON:0006595!3.86e-19!169;UBERON:0001004!2.16e-17!72;UBERON:0000161!3.55e-13!35;UBERON:0000166!7.76e-13!21;UBERON:0005631!1.86e-12!14;UBERON:0000158!1.86e-12!14;UBERON:0001007!5.57e-12!155;UBERON:0001555!5.57e-12!155;UBERON:0007026!5.57e-12!155;UBERON:0000165!6.83e-10!28;UBERON:0000930!6.83e-10!28;UBERON:0000065!1.26e-09!53;UBERON:0000077!1.90e-09!130;UBERON:0003124!2.94e-09!7;UBERON:0004921!2.52e-08!129;UBERON:0004185!2.52e-08!129;UBERON:0000064!4.74e-08!219;UBERON:0000365!8.37e-08!5;UBERON:0000464!1.06e-07!104;UBERON:0005181!3.02e-07!35;UBERON:0000468!3.10e-07!659;UBERON:0000478!3.58e-07!24;UBERON:0000062!5.34e-07!511;UBERON:0001444!7.98e-07!48 | |||
|ontology_enrichment_uberon_v019=UBERON:0000165;1.59e-12;28!UBERON:0000161;5.93e-12;19!UBERON:0000166;5.93e-12;19!UBERON:0000365;6.39e-11;5!UBERON:0000486;1.75e-10;12!UBERON:0000344;2.53e-10;20!UBERON:0005910;5.07e-09;6!UBERON:0000974;1.14e-08;6!UBERON:0007196;1.49e-08;15!UBERON:0001558;1.49e-08;15!UBERON:0000478;2.33e-08;24!UBERON:0001987;2.38e-08;4!UBERON:0003126;3.97e-08;7!UBERON:0001005;3.97e-08;7!UBERON:0004815;1.34e-07;3!UBERON:0002031;1.34e-07;3!UBERON:0005631;2.65e-07;10!UBERON:0000158;2.65e-07;10!UBERON:0001949;2.74e-07;3!UBERON:0001041;3.81e-07;14!UBERON:0003729;4.76e-07;13 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,8.09e-19,160;UBERON:0000925,8.09e-19,160;UBERON:0006595,8.09e-19,160;UBERON:0000161,5.41e-17,36;UBERON:0000166,1.55e-14,22;UBERON:0001004,2.88e-13,74;UBERON:0005631,3.35e-13,14;UBERON:0000158,3.35e-13,14;UBERON:0003102,3.29e-12,99;UBERON:0000165,5.79e-12,29;UBERON:0000930,5.79e-12,29;UBERON:0000365,6.26e-11,5;UBERON:0000344,2.40e-10,20;UBERON:0000153,4.41e-10,62;UBERON:0007811,4.41e-10,62;UBERON:0001007,4.57e-10,145;UBERON:0001555,4.57e-10,145;UBERON:0007026,4.57e-10,145;UBERON:0003124,4.66e-10,7;UBERON:0004923,2.43e-09,66;UBERON:0005910,4.99e-09,6;UBERON:0007196,1.50e-08,15;UBERON:0001558,1.50e-08,15;UBERON:0001987,2.21e-08,4;UBERON:0004340,2.21e-08,4;UBERON:0000478,2.32e-08,24;UBERON:0000033,3.22e-08,56;UBERON:0003126,4.00e-08,7;UBERON:0001005,4.00e-08,7;UBERON:0001444,9.96e-08,49;UBERON:0004815,1.34e-07,3;UBERON:0002031,1.34e-07,3;UBERON:0001949,2.74e-07,3;UBERON:0003729,4.74e-07,13;UBERON:0000974,7.17e-07,10;UBERON:0004921,8.41e-07,118;UBERON:0000065,9.18e-07,54 | |||
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|short_description=p1@SPRR3 | |||
}} |
Revision as of 00:27, 12 September 2013
Short description: | p1@SPRR3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_SPRR3_5end |
Coexpression cluster: | C60_esophagus_tonsil_throat_tongue_uterus_cervix_cervical |
Association with transcript: | 0bp_to_ENST00000331860, ENST00000443178, ENST00000495845, NM_001097589, NM_005416, uc001fax.3, uc001fay.2, uc001faz.3_5end |
EntrezGene: | SPRR3 |
HGNC: | 11268 |
UniProt: | Q9UBC9B1AN48 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 1.23e-23 | 42 |
endodermal cell | 1.58e-16 | 58 |
respiratory epithelial cell | 1.64e-15 | 13 |
epithelial cell of alimentary canal | 4.54e-13 | 20 |
acinar cell | 3.24e-11 | 5 |
epithelial cell | 6.63e-10 | 253 |
transitional epithelial cell | 2.28e-09 | 4 |
urothelial cell | 2.28e-09 | 4 |
protein secreting cell | 2.91e-09 | 6 |
epithelial cell of tracheobronchial tree | 1.37e-08 | 9 |
epithelial cell of lower respiratory tract | 1.37e-08 | 9 |
general ecto-epithelial cell | 2.08e-08 | 14 |
acinar cell of salivary gland | 6.73e-08 | 3 |
bronchial epithelial cell | 1.34e-07 | 3 |
duct epithelial cell | 2.12e-07 | 3 |
branched duct epithelial cell | 2.12e-07 | 3 |
tracheal epithelial cell | 2.12e-07 | 3 |
tracheoblast | 2.12e-07 | 3 |
extraembryonic cell | 2.31e-07 | 19 |
gingival epithelial cell | 2.74e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 8.09e-19 | 160 |
endoderm | 8.09e-19 | 160 |
presumptive endoderm | 8.09e-19 | 160 |
orifice | 5.41e-17 | 36 |
oral opening | 1.55e-14 | 22 |
respiratory system | 2.88e-13 | 74 |
extraembryonic membrane | 3.35e-13 | 14 |
membranous layer | 3.35e-13 | 14 |
surface structure | 3.29e-12 | 99 |
mouth | 5.79e-12 | 29 |
stomodeum | 5.79e-12 | 29 |
urothelium | 6.26e-11 | 5 |
mucosa | 2.40e-10 | 20 |
anterior region of body | 4.41e-10 | 62 |
craniocervical region | 4.41e-10 | 62 |
digestive system | 4.57e-10 | 145 |
digestive tract | 4.57e-10 | 145 |
primitive gut | 4.57e-10 | 145 |
chorion | 4.66e-10 | 7 |
organ component layer | 2.43e-09 | 66 |
transitional epithelium | 4.99e-09 | 6 |
tracheobronchial tree | 1.50e-08 | 15 |
lower respiratory tract | 1.50e-08 | 15 |
placenta | 2.21e-08 | 4 |
allantois | 2.21e-08 | 4 |
extraembryonic structure | 2.32e-08 | 24 |
head | 3.22e-08 | 56 |
trachea | 4.00e-08 | 7 |
respiratory airway | 4.00e-08 | 7 |
subdivision of head | 9.96e-08 | 49 |
lower respiratory tract epithelium | 1.34e-07 | 3 |
epithelium of bronchus | 1.34e-07 | 3 |
gingival epithelium | 2.74e-07 | 3 |
mouth mucosa | 4.74e-07 | 13 |
neck | 7.17e-07 | 10 |
subdivision of digestive tract | 8.41e-07 | 118 |
respiratory tract | 9.18e-07 | 54 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.