FFCP PHASE1:Hg19::chr19:39687556..39687587,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=342897|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=33739|TSSclassifier=S|UniProt=Q6ZVX7|association_with_transcript=-16bp_to_ENST00000339852,NM_001001414,uc002okq.1_5end|coexpression_cluster_id=C61|description=CAGE_peak_2_at_NCCRP1_5end|id=chr19:39687556..39687587,+|ontology_enrichment_celltype=CL:0000066!1.94e-17!254;CL:0002076!7.64e-14!43;CL:0000147!6.64e-11!14;CL:0002368!1.45e-09!13;CL:0000148!2.74e-09!10;CL:0000541!2.74e-09!10;CL:0000223!1.60e-08!59;CL:0000150!2.16e-08!9;CL:0000990!5.93e-08!8;CL:0002077!6.10e-08!33;CL:0000453!2.93e-07!5;CL:0000622!4.71e-07!5;CL:0002322!7.52e-07!5;CL:1000507!8.09e-07!12;CL:1000494!8.09e-07!12|ontology_enrichment_celltype_v019=CL:0000148;2.57e-12;10!CL:0000453;3.68e-11;5!CL:0002368;5.03e-11;13!CL:0000150;5.82e-11;9!CL:0000147;9.33e-11;14!CL:0000622;1.08e-10;5!CL:0002322;1.89e-10;5!CL:0002077;1.34e-09;34!CL:0000154;7.84e-09;6!CL:0002076;9.22e-09;42!CL:0000075;2.02e-08;27!CL:0000244;3.55e-08;4!CL:0000731;3.55e-08;4!CL:0002202;7.81e-08;9!CL:0002632;7.81e-08;9!CL:0002328;3.75e-07;3!CL:0000710;6.34e-07;20!CL:1000507;6.53e-07;10!CL:1000494;6.53e-07;10|ontology_enrichment_celltype_v019_2=CL:0000066,4.81e-18,253;CL:0000148,2.43e-12,10;CL:0000541,2.43e-12,10;CL:0002076,2.49e-11,42;CL:0000453,3.32e-11,5;CL:0002368,4.43e-11,13;CL:0000150,4.80e-11,9;CL:0000622,7.39e-11,5;CL:0000147,9.02e-11,14;CL:0002322,1.62e-10,5;CL:0002077,1.72e-10,34;CL:0000154,5.74e-09,6;CL:0000075,1.94e-08,27;CL:0000244,3.85e-08,4;CL:0000731,3.85e-08,4;CL:0002202,8.09e-08,9;CL:0002632,8.09e-08,9;CL:0002328,3.88e-07,3;CL:0000223,5.46e-07,58;CL:0000710,6.28e-07,20;CL:1000507,6.36e-07,10;CL:1000494,6.36e-07,10;CL:0002623,6.67e-07,3|ontology_enrichment_development_v019=UBERON:0008947;6.20e-10;29|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001004!1.60e-20!72;UBERON:0000065!3.50e-20!53;UBERON:0004119!1.40e-16!169;UBERON:0000925!1.40e-16!169;UBERON:0006595!1.40e-16!169;UBERON:0000072!2.37e-15!46;UBERON:0008947!7.40e-15!38;UBERON:0003258!7.40e-15!38;UBERON:0001557!3.60e-13!19;UBERON:0001007!7.36e-13!155;UBERON:0001555!7.36e-13!155;UBERON:0007026!7.36e-13!155;UBERON:0001737!5.47e-12!9;UBERON:0000077!7.38e-12!130;UBERON:0004921!1.57e-11!129;UBERON:0004185!1.57e-11!129;UBERON:0000464!3.90e-11!104;UBERON:0001041!1.57e-10!98;UBERON:0000063!1.59e-10!97;UBERON:0000466!1.31e-07!126;UBERON:0006554!1.52e-07!44;UBERON:0005178!1.71e-07!34;UBERON:0002224!1.71e-07!34;UBERON:0005177!2.91e-07!107;UBERON:0001008!3.05e-07!45;UBERON:0000064!3.51e-07!219;UBERON:0005181!3.93e-07!35;UBERON:0009773!8.09e-07!12;UBERON:0001231!8.09e-07!12;UBERON:0004810!8.09e-07!12|ontology_enrichment_uberon_v019=UBERON:0001737;3.42e-19;