FFCP PHASE1:Hg19::chr19:42400575..42400597,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=9138|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=681|TSSclassifier=N|UniProt=|association_with_transcript=-495bp_to_uc002osd.2_5end|coexpression_cluster_id=C1823|description=CAGE_peak_10_at_ARHGEF1_5end|id=chr19:42400575..42400597,+|ontology_enrichment_celltype=CL:0002032!8.57e-14!165;CL:0000837!8.57e-14!165;CL:0000037!1.01e-13!172;CL:0000566!1.01e-13!172;CL:0000988!4.92e-12!182;CL:0000738!3.74e-10!140;CL:0002087!4.63e-10!119;CL:0002031!9.19e-09!124;CL:0000542!6.03e-08!53;CL:0000051!6.03e-08!53;CL:0000838!7.44e-08!52;CL:0000763!5.89e-07!112;CL:0000049!5.89e-07!112|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=CL:0000226,8.28e-07,3;CL:0000842,8.28e-07,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:1240!5.11e-07!39;DOID:2531!5.41e-07!51;DOID:0060083!5.41e-07!51|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!3.17e-21!115;UBERON:0001049!1.79e-16!57;UBERON:0005068!1.79e-16!57;UBERON:0006241!1.79e-16!57;UBERON:0007135!1.79e-16!57;UBERON:0000955!5.64e-14!69;UBERON:0006238!5.64e-14!69;UBERON:0002616!1.43e-13!59;UBERON:0002780!3.95e-13!41;UBERON:0001890!3.95e-13!41;UBERON:0006240!3.95e-13!41;UBERON:0001017!6.34e-13!82;UBERON:0003080!2.19e-12!42;UBERON:0005743!7.38e-12!86;UBERON:0000073!1.93e-11!94;UBERON:0001016!1.93e-11!94;UBERON:0002020!1.40e-10!34;UBERON:0003528!1.40e-10!34;UBERON:0002791!3.17e-10!33;UBERON:0002346!4.43e-10!90;UBERON:0001893!4.69e-10!34;UBERON:0003075!3.02e-09!86;UBERON:0007284!3.02e-09!86;UBERON:0001869!5.66e-09!32;UBERON:0000178!2.42e-08!15;UBERON:0000179!2.42e-08!15;UBERON:0000463!2.42e-08!15;UBERON:0002619!6.44e-08!22;UBERON:0000956!3.26e-07!25;UBERON:0000203!3.26e-07!25;UBERON:0001950!3.33e-07!20|ontology_enrichment_uberon_v019=UBERON:0000178;2.49e-15;15!UBERON:0000179;2.49e-15;15!UBERON:0000463;2.49e-15;15!UBERON:0000073;1.18e-09;53!UBERON:0002616;1.18e-09;53!UBERON:0002780;8.87e-09;41!UBERON:0001890;8.87e-09;41!UBERON:0001894;1.26e-08;7!UBERON:0002390;1.69e-07;32!UBERON:0002784;2.10e-07;4!UBERON:0003296;2.96e-07;4!UBERON:0010133;2.96e-07;4|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.25e-18,56;UBERON:0005068,1.25e-18,56;UBERON:0006241,1.25e-18,56;UBERON:0007135,1.25e-18,56;UBERON:0007023,3.43e-18,114;UBERON:0000178,1.08e-15,15;UBERON:0000179,1.08e-15,15;UBERON:0000463,1.08e-15,15;UBERON:0000073,2.01e-15,53;UBERON:0002616,2.01e-15,53;UBERON:0002346,2.59e-14,86;UBERON:0003075,2.66e-14,82;UBERON:0007284,2.66e-14,82;UBERON:0001017,3.43e-13,81;UBERON:0000955,2.08e-12,68;UBERON:0006238,2.08e-12,68;UBERON:0002780,3.26e-12,41;UBERON:0001890,3.26e-12,41;UBERON:0003080,3.26e-12,41;UBERON:0006240,3.26e-12,41;UBERON:0001016,4.92e-12,89;UBERON:0010371,2.12e-09,104;UBERON:0001894,7.30e-09,7;UBERON:0006222,7.30e-09,7;UBERON:0003528,5.04e-08,34;UBERON:0002020,5.04e-08,34;UBERON:0003076,5.98e-08,15;UBERON:0003057,5.98e-08,15;UBERON:0002784,1.35e-07,4;UBERON:0003056,1.85e-07,61;UBERON:0003296,2.00e-07,4;UBERON:0010133,2.00e-07,4;UBERON:0001893,4.41e-07,34;UBERON:0002298,8.07e-07,6|phase1_expression=0,0.428201047781966,0.281908808191942,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0.313454721478088,0.286235987131057,0,0.376627918784408,0.993374274723366,1.14940825229924,0.472264687882075,0,0.383829398097213,0.309632246632152,0,0,0,0.619737604642413,1.56386155736164,0,1.10799081706375,2.20598892217156,1.30206522429511,0.671746422719773,1.29557466407592,0.77272670290256,1.74477886535478,0.755751887377619,0,0.697287110717054,0.822335776043652,0.309706370895104,0,0.256160706529101,0,0.344745680736619,0,0,1.69418105588344,0.545812300115692,0.449446968890169,0.306083892370903,0,0.639337125799041,0.659702600373432,0.398927315243264,0.426224750532694,0.290209238628584,0,0.622822248995575,0.502497330513487,0.521482918420201,0.65156653411535,0,0,0.316462387440884,0.211255286311942,0.637812899895131,0,0.898629049171961,0.901061357049038,2.25015821375912,0,0.59675003159727,0.547992461293902,0,0,0,0.853460445133014,0.800791974072025,0,0,0,1.1384259382189,0.587237189370939,1.91136614062614,0,0,0.526768169550154,3.14735632182133,4.32311839024081,2.87842098599313,2.50779743086017,0.651844533267181,1.89379122293893,0,1.89397776704795,0.294605907474837,0.221533894583621,2.43723477388514,2.94610035369053,3.90178042679635,4.27538551969558,2.76350017785848,3.18783394308558,1.63115219478266,1.87278579662799,6.27213142829861,2.83273356743915,0,0.34362744548263,5.31341353240956,0,0.651083453856419,0.950452044448374,0.451725357233318,0.895906278080929,1.24930726552346,0.236777252044017,0,2.21767417547206,3.20928234940209,4.19990771260117,0,0,0,0.722878304769133,0,0.724232594804119,0,0,0.189069634328136,0,0.175669571386252,0.458426764241994,0,0,0,0,0.398873881556595,0.238490624305342,0,0,0,0,0,0,0.419499436209906,0.275118041940067,0,0.258416759169329,0,0,0,0,0.24406205754817,0.367663080345869,0,0.0892997282840798,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=9138 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=681 | |||
|TSSclassifier=N | |||
|UniProt= | |||
|association_with_transcript=-495bp_to_uc002osd.2_5end | |||
|coexpression_cluster_id=C1823 | |||
|description=CAGE_peak_10_at_ARHGEF1_5end | |||
|id=chr19:42400575..42400597,+ | |||
|ontology_enrichment_celltype=CL:0002032!8.57e-14!165;CL:0000837!8.57e-14!165;CL:0000037!1.01e-13!172;CL:0000566!1.01e-13!172;CL:0000988!4.92e-12!182;CL:0000738!3.74e-10!140;CL:0002087!4.63e-10!119;CL:0002031!9.19e-09!124;CL:0000542!6.03e-08!53;CL:0000051!6.03e-08!53;CL:0000838!7.44e-08!52;CL:0000763!5.89e-07!112;CL:0000049!5.89e-07!112 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000226,8.28e-07,3;CL:0000842,8.28e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1240!5.11e-07!39;DOID:2531!5.41e-07!51;DOID:0060083!5.41e-07!51 