FFCP PHASE1:Hg19::chr18:61442603..61442619,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8710|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=13902|TSSclassifier=S|UniProt=O75635|association_with_transcript=0bp_to_NM_003784,uc002ljm.2,uc010xet.1_5end|description=CAGE_peak_3_at_SERPINB7_5end|id=chr18:61442603..61442619,+|ontology_enrichment_celltype=CL:0002620!2.28e-11!23;CL:0002159!1.29e-10!13;CL:0000066!4.05e-08!254;CL:0002077!7.12e-08!33;CL:0000057!1.41e-07!75|ontology_enrichment_celltype_v019=CL:0002159;3.06e-12;14!CL:0000244;8.94e-12;4!CL:0000731;8.94e-12;4!CL:0002620;1.59e-10;23!CL:0002077;6.03e-09;34!CL:0000240;2.86e-08;6!CL:0000311;2.86e-08;6!CL:0000079;2.86e-08;6!CL:0000237;2.86e-08;6!CL:0000197;4.55e-08;6!CL:0000098;4.55e-08;6!CL:0002167;4.55e-08;6!CL:0000362;5.15e-08;9!CL:0000575;9.69e-07;2|ontology_enrichment_celltype_v019_2=CL:0002159,3.05e-12,14;CL:0000244,3.63e-12,4;CL:0000731,3.63e-12,4;CL:0002620,2.80e-10,23;CL:0002077,8.62e-10,34;CL:0000240,3.19e-08,6;CL:0000311,3.19e-08,6;CL:0000079,3.19e-08,6;CL:0000237,3.19e-08,6;CL:0000036,3.19e-08,6;CL:0000357,3.19e-08,6;CL:0000114,3.19e-08,6;CL:0000362,4.53e-08,9;CL:0000197,4.82e-08,6;CL:0000098,4.82e-08,6;CL:0002167,4.82e-08,6;CL:0002327,7.48e-07,4|ontology_enrichment_development_v019=CL:0000357;2.86e-08;6!CL:0000114;2.86e-08;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003102!5.31e-19!95;UBERON:0002097!2.38e-17!40;UBERON:0002199!1.26e-15!45;UBERON:0002416!1.26e-15!45;UBERON:0000475!4.80e-08!365;UBERON:0005910!1.18e-07!6;UBERON:0004871!3.72e-07!8;UBERON:0000486!8.28e-07!82|ontology_enrichment_uberon_v019=UBERON:0002097;4.40e-16;41!UBERON:0003102;1.91e-13;50!UBERON:0002199;3.54e-12;46!UBERON:0002416;3.54e-12;46!UBERON:0005910;6.31e-12;6!UBERON:0001003;2.93e-11;15!UBERON:0007376;2.93e-11;15!UBERON:0000486;1.17e-10;12!UBERON:0000365;2.00e-09;5!UBERON:0010371;4.93e-07;31|ontology_enrichment_uberon_v019_2=UBERON:0002097,2.08e-20,41;UBERON:0002199,1.19e-17,46;UBERON:0002416,1.19e-17,46;UBERON:0003102,6.14e-14,99;UBERON:0005910,3.31e-12,6;UBERON:0001003,2.53e-11,15;UBERON:0007376,2.53e-11,15;UBERON:0007383,2.53e-11,15;UBERON:0000365,9.83e-10,5;UBERON:0001911,7.48e-07,4;UBERON:0005333,7.48e-07,4;UBERON:0008425,7.48e-07,4;UBERON:0005311,7.48e-07,4|phase1_expression=2.18014055124668,0.642301571672949,0.704772020479856,0,0.446961094427288,0,0,0,0,0,0,0.218441372130172,0.527533956456907,0.247532705920093,0,0,0,0.730310090387373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,0.369754010166788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.087834785693126,0,1.09288586487763,3.70784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0.529636723252875,0,0,0,0,0,0,0,0,0,0,0,0.312160076830321,0,0.149448680551801,1.05691048779388,0.161872944368132,0.421352420106746,0,0.122834317311768,0,0,0,0,0,0,0.125118519871964,0.277064115484183,0.877955241761676,0,0,0,1.07633781413317,0,0.847727604638247,0.600182192