9!UBERON:0001557;3.42e-19;9!UBERON:0000072;1.75e-14;37!UBERON:0000065;3.36e-14;44!UBERON:0001004;6.14e-10;65!UBERON:0007196;1.43e-07;15!UBERON:0001558;1.43e-07;15!UBERON:0004815;3.75e-07;3!UBERON:0002031;3.75e-07;3!UBERON:0003126;4.68e-07;7!UBERON:0001005;4.68e-07;7!UBERON:0004211;6.53e-07;10!UBERON:0009773;6.53e-07;10!UBERON:0001231;6.53e-07;10!UBERON:0004810;6.53e-07;10|ontology_enrichment_uberon_v019_2=UBERON:0001004,1.33e-23,74;UBERON:0000065,1.29e-21,54;UBERON:0000072,3.07e-20,47;UBERON:0001557,4.05e-20,19;UBERON:0001737,3.41e-19,9;UBERON:0004119,7.51e-16,160;UBERON:0000925,7.51e-16,160;UBERON:0006595,7.51e-16,160;UBERON:0008947,1.07e-15,38;UBERON:0003258,1.07e-15,38;UBERON:0001041,3.84e-15,87;UBERON:0001007,2.42e-11,145;UBERON:0001555,2.42e-11,145;UBERON:0007026,2.42e-11,145;UBERON:0004921,2.53e-11,118;UBERON:0000166,1.05e-07,22;UBERON:0007196,1.36e-07,15;UBERON:0001558,1.36e-07,15;UBERON:0004815,3.88e-07,3;UBERON:0002031,3.88e-07,3;UBERON:0003126,4.26e-07,7;UBERON:0001005,4.26e-07,7;UBERON:0004810,6.36e-07,10|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,1.39560233594486,0,0,0.247532705920093,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.35536979583142,5.12050061923025,2.58827807116751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0.327447688744282,10.2002680721912,6.3033355273353,0.97364218096405,0.348259474598534,0.398873881556595,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.23312862571041,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.505008341862199,0,0,0,0,0.150238058906597,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0,0,0,0.10075209822764,0,3.67195621010264,4.90943017063502,0.286804595389004,3.65921118388786,3.84336328132307,3.60201222895507,2.798848485415,4.28945446488568,2.55484151353081,0,0,0,0,0,7.21671480243048,5.56329477257736,5.06123162755312,7.72057809126758,7.84365998732662,7.82993043066619,9.57302287937167,9.02618739576592,6.54070166808864,0,0,0,0,0,0,0,0,0,0,2.63400684980701,2.24803506515239,0.201057944823262,0.0925884451585296,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=342897 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=33739 | |||
|TSSclassifier=S | |||
|UniProt=Q6ZVX7 | |||
|association_with_transcript=-16bp_to_ENST00000339852,NM_001001414,uc002okq.1_5end | |||
|coexpression_cluster_id=C61 | |||
|description=CAGE_peak_2_at_NCCRP1_5end | |||