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.17e-21!115;UBERON:0001049!1.79e-16!57;UBERON:0005068!1.79e-16!57;UBERON:0006241!1.79e-16!57;UBERON:0007135!1.79e-16!57;UBERON:0000955!5.64e-14!69;UBERON:0006238!5.64e-14!69;UBERON:0002616!1.43e-13!59;UBERON:0002780!3.95e-13!41;UBERON:0001890!3.95e-13!41;UBERON:0006240!3.95e-13!41;UBERON:0001017!6.34e-13!82;UBERON:0003080!2.19e-12!42;UBERON:0005743!7.38e-12!86;UBERON:0000073!1.93e-11!94;UBERON:0001016!1.93e-11!94;UBERON:0002020!1.40e-10!34;UBERON:0003528!1.40e-10!34;UBERON:0002791!3.17e-10!33;UBERON:0002346!4.43e-10!90;UBERON:0001893!4.69e-10!34;UBERON:0003075!3.02e-09!86;UBERON:0007284!3.02e-09!86;UBERON:0001869!5.66e-09!32;UBERON:0000178!2.42e-08!15;UBERON:0000179!2.42e-08!15;UBERON:0000463!2.42e-08!15;UBERON:0002619!6.44e-08!22;UBERON:0000956!3.26e-07!25;UBERON:0000203!3.26e-07!25;UBERON:0001950!3.33e-07!20 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.49e-15;15!UBERON:0000179;2.49e-15;15!UBERON:0000463;2.49e-15;15!UBERON:0000073;1.18e-09;53!UBERON:0002616;1.18e-09;53!UBERON:0002780;8.87e-09;41!UBERON:0001890;8.87e-09;41!UBERON:0001894;1.26e-08;7!UBERON:0002390;1.69e-07;32!UBERON:0002784;2.10e-07;4!UBERON:0003296;2.96e-07;4!UBERON:0010133;2.96e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.25e-18,56;UBERON:0005068,1.25e-18,56;UBERON:0006241,1.25e-18,56;UBERON:0007135,1.25e-18,56;UBERON:0007023,3.43e-18,114;UBERON:0000178,1.08e-15,15;UBERON:0000179,1.08e-15,15;UBERON:0000463,1.08e-15,15;UBERON:0000073,2.01e-15,53;UBERON:0002616,2.01e-15,53;UBERON:0002346,2.59e-14,86;UBERON:0003075,2.66e-14,82;UBERON:0007284,2.66e-14,82;UBERON:0001017,3.43e-13,81;UBERON:0000955,2.08e-12,68;UBERON:0006238,2.08e-12,68;UBERON:0002780,3.26e-12,41;UBERON:0001890,3.26e-12,41;UBERON:0003080,3.26e-12,41;UBERON:0006240,3.26e-12,41;UBERON:0001016,4.92e-12,89;UBERON:0010371,2.12e-09,104;UBERON:0001894,7.30e-09,7;UBERON:0006222,7.30e-09,7;UBERON:0003528,5.04e-08,34;UBERON:0002020,5.04e-08,34;UBERON:0003076,5.98e-08,15;UBERON:0003057,5.98e-08,15;UBERON:0002784,1.35e-07,4;UBERON:0003056,1.85e-07,61;UBERON:0003296,2.00e-07,4;UBERON:0010133,2.00e-07,4;UBERON:0001893,4.41e-07,34;UBERON:0002298,8.07e-07,6 | |||
|phase1_expression=0,0.428201047781966,0.281908808191942,0,0,0,0,0,0,0,0,0.218441372130172,0,0,0,0,0,0,0,0,0,0.313454721478088,0.286235987131057,0,0.376627918784408,0.993374274723366,1.14940825229924,0.472264687882075,0,0.383829398097213,0.309632246632152,0,0,0,0.619737604642413,1.56386155736164,0,1.10799081706375,2.20598892217156,1.30206522429511,0.671746422719773,1.29557466407592,0.77272670290256,1.74477886535478,0.755751887377619,0,0.697287110717054,0.822335776043652,0.309706370895104,0,0.256160706529101,0,0.344745680736619,0,0,1.69418105588344,0.545812300115692,0.449446968890169,0.306083892370903,0,0.639337125799041,0.659702600373432,0.398927315243264,0.426224750532694,0.290209238628584,0,0.622822248995575,0.502497330513487,0.521482918420201,0.65156653411535,0,0,0.316462387440884,0.211255286311942,0.637812899895131,0,0.898