FFCP PHASE1:Hg19::chr18:46607960..46607989,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=W|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr18:46607960..46607989,-|id=chr18:46607960..46607989,-|ontology_enrichment_celltype=CL:0002379!5.05e-08!1|ontology_enrichment_celltype_v019=CL:0002552;1.33e-32;5!CL:0000135;1.71e-14;3!CL:0000214;1.71e-14;3!CL:0000388;1.71e-14;3|ontology_enrichment_celltype_v019_2=CL:0002552,1.23e-32,5;CL:0000214,1.40e-14,3;CL:0000135,2.09e-14,3;CL:0000388,2.09e-14,3|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:3620!5.05e-08!1;DOID:3565!5.05e-08!1;DOID:6193!6.19e-08!1|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000989!2.90e-08!1;UBERON:0008811!2.90e-08!1;UBERON:0006258!2.90e-08!1;UBERON:0005876!2.90e-08!1;UBERON:0004874!2.90e-08!1;UBERON:0002370!6.21e-08!4;UBERON:0005058!6.21e-08!4;UBERON:0009113!6.21e-08!4;UBERON:0003295!6.21e-08!4;UBERON:0005562!6.21e-08!4;UBERON:0002363!8.69e-08!1;UBERON:0007647!8.69e-08!1;UBERON:0010115!8.69e-08!1|ontology_enrichment_uberon_v019=UBERON:0002370;5.15e-21;2!UBERON:0005058;5.15e-21;2!UBERON:0009113;5.15e-21;2!UBERON:0001828;7.72e-21;8!UBERON:0007846;1.71e-14;3!UBERON:0006915;1.71e-14;3!UBERON:0007616;1.71e-14;3!UBERON:0000043;1.71e-14;3!UBERON:0007845;1.71e-14;3!UBERON:0002217;1.71e-14;3!UBERON:0002018;1.71e-14;3!UBERON:0003729;2.94e-13;13!UBERON:0000161;2.12e-09;19!UBERON:0000166;2.12e-09;19!UBERON:0004177;3.10e-09;5!UBERON:0005057;3.10e-09;5!UBERON:0000344;5.59e-09;20|ontology_enrichment_uberon_v019_2=UBERON:0001828,7.35e-21,8;UBERON:0006915,1.40e-14,3;UBERON:0007616,1.40e-14,3;UBERON:0002217,1.40e-14,3;UBERON:0002018,1.40e-14,3;UBERON:0007846,2.09e-14,3;UBERON:0000043,2.09e-14,3;UBERON:0007845,2.09e-14,3;UBERON:0003729,2.85e-13,13;UBERON:0002370,3.42e-11,4;UBERON:0005058,3.42e-11,4;UBERON:0009113,3.42e-11,4;UBERON:0003295,3.42e-11,4;UBERON:0005562,3.42e-11,4;UBERON:0000344,5.48e-09,20;UBERON:0000166,2.93e-08,22;UBERON:0003351,6.78e-08,6;UBERON:0004177,6.04e-07,7;UBERON:0005057,6.04e-07,7|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.37600571456411,1.7308685049499,0,0,0,0,0,0,0,0.600952235626387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193341436584244,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0.487426979262569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97576935775941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0.13480708770837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0.889811221596536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29787968637137,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48554492622814,0.558672428662721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402547587182052,0|short_description=p@chr18:46607960..46607989,-}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=W | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr18:46607960..46607989,- | |||
|id=chr18:46607960..46607989,- | |||
|ontology_enrichment_celltype=CL:0002379!5.05e-08!1 | |||