|id=chr19:39687556..39687587,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.94e-17!254;CL:0002076!7.64e-14!43;CL:0000147!6.64e-11!14;CL:0002368!1.45e-09!13;CL:0000148!2.74e-09!10;CL:0000541!2.74e-09!10;CL:0000223!1.60e-08!59;CL:0000150!2.16e-08!9;CL:0000990!5.93e-08!8;CL:0002077!6.10e-08!33;CL:0000453!2.93e-07!5;CL:0000622!4.71e-07!5;CL:0002322!7.52e-07!5;CL:1000507!8.09e-07!12;CL:1000494!8.09e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000148;2.57e-12;10!CL:0000453;3.68e-11;5!CL:0002368;5.03e-11;13!CL:0000150;5.82e-11;9!CL:0000147;9.33e-11;14!CL:0000622;1.08e-10;5!CL:0002322;1.89e-10;5!CL:0002077;1.34e-09;34!CL:0000154;7.84e-09;6!CL:0002076;9.22e-09;42!CL:0000075;2.02e-08;27!CL:0000244;3.55e-08;4!CL:0000731;3.55e-08;4!CL:0002202;7.81e-08;9!CL:0002632;7.81e-08;9!CL:0002328;3.75e-07;3!CL:0000710;6.34e-07;20!CL:1000507;6.53e-07;10!CL:1000494;6.53e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,4.81e-18,253;CL:0000148,2.43e-12,10;CL:0000541,2.43e-12,10;CL:0002076,2.49e-11,42;CL:0000453,3.32e-11,5;CL:0002368,4.43e-11,13;CL:0000150,4.80e-11,9;CL:0000622,7.39e-11,5;CL:0000147,9.02e-11,14;CL:0002322,1.62e-10,5;CL:0002077,1.72e-10,34;CL:0000154,5.74e-09,6;CL:0000075,1.94e-08,27;CL:0000244,3.85e-08,4;CL:0000731,3.85e-08,4;CL:0002202,8.09e-08,9;CL:0002632,8.09e-08,9;CL:0002328,3.88e-07,3;CL:0000223,5.46e-07,58;CL:0000710,6.28e-07,20;CL:1000507,6.36e-07,10;CL:1000494,6.36e-07,10;CL:0002623,6.67e-07,3 | |||
|ontology_enrichment_development_v019=UBERON:0008947;6.20e-10;29 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001004!1.60e-20!72;UBERON:0000065!3.50e-20!53;UBERON:0004119!1.40e-16!169;UBERON:0000925!1.40e-16!169;UBERON:0006595!1.40e-16!169;UBERON:0000072!2.37e-15!46;UBERON:0008947!7.40e-15!38;UBERON:0003258!7.40e-15!38;UBERON:0001557!3.60e-13!19;UBERON:0001007!7.36e-13!155;UBERON:0001555!7.36e-13!155;UBERON:0007026!7.36e-13!155;UBERON:0001737!5.47e-12!9;UBERON:0000077!7.38e-12!130;UBERON:0004921!1.57e-11!129;UBERON:0004185!1.57e-11!129;UBERON:0000464!3.90e-11!104;UBERON:0001041!1.57e-10!98;UBERON:0000063!1.59e-10!97;UBERON:0000466!1.31e-07!126;UBERON:0006554!1.52e-07!44;UBERON:0005178!1.71e-07!34;UBERON:0002224!1.71e-07!34;UBERON:0005177!2.91e-07!107;UBERON:0001008!3.05e-07!45;UBERON:0000064!3.51e-07!219;UBERON:0005181!3.93e-07!35;UBERON:0009773!8.09e-07!12;UBERON:0001231!8.09e-07!12;UBERON:0004810!8.09e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;3.42e-19;9!UBERON:0001557;3.42e-19;9!UBERON:0000072;1.75e-14;37!UBERON:0000065;3.36e-14;44!UBERON:0001004;6.14e-10;65!UBERON:0007196;1.43e-07;15!UBERON:0001558;1.43e-07;15!UBERON:0004815;3.75e-07;3!UBERON:0002031;3.75e-07;3!UBERON:0003126;4.68e-07;7!UBERON:0001005;4.68e-07;7!UBERON:0004211;6.53e-07;10!UBERON:0009773;6.53e-07;10!UBERON:0001231;6.53e-07;10!UBERON:0004810;6.53e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001004,1.33e-23,74;UBERON:0000065,1.29e-21,54;UBERON:0000072,3.07e-20,47;UBERON:0001557,4.05e-20,19;UBERON:0001737,3.41e-19,9;UBERON:0004119,7.51e-16,160;UBERON:0000925,7.51e-16,160;UBERON:0006595,7.51e-16,160;UBERON:0008947,1.07e-15,38;UBERON:0003258,1.07e-15,38;UBERON:0001041,3.84e-15,87;UBERON:0001007,2.42e-11,145;UBERON:0001555,2.42e-11,145;UBERON:0007026,2.42e-11,145;UBERON:0004921,2.53e-11,118;UBERON:0000166,1.05e-07,22;UBERON:0007196,1.36e-07,15;UBERON:0001558,1.36e-07,15;UBERON:0004815,3.88e-07,3;UBERON:0002031,3.88e-07,3;UBERON:0003126,4.26e-07,7;UBERON:0001005,4.26e-07,7;UBERON:0004810,6.36e-07,10 | |||