629049171961,0.901061357049038,2.25015821375912,0,0.59675003159727,0.547992461293902,0,0,0,0.853460445133014,0.800791974072025,0,0,0,1.1384259382189,0.587237189370939,1.91136614062614,0,0,0.526768169550154,3.14735632182133,4.32311839024081,2.87842098599313,2.50779743086017,0.651844533267181,1.89379122293893,0,1.89397776704795,0.294605907474837,0.221533894583621,2.43723477388514,2.94610035369053,3.90178042679635,4.27538551969558,2.76350017785848,3.18783394308558,1.63115219478266,1.87278579662799,6.27213142829861,2.83273356743915,0,0.34362744548263,5.31341353240956,0,0.651083453856419,0.950452044448374,0.451725357233318,0.895906278080929,1.24930726552346,0.236777252044017,0,2.21767417547206,3.20928234940209,4.19990771260117,0,0,0,0.722878304769133,0,0.724232594804119,0,0,0.189069634328136,0,0.175669571386252,0.458426764241994,0,0,0,0,0.398873881556595,0.238490624305342,0,0,0,0,0,0,0.419499436209906,0.275118041940067,0,0.258416759169329,0,0,0,0,0.24406205754817,0.367663080345869,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,1.05927344650575,0.860509862246441,0,0.560677600142307,0,0.24666754841716,0,0.134710672069688,0,0.151357427644931,0.576175924479999,0,0,0,0,0.117434498643765,0,0.140450806702248,0,0.245668634623536,0.206651562351531,0,0.494533858557114,0,0,0,0.250237039743928,0,0,0,0,0,0.717558542755448,0,0.635795703478686,0.600182192168805,0.103052529238439,0.772921620136887,0.18611685633159,0.843881661206331,0.0974370051611986,1.7670364197088,0,0.323292113637624,1.42003837006646,0.10075209822764,0.339121184620975,0,0.272746120590835,0,0.121973706129595,0.265059536642971,0.232387885739037,0.310983165046111,0,0,0,0.643240938192885,0,0.464367928031979,0,0.118306800039844,0.337169380156203,0.241011029883482,0.110293972732394,0.217879444092406,0,0.269662616320329,0,1.15424147083917,0,0,0,0,0,0,0.590789906681404,0,0.122988438543114,0,0.109750285408626,0,0.804231779293047,0.0925884451585296,0,0,0,0.115930404975077,0,0,0,0.190254152234598,0,0,0.492434012174795,0.234004265139238,0.297262324577456,0,0,0,0.0895585227028483,0,0,0.492663237895943,0.968532774145487,1.03664057770386,0.432359860250884,0.25248486685276,0.761974731506028,0,0,0,0.514137463516618,0.600686115687835,1.71495859578347,0.224262168690721,0,0.1466765716419,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0.399891964728228,0,0,0,0.239624855491583,0,0,0,0,0.179060963239896,0.224170287987055,2.75843064282698,1.94064817373566,2.31017465303547,0.254094624222463,0,1.54657762555539,0,0,5.24304916763028,5.9832291840805,0.828831026872071,0,0.500170521059677,0,0.623912584592421,0.713715955188647,0.315404830067869,0.35142424497814,0,0,0,0,0,0.260650843404249,0,0,4.54889657470352,2.80428461064202,2.98837161849644,0,0,0,0,0.306923946576125,0.561320188866147,0,0,0,0,0.308419387605311,0,0.164254312027618,0,0.232420756919918,0,0.200506470303285,0.0920809889358963,0,0.182091168006717,0,0,0,0,0,0,1.13733384070897,0,0,0,0,0,0,0,0.223874754