|ontology_enrichment_celltype_v019=CL:0002552;1.33e-32;5!CL:0000135;1.71e-14;3!CL:0000214;1.71e-14;3!CL:0000388;1.71e-14;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002552,1.23e-32,5;CL:0000214,1.40e-14,3;CL:0000135,2.09e-14,3;CL:0000388,2.09e-14,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3620!5.05e-08!1;DOID:3565!5.05e-08!1;DOID:6193!6.19e-08!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000989!2.90e-08!1;UBERON:0008811!2.90e-08!1;UBERON:0006258!2.90e-08!1;UBERON:0005876!2.90e-08!1;UBERON:0004874!2.90e-08!1;UBERON:0002370!6.21e-08!4;UBERON:0005058!6.21e-08!4;UBERON:0009113!6.21e-08!4;UBERON:0003295!6.21e-08!4;UBERON:0005562!6.21e-08!4;UBERON:0002363!8.69e-08!1;UBERON:0007647!8.69e-08!1;UBERON:0010115!8.69e-08!1 | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;5.15e-21;2!UBERON:0005058;5.15e-21;2!UBERON:0009113;5.15e-21;2!UBERON:0001828;7.72e-21;8!UBERON:0007846;1.71e-14;3!UBERON:0006915;1.71e-14;3!UBERON:0007616;1.71e-14;3!UBERON:0000043;1.71e-14;3!UBERON:0007845;1.71e-14;3!UBERON:0002217;1.71e-14;3!UBERON:0002018;1.71e-14;3!UBERON:0003729;2.94e-13;13!UBERON:0000161;2.12e-09;19!UBERON:0000166;2.12e-09;19!UBERON:0004177;3.10e-09;5!UBERON:0005057;3.10e-09;5!UBERON:0000344;5.59e-09;20 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001828,7.35e-21,8;UBERON:0006915,1.40e-14,3;UBERON:0007616,1.40e-14,3;UBERON:0002217,1.40e-14,3;UBERON:0002018,1.40e-14,3;UBERON:0007846,2.09e-14,3;UBERON:0000043,2.09e-14,3;UBERON:0007845,2.09e-14,3;UBERON:0003729,2.85e-13,13;UBERON:0002370,3.42e-11,4;UBERON:0005058,3.42e-11,4;UBERON:0009113,3.42e-11,4;UBERON:0003295,3.42e-11,4;UBERON:0005562,3.42e-11,4;UBERON:0000344,5.48e-09,20;UBERON:0000166,2.93e-08,22;UBERON:0003351,6.78e-08,6;UBERON:0004177,6.04e-07,7;UBERON:0005057,6.04e-07,7 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.37600571456411,1.7308685049499,0,0,0,0,0,0,0,0.600952235626387,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300946099727719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193341436584244,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318203247925937,0,0,0,0,0,0,0,0,0.487426979262569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.97576935775941,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144269212976445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.126373159256976,0.150323419414493,0,0,0,0,0,0,0,0,0,0,0,0.171986032471617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0.13480708770837,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0.889811221596536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.29787968637137,0,0,0,0,0,0,0,0,0,0,0,0,0,1.48554492622814,0.558672428662721,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.402547587182052,0 | |||
|short_description=p@chr18:46607960..46607989,- | |||
}} |
Revision as of 17:38, 11 September 2013
Short description: | p@chr18:46607960..46607989, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr18:46607960..46607989, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast of gingiva | 1.23e-32 | 5 |
synovial cell | 1.40e-14 | 3 |
fibrocyte | 2.09e-14 | 3 |
tendon cell | 2.09e-14 | 3 |
Ontology term | p-value | n |
---|---|---|
gingiva | 7.35e-21 | 8 |
stratified squamous epithelium | 1.40e-14 | 3 |
layer of synovial tissue | 1.40e-14 | 3 |
synovial joint | 1.40e-14 | 3 |
synovial membrane of synovial joint | 1.40e-14 | 3 |
dense regular connective tissue | 2.09e-14 | 3 |
tendon | 2.09e-14 | 3 |
regular connective tissue | 2.09e-14 | 3 |
mouth mucosa | 2.85e-13 | 13 |
thymus | 3.42e-11 | 4 |
hemolymphoid system gland | 3.42e-11 | 4 |
thymic region | 3.42e-11 | 4 |
pharyngeal gland | 3.42e-11 | 4 |
thymus primordium | 3.42e-11 | 4 |
mucosa | 5.48e-09 | 20 |
oral opening | 2.93e-08 | 22 |
pharyngeal epithelium | 6.78e-08 | 6 |
hemopoietic organ | 6.04e-07 | 7 |
immune organ | 6.04e-07 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.