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|short_description=p2@NCCRP1 | |||
}} |
Revision as of 20:31, 11 September 2013
Short description: | p2@NCCRP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_NCCRP1_5end |
Coexpression cluster: | C61_migratory_Dendritic_immature_Macrophage_xeroderma_cord_b |
Association with transcript: | -16bp_to_ENST00000339852, NM_001001414, uc002okq.1_5end |
EntrezGene: | NCCRP1 |
HGNC: | 33739 |
UniProt: | Q6ZVX7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 4.81e-18 | 253 |
melanocyte | 2.43e-12 | 10 |
melanoblast | 2.43e-12 | 10 |
endo-epithelial cell | 2.49e-11 | 42 |
Langerhans cell | 3.32e-11 | 5 |
respiratory epithelial cell | 4.43e-11 | 13 |
glandular epithelial cell | 4.80e-11 | 9 |
acinar cell | 7.39e-11 | 5 |
pigment cell | 9.02e-11 | 14 |
embryonic stem cell | 1.62e-10 | 5 |
ecto-epithelial cell | 1.72e-10 | 34 |
protein secreting cell | 5.74e-09 | 6 |
columnar/cuboidal epithelial cell | 1.94e-08 | 27 |
transitional epithelial cell | 3.85e-08 | 4 |
urothelial cell | 3.85e-08 | 4 |
epithelial cell of tracheobronchial tree | 8.09e-08 | 9 |
epithelial cell of lower respiratory tract | 8.09e-08 | 9 |
bronchial epithelial cell | 3.88e-07 | 3 |
endodermal cell | 5.46e-07 | 58 |
neurecto-epithelial cell | 6.28e-07 | 20 |
kidney tubule cell | 6.36e-07 | 10 |
nephron tubule epithelial cell | 6.36e-07 | 10 |
acinar cell of salivary gland | 6.67e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
respiratory system | 1.33e-23 | 74 |
respiratory tract | 1.29e-21 | 54 |
segment of respiratory tract | 3.07e-20 | 47 |
upper respiratory tract | 4.05e-20 | 19 |
larynx | 3.41e-19 | 9 |
endoderm-derived structure | 7.51e-16 | 160 |
endoderm | 7.51e-16 | 160 |
presumptive endoderm | 7.51e-16 | 160 |
respiratory primordium | 1.07e-15 | 38 |
endoderm of foregut | 1.07e-15 | 38 |
foregut | 3.84e-15 | 87 |
digestive system | 2.42e-11 | 145 |
digestive tract | 2.42e-11 | 145 |
primitive gut | 2.42e-11 | 145 |
subdivision of digestive tract | 2.53e-11 | 118 |
oral opening | 1.05e-07 | 22 |
tracheobronchial tree | 1.36e-07 | 15 |
lower respiratory tract | 1.36e-07 | 15 |
lower respiratory tract epithelium | 3.88e-07 | 3 |
epithelium of bronchus | 3.88e-07 | 3 |
trachea | 4.26e-07 | 7 |
respiratory airway | 4.26e-07 | 7 |
nephron tubule epithelium | 6.36e-07 | 10 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.