FFCP PHASE1:Hg19::chr19:4302375..4302406,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=126259|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=28324|TSSclassifier=S|UniProt=Q96BF3|association_with_transcript=21bp_to_ENST00000301272,NM_001169126,NM_144615,uc002lzx.1,uc010dtv.1_5end|coexpression_cluster_id=C1213|description=CAGE_peak_1_at_TMIGD2_5end|id=chr19:4302375..4302406,-|ontology_enrichment_celltype=CL:0000791!2.99e-20!18;CL:0000789!2.99e-20!18;CL:0002420!2.99e-20!18;CL:0002419!2.99e-20!18;CL:0000790!2.99e-20!18;CL:0000084!7.94e-18!25;CL:0000827!7.94e-18!25;CL:0000625!2.01e-13!11;CL:0000542!1.21e-11!53;CL:0000051!1.21e-11!53;CL:0000838!3.13e-11!52;CL:0000037!2.39e-08!172;CL:0000566!2.39e-08!172;CL:0000624!2.51e-07!6;CL:0000988!4.97e-07!182|ontology_enrichment_celltype_v019=CL:0000791;7.15e-34;18!CL:0000789;7.15e-34;18!CL:0002419;7.15e-34;18!CL:0000084;1.55e-29;25!CL:0000625;1.02e-22;11!CL:0000624;1.60e-10;6!CL:0000784;2.49e-09;3!CL:0000542;2.20e-08;53!CL:0000226;4.61e-08;3!CL:0000623;4.61e-08;3!CL:0000842;4.61e-08;3!CL:0000767;1.55e-07;3|ontology_enrichment_celltype_v019_2=CL:0000791,6.72e-34,18;CL:0000789,6.72e-34,18;CL:0002420,6.72e-34,18;CL:0002419,6.72e-34,18;CL:0000790,6.72e-34,18;CL:0000084,1.55e-29,25;CL:0000827,1.55e-29,25;CL:0000625,9.03e-23,11;CL:0000838,2.15e-16,52;CL:0000542,5.64e-16,53;CL:0000051,5.64e-16,53;CL:0000037,1.51e-11,168;CL:0000624,1.67e-10,6;CL:0000988,1.77e-10,177;CL:0000738,2.35e-10,136;CL:0000784,2.56e-09,3;CL:0002087,8.75e-09,115;CL:0000623,3.88e-08,3;CL:0000825,3.88e-08,3;CL:0000226,5.21e-08,3;CL:0000842,5.21e-08,3;CL:0000767,1.46e-07,3;CL:0002032,1.67e-07,161;CL:0000837,1.67e-07,161|ontology_enrichment_development_v019=CL:0000790;7.15e-34;18!CL:0000051;2.20e-08;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!1.50e-21!115;UBERON:0001049!9.12e-11!57;UBERON:0005068!9.12e-11!57;UBERON:0006241!9.12e-11!57;UBERON:0007135!9.12e-11!57;UBERON:0000178!5.10e-10!15;UBERON:0000179!5.10e-10!15;UBERON:0000463!5.10e-10!15;UBERON:0001893!7.26e-09!34;UBERON:0002020!1.29e-08!34;UBERON:0003528!1.29e-08!34;UBERON:0002791!2.37e-08!33;UBERON:0002780!4.74e-08!41;UBERON:0001890!4.74e-08!41;UBERON:0006240!4.74e-08!41;UBERON:0002616!8.66e-08!59;UBERON:0001017!1.01e-07!82;UBERON:0003080!1.04e-07!42;UBERON:0001869!1.07e-07!32;UBERON:0005743!2.11e-07!86;UBERON:0002619!3.22e-07!22;UBERON:0000955!6.15e-07!69;UBERON:0006238!6.15e-07!69;UBERON:0002346!6.33e-07!90;UBERON:0000956!8.84e-07!25;UBERON:0000203!8.84e-07!25;UBERON:0004177!9.91e-07!7|ontology_enrichment_uberon_v019=UBERON:0000178;8.64e-21;15!UBERON:0000179;8.64e-21;15!UBERON:0000463;8.64e-21;15!UBERON:0002390;5.97e-19;32!UBERON:0002193;1.08e-12;42!UBERON:0004177;1.46e-08;5!UBERON:0005057;1.46e-08;5!UBERON:0002370;7.32e-07;2!UBERON:0005058;7.32e-07;2!UBERON:0009113;7.32e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0000178,7.05e-21,15;UBERON:0000179,7.05e-21,15;UBERON:0000463,7.05e-21,15;UBERON:0004177,4.91e-13,7;UBERON:0005057,4.91e-13,7;UBERON:0002370,1.42e-11,4;UBERON:0005058,1.42e-11,4;UBERON:0009113,1.42e-11,4;UBERON:0003295,1.42e-11,4;UBERON:0005562,1.42e-11,4;UBERON:0003351,1.13e-07,6;UBERON:0002193,1.31e-07,108;UBERON:0002390,2.66e-07,98;UBERON:0003061,2.66e-07,98|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0,0,0,1.96682138424452,3.0706351847777,2.16742572642