722178,0,0.261435451024901,0,0,0,0.206082023295445,0.183138929636687,0.165018999841176,0,0,0,0.096670718292122,0,0,0,0.537101224341368,0,0,0.0890320356467374,0,0,2.04180339991335,0.30347334256665,0,0.94443704049192,0,0.308033580176089,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,1.52234282769651,2.29391162142713,1.70894156152249,2.1440859791201,2.87953591160336,1.94541993357815,2.70015718619057,4.75875105776562,0.106824071127473,0,0,0.371606350251437,1.15415370381156,1.9919716137556,0.478278818186467,0.997896857164083,0.383010740264733,2.75175657541048,0.324621940274555,1.12318871245384,1.14117339516596,0.626719583092093,10.0253790836027,0.50787533340481,0.481764225311099,0.80719882876419,0.851692475380653,1.37402137902306,0.614481528616916,0.671028323677248,0.500547425135725,0.586164286206121,0,0,0.811367035427949,0.66614393599564,4.22961015263549,0.18714054040822,0.146508179271894,0.121360521749513,0.222886768554957,0,0,0,0,0.994147647766298,0.703347082052564,0,0.494411622680279,0.63337622438398,0.398495976502139,0.828851746593443,0,0.306806047506464,1.10776324914963,0.3110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| |||
|short_description=p10@ARHGEF1 | |||
}} |
Revision as of 20:52, 11 September 2013
Short description: | p10@ARHGEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_ARHGEF1_5end |
Coexpression cluster: | C1823_acute_CD4_Neutrophils_thymus_Whole_CD8_duodenum |
Association with transcript: | -495bp_to_uc002osd.2_5end |
EntrezGene: | ARHGEF1 |
HGNC: | 681 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
single nucleate cell | 8.28e-07 | 3 |
mononuclear cell | 8.28e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
neural tube | 1.25e-18 | 56 |
neural rod | 1.25e-18 | 56 |
future spinal cord | 1.25e-18 | 56 |
neural keel | 1.25e-18 | 56 |
adult organism | 3.43e-18 | 114 |
blood | 1.08e-15 | 15 |
haemolymphatic fluid | 1.08e-15 | 15 |
organism substance | 1.08e-15 | 15 |
regional part of nervous system | 2.01e-15 | 53 |
regional part of brain | 2.01e-15 | 53 |
neurectoderm | 2.59e-14 | 86 |
neural plate | 2.66e-14 | 82 |
presumptive neural plate | 2.66e-14 | 82 |
central nervous system | 3.43e-13 | 81 |
brain | 2.08e-12 | 68 |
future brain | 2.08e-12 | 68 |
regional part of forebrain | 3.26e-12 | 41 |
forebrain | 3.26e-12 | 41 |
anterior neural tube | 3.26e-12 | 41 |
future forebrain | 3.26e-12 | 41 |
nervous system | 4.92e-12 | 89 |
ecto-epithelium | 2.12e-09 | 104 |
diencephalon | 7.30e-09 | 7 |
future diencephalon | 7.30e-09 | 7 |
brain grey matter | 5.04e-08 | 34 |
gray matter | 5.04e-08 | 34 |
posterior neural tube | 5.98e-08 | 15 |
chordal neural plate | 5.98e-08 | 15 |
regional part of diencephalon | 1.35e-07 | 4 |
pre-chordal neural plate | 1.85e-07 | 61 |
gland of diencephalon | 2.00e-07 | 4 |
neuroendocrine gland | 2.00e-07 | 4 |
telencephalon | 4.41e-07 | 34 |
brainstem | 8.07e-07 | 6 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.