168805,0,4.89517026086695,5.58350568994769,1.0126579934476,1.26668106709558,0,0.920498986422993,0,1.06502877754984,1.20902517873168,4.0694542154517,1.54608682530637,1.63647672354501,0.573609190778008,0,0,0,0,0,0,3.12899064659632,0,1.38134921352481,1.39310378409594,0,0.118306800039844,0,0,0.220587945464788,0,0.474541238222193,0.134831308160164,0,0,0,0,0,0,0,0,0,0,0,0,2.96325770603289,8.99214026060957,6.53438320675601,1.01847289674383,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,3.74935335947108,0.503946384596579,0.850650583454319,1.61205340865127,1.74380363108377,1.53353071666084,0,0,0,0,0,0.380987365753014,0,0,0,0.205654985406647,0,0,0,0,0.07333828582095,0,0,0,0.26593811658487,0,0,1.41849132023278,0,0,0,0,0.65147236858747,0,0,0.301439377059586,0,0.499864955910285,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0.500170521059677,0,0,0,2.99634588564476,2.10854546986884,0,0,0,0,0.184369168541703,0.347534457872331,0,0,0,0,0,0,0,0,3.72161711728165,0.153461973288062,0.280660094433074,0.896974044789907,0,0.482561763430822,0,0.616838775210622,0,0.164254312027618,0,0,0,0.802025881213139,1.56537681191024,0,0,0.131124414959424,0,0.385076685522074,0,0,0,0,0,0,0,0,0,9.17554582962138,0,0,0,0,0.512900250232778,0,0,0,0,0,0.574265537996172,1.30012049207304,3.21367859688319,0.096670718292122,0.154048617114644,0.15350367472613,0.964856007391714,0.537101224341368,1.16013355131383,0.340906509664404,0.178064071293475,0.661139661443912,0,0.510450849978337,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0.511795582622668,0,0,0,0.719489830333259,0.274537029736055,0.471249609382746,0,0,0,0,0,0,0.136499911407986,0.141405431953713,0,0,0,0,0,0,0,0,0,0.430234056612155,0.294747123039363,0,2.48332744849418,0,0,0,0,0.577332676353072,0.670302275535787,0,0,1.72202149068492,5.05414427002877,1.7737206141467,2.98640420269047,0,0,0,0,0,0,0,0,0,1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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=8710 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13902 | |||
|TSSclassifier=S | |||
|UniProt=O75635 | |||
|association_with_transcript=0bp_to_NM_003784,uc002ljm.2,uc010xet.1_5end | |||
|description=CAGE_peak_3_at_SERPINB7_5end | |||
|id=chr18:61442603..61442619,+ | |||
|ontology_enrichment_celltype=CL:0002620!2.28e-11!23;CL:0002159!1.29e-10!13;CL:0000066!4.05e-08!254;CL:0002077!7.12e-08!33;CL:0000057!1.41e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0002159;3.06e-12;14!CL:0000244;8.94e-12;4!CL:0000731;8.94e-12;4!CL:0002620;1.59e-10;23!CL:0002077;6.03e-09;34!CL:0000240;2.86e-08;6!CL:0000311;2.86e-08;6!CL:0000079;2.86e-08;6!CL:0000237;2.86e-08;6!CL:0000197;4.55e-08;6!CL:0000098;4.55e-08;6!CL:0002167;4.55e-08;6!CL:0000362;5.15e-08;9!CL:0000575;9.69e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,3.05e-12,14;CL:0000244,3.63e-12,4;CL:0000731,3.63e-12,4;CL:0002620,2.80e-10,23;CL:0002077,8.62e-10,34;CL:0000240,3.19e-08,6;CL:0000311,3.19e-08,6;CL:0000079,3.19e-08,6;CL:0000237,3.19e-08,6;CL:0000036,3.19e-08,6;CL:0000357,3.19e-08,6;CL:0000114,3.19e-08,6;CL:0000362,4.53e-08,9;CL:0000197,4.82e-08,6;CL:0000098,4.82e-08,6;CL:0002167,4.82e-08,6;CL:0002327,7.48e-07,4 | |||