506,0,0,0,0.0774672005803016,0,21.139231632109,2.21598163412751,0.200544447470142,1.51907609501096,0.223915474239924,0.647787332037959,0.257575567634187,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0.546138611262131,0,0,0.400395987036012,0,0,0,0,0,0.382273228125229,5.28685314316103,2.80254281490768,5.00429761072646,6.49142241375649,4.32311839024081,2.05601498999509,1.33749196312542,5.86660079940463,10.4158517261641,7.79306913631645,0.557052284425868,0.294605907474837,0.221533894583621,0,1.0247305578054,0.780356085359269,4.1109476150919,2.21080014228679,5.21645554323094,16.9046682004749,17.3901538258314,13.589618094647,2.94604291013672,6.89796888483458,4.46715679127419,0.759059076058509,11.1497895013434,8.46408490013344,10.4549724889321,12.6483100025329,8.19114311388278,7.49584359314075,6.86654030927649,4.92676798152628,5.44338206706778,0.534880391567015,6.22744936696036,0,0,0,0,0,0,0,0,0,0,0,0.196468613246569,0,0,0,0.174129737299267,0,19.3177405687327,28.0277506282263,19.3157900691374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243947412259191,0,0.348581828608555,0.621966330092223,0.252320850875628,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.088048434013226,0.207328115540772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.28553435957927,10.836691811106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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=126259 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28324 | |||
|TSSclassifier=S | |||
|UniProt=Q96BF3 | |||
|association_with_transcript=21bp_to_ENST00000301272,NM_001169126,NM_144615,uc002lzx.1,uc010dtv.1_5end | |||
|coexpression_cluster_id=C1213 | |||
|description=CAGE_peak_1_at_TMIGD2_5end | |||
|id=chr19:4302375..4302406,- | |||
|ontology_enrichment_celltype=CL:0000791!2.99e-20!18;CL:0000789!2.99e-20!18;CL:0002420!2.99e-20!18;CL:0002419!2.99e-20!18;CL:0000790!2.99e-20!18;CL:0000084!7.94e-18!25;CL:0000827!7.94e-18!25;CL:0000625!2.01e-13!11;CL:0000542!1.21e-11!53;CL:0000051!1.21e-11!53;CL:0000838!3.13e-11!52;CL:0000037!2.39e-08!172;CL:0000566!2.39e-08!172;CL:0000624!2.51e-07!6;CL:0000988!4.97e-07!182 | |||
|ontology_enrichment_celltype_v019=CL:0000791;7.15e-34;18!CL:0000789;7.15e-34;18!CL:0002419;7.15e-34;18!CL:0000084;1.55e-29;25!CL:0000625;1.02e-22;11!CL:0000624;1.60e-10;6!CL:0000784;2.49e-09;3!CL:0000542;2.20e-08;53!CL:0000226;4.61e-08;3!CL:0000623;4.61e-08;3!CL:0000842;4.61e-08;3!CL:0000767;1.55e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,6.72e-34,18;CL:0000789,6.72e-34,18;CL:0002420,6.72e-34,18;CL:0002419,6.72e-34,18;CL:0000790,6.72e-34,18;CL:0000084,1.55e-29,25;CL:0000827,1.55e-29,25;CL:0000625,9.03e-23,11;CL:0000838,2.15e-16,52;CL:0000542,5.64e-16,53;CL:0000051,5.64e-16,53;CL:0000037,1.51e-11,168;CL:0000624,1.67e-10,6;CL:0000988,1.77e-10,177;CL:0000738,2.35e-10,136;CL:0000784,2.56e-09,3;CL:0002087,8.75e-09,115;CL:0000623,3.88e-08,3;CL:0000825,3.88e-08,3;CL:0000226,5.21e-08,3;CL:0000842,5.21e-08,3;CL:0000767,1.46e-07,3;CL:0002032,1.67e-07,161;CL:0000837,1.67e-07,161 | |||
|ontology_enrichment_development_v019=CL:0000790;7.15e-34;18!CL:0000051;2.20e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.50e-21!115;UBERON:0001049!9.12e-11!57;UBERON:0005068!9.12e-11!57;UBERON:0006241!9.12e-11!57;UBERON:0007135!9.12e-11!57;UBERON:0000178!5.10e-10!15;UBERON:0000179!5.10e-10!15;UBERON:0000463!5.10e-10!15;UBERON:0001893!7.26e-09!34;UBERON:0002020!1.29e-08!34;UBERON:0003528!1.29e-08!34;UBERON:0002791!2.37e-08!33;UBERON:0002780!4.74e-08!41;UBERON:0001890!4.74e-08!41;UBERON:0006240!4.74e-08!41;UBERON:0002616!8.66e-08!59;UBERON:0001017!1.01e-07!82;UBERON:0003080!1.04e-07!42;UBERON:0001869!1.07e-07!32;UBERON:0005743!2.11e-07!86;UBERON:0002619!3.22e-07!22;UBERON:0000955!6.15e-07!69;UBERON:0006238!6.15e-07!69;UBERON:0002346!6.33e-07!90;UBERON:0000956!8.84e-07!25;UBERON:0000203!8.84e-07!25;UBERON:0004177!9.91e-07!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;8.64e-21;15!UBERON:0000179;8.64e-21;15!UBERON:0000463;8.64e-21;15!UBERON:0002390;5.97e-19;32!UBERON:0002193;1.08e-12;42!UBERON:0004177;1.46e-08;5!UBERON:0005057;1.46e-08;5!UBERON:0002370;7.32e-07;2!UBERON:0005058;7.32e-07;2!UBERON:0009113;7.32e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,7.05e-21,15;UBERON:0000179,7.05e-21,15;UBERON:0000463,7.05e-21,15;UBERON:0004177,4.91e-13,7;UBERON:0005057,4.91e-13,7;UBERON:0002370,1.42e-11,4;UBERON:0005058,1.42e-11,4;UBERON:0009113,1.42e-11,4;UBERON:0003295,1.42e-11,4;UBERON:0005562,1.42e-11,4;UBERON:0003351,1.13e-07,6;UBERON:0002193,1.31e-07,108;UBERON:0002390,2.66e-07,98;UBERON:0003061,2.66e-07,98 | |||
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| |||
|short_description=p1@TMIGD2 | |||
}} |
Revision as of 20:57, 11 September 2013
Short description: | p1@TMIGD2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_TMIGD2_5end |
Coexpression cluster: | C1213_thymus_Dendritic_CD4_non_chronic_vein_CD133 |
Association with transcript: | 21bp_to_ENST00000301272, NM_001169126, NM_144615, uc002lzx.1, uc010dtv.1_5end |
EntrezGene: | TMIGD2 |
HGNC: | 28324 |
UniProt: | Q96BF3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 6.72e-34 | 18 |
alpha-beta T cell | 6.72e-34 | 18 |
immature T cell | 6.72e-34 | 18 |
mature T cell | 6.72e-34 | 18 |
immature alpha-beta T cell | 6.72e-34 | 18 |
T cell | 1.55e-29 | 25 |
pro-T cell | 1.55e-29 | 25 |
CD8-positive, alpha-beta T cell | 9.03e-23 | 11 |
lymphoid lineage restricted progenitor cell | 2.15e-16 | 52 |
lymphocyte | 5.64e-16 | 53 |
common lymphoid progenitor | 5.64e-16 | 53 |
hematopoietic stem cell | 1.51e-11 | 168 |
CD4-positive, alpha-beta T cell | 1.67e-10 | 6 |
hematopoietic cell | 1.77e-10 | 177 |
leukocyte | 2.35e-10 | 136 |
plasmacytoid dendritic cell | 2.56e-09 | 3 |
nongranular leukocyte | 8.75e-09 | 115 |
natural killer cell | 3.88e-08 | 3 |
pro-NK cell | 3.88e-08 | 3 |
single nucleate cell | 5.21e-08 | 3 |
mononuclear cell | 5.21e-08 | 3 |
basophil | 1.46e-07 | 3 |
hematopoietic oligopotent progenitor cell | 1.67e-07 | 161 |
hematopoietic multipotent progenitor cell | 1.67e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
blood | 7.05e-21 | 15 |
haemolymphatic fluid | 7.05e-21 | 15 |
organism substance | 7.05e-21 | 15 |
hemopoietic organ | 4.91e-13 | 7 |
immune organ | 4.91e-13 | 7 |
thymus | 1.42e-11 | 4 |
hemolymphoid system gland | 1.42e-11 | 4 |
thymic region | 1.42e-11 | 4 |
pharyngeal gland | 1.42e-11 | 4 |
thymus primordium | 1.42e-11 | 4 |
pharyngeal epithelium | 1.13e-07 | 6 |
hemolymphoid system | 1.31e-07 | 108 |
hematopoietic system | 2.66e-07 | 98 |
blood island | 2.66e-07 | 98 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.