|ontology_enrichment_development_v019=CL:0000357;2.86e-08;6!CL:0000114;2.86e-08;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!5.31e-19!95;UBERON:0002097!2.38e-17!40;UBERON:0002199!1.26e-15!45;UBERON:0002416!1.26e-15!45;UBERON:0000475!4.80e-08!365;UBERON:0005910!1.18e-07!6;UBERON:0004871!3.72e-07!8;UBERON:0000486!8.28e-07!82 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;4.40e-16;41!UBERON:0003102;1.91e-13;50!UBERON:0002199;3.54e-12;46!UBERON:0002416;3.54e-12;46!UBERON:0005910;6.31e-12;6!UBERON:0001003;2.93e-11;15!UBERON:0007376;2.93e-11;15!UBERON:0000486;1.17e-10;12!UBERON:0000365;2.00e-09;5!UBERON:0010371;4.93e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,2.08e-20,41;UBERON:0002199,1.19e-17,46;UBERON:0002416,1.19e-17,46;UBERON:0003102,6.14e-14,99;UBERON:0005910,3.31e-12,6;UBERON:0001003,2.53e-11,15;UBERON:0007376,2.53e-11,15;UBERON:0007383,2.53e-11,15;UBERON:0000365,9.83e-10,5;UBERON:0001911,7.48e-07,4;UBERON:0005333,7.48e-07,4;UBERON:0008425,7.48e-07,4;UBERON:0005311,7.48e-07,4 | |||
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|short_description=p3@SERPINB7 | |||
}} |
Revision as of 18:01, 11 September 2013
Short description: | p3@SERPINB7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_SERPINB7_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_003784, uc002ljm.2, uc010xet.1_5end |
EntrezGene: | SERPINB7 |
HGNC: | 13902 |
UniProt: | O75635 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 3.05e-12 | 14 |
transitional epithelial cell | 3.63e-12 | 4 |
urothelial cell | 3.63e-12 | 4 |
skin fibroblast | 2.80e-10 | 23 |
ecto-epithelial cell | 8.62e-10 | 34 |
stratified squamous epithelial cell | 3.19e-08 | 6 |
keratin accumulating cell | 3.19e-08 | 6 |
stratified epithelial cell | 3.19e-08 | 6 |
keratinizing barrier epithelial cell | 3.19e-08 | 6 |
epithelial fate stem cell | 3.19e-08 | 6 |
stratified epithelial stem cell | 3.19e-08 | 6 |
surface ectodermal cell | 3.19e-08 | 6 |
epidermal cell | 4.53e-08 | 9 |
receptor cell | 4.82e-08 | 6 |
sensory epithelial cell | 4.82e-08 | 6 |
olfactory epithelial cell | 4.82e-08 | 6 |
mammary gland epithelial cell | 7.48e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
skin of body | 2.08e-20 | 41 |
integument | 1.19e-17 | 46 |
integumental system | 1.19e-17 | 46 |
surface structure | 6.14e-14 | 99 |
transitional epithelium | 3.31e-12 | 6 |
skin epidermis | 2.53e-11 | 15 |
outer epithelium | 2.53e-11 | 15 |
enveloping layer of ectoderm | 2.53e-11 | 15 |
urothelium | 9.83e-10 | 5 |
mammary gland | 7.48e-07 | 4 |
mammary bud | 7.48e-07 | 4 |
mammary ridge | 7.48e-07 | 4 |
mammary placode | 7.48e-07 | 4 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.