FFCP PHASE1:Hg19::chr18:34409116..34409128,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=25941|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24561|TSSclassifier=S|UniProt=Q68CL5|association_with_transcript=29bp_to_ENST00000334295,NM_015476,uc002kzv.1,uc002kzw.1,uc002kzx.1,uc002kzy.3,uc010xci.1_5end|coexpression_cluster_id=C1|description=CAGE_peak_10_at_TPGS2_5end|id=chr18:34409116..34409128,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=CL:1000746;2.46e-10;7!CL:1000612;2.46e-10;7!CL:0000650;1.57e-09;2!CL:1000500;1.57e-09;2!CL:1000618;1.57e-09;2!CL:1001318;1.57e-09;2!CL:0002173;1.57e-09;2|ontology_enrichment_celltype_v019_2=CL:1000746,3.11e-10,7;CL:1000612,3.11e-10,7;CL:0000650,2.02e-09,2;CL:1000500,2.02e-09,2;CL:1000618,2.02e-09,2;CL:1001318,2.02e-09,2;CL:0002173,2.02e-09,2|ontology_enrichment_development_v019=UBERON:0006222;1.03e-17;1!UBERON:0009117;1.02e-07;10!UBERON:0005564;1.02e-07;10|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000475!9.07e-07!365|ontology_enrichment_uberon_v019=UBERON:0000074;2.46e-10;7!UBERON:0001229;2.46e-10;7!UBERON:0003567;1.57e-09;2!UBERON:0003838;1.57e-09;2!UBERON:0003586;1.57e-09;2!UBERON:0005169;1.57e-09;2!UBERON:0002321;1.57e-09;2!UBERON:0005215;1.57e-09;2!UBERON:0002303;1.57e-09;2!UBERON:0002319;1.57e-09;2!UBERON:0000473;1.99e-09;8!UBERON:0003135;4.30e-07;11|ontology_enrichment_uberon_v019_2=UBERON:0010532,3.11e-10,7;UBERON:0000074,3.11e-10,7;UBERON:0001229,3.11e-10,7;UBERON:0001230,3.11e-10,7;UBERON:0003220,3.11e-10,7;UBERON:0005749,3.11e-10,7;UBERON:0004199,3.11e-10,7;UBERON:0004209,3.11e-10,7;UBERON:0004198,3.11e-10,7;UBERON:0000473,1.99e-09,8;UBERON:0003567,2.02e-09,2;UBERON:0003838,2.02e-09,2;UBERON:0003586,2.02e-09,2;UBERON:0005169,2.02e-09,2;UBERON:0002321,2.02e-09,2;UBERON:0005215,2.02e-09,2;UBERON:0002303,2.02e-09,2;UBERON:0002319,2.02e-09,2;UBERON:0005103,4.54e-09,8;UBERON:0000083,4.54e-09,8;UBERON:0009201,4.54e-09,8;UBERON:0006553,4.54e-09,8;UBERON:0003074,4.54e-09,8;UBERON:0003060,4.54e-09,8;UBERON:0000080,3.68e-08,9;UBERON:0002120,3.68e-08,9;UBERON:0004875,3.68e-08,9;UBERON:0005721,3.68e-08,9;UBERON:0005754,3.68e-08,9;UBERON:0007297,3.68e-08,9;UBERON:0003135,4.30e-07,11;UBERON:0004876,7.82e-07,11|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0.218441372130172,0.263766978228454,0.123766352960047,0.331397375727916,0,0,1.46062018077475,0.487932798790507,0.246242116153576,0.204000691244253,0.313454721478088,0.572471974262113,0.273748850145768,0,0.0764134057479513,0.0821005894499457,0.0787107813136792,0,0,0,0,0,0,0,0.284338464974843,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0.0945348171640679,0.221729397462564,0,2.94702919869853,0,0,0,0,0,0,0,0,0,0,0,0,0,0.275118041940067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183201743930407,0,0,0,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0.302714855289863,0,0,0,0,0.149448680551801,0.469737994575059,0.161872944368132,0.140450806702248,0,0.245668634623536,0,0,0,0,0,0,0.250237039743928,0.277064115484183,0.438977620880838,0,0.150238058906597,0.113432183160021,0.179389635688862,0,0,0,0,0,0,0.168776332241266,0.0974370051611986,0,0.0920498986422993,0.161646056818812,0,0.201504196455281,0.169560592310488,0.193260853163297,0,0,0,0.132529768321485,0.116193942869518,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0.217879444092406,0,0.134831308160164,0.196221465125346,0.38474715694639,0.738155454624648,0,0,0,0,0,0,0.441463099414651,0,0.514703430895577,0.109750285408626,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.141775097242386,0,0,0.383382679165211,0,0,0,0,0,0.190493682876507,0,0,0,0,0,0,0.224262168690721,0.43596006883328,0.4400297149257,0.129271715757778,0,0,0,0,0.257207374262142,0,0.266422179016099,0,0,0.823240336780769,0.325736184293735,0.355391948742546,0,0,0,0,0,0,0,0.239624855491583,0,0,0.144781306667579,0,0.179060963239896,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.12269149171914,0,0,0.207970861530807,0.356857977594324,0,0,0.601892199455438,2.27407504055985,0,0,0.184369168541703,0.0868836144680828,0,0.343143423810856,0,0,0,0.303127571446259,0,0.604780586659361,0,0,0,0.128139149255701,0,0.160853921143607,0,0,0,0,0,0.116210378459959,0.120859449591622,0.200506470303285,0,0.229628896329213,0.182091168006717,0,0.902399225814824,0,0,0,0.316654886678627,1.13733384070897,0,0,0,0,1.00337954770971,0.509752546090077,0,0.671624264166535,0,0,0.256450125116389,0,0.325378394664303,0.206082023295445,0.0915694648183434,0,0.574265537996172,0,0,0.193341436584244,0,0.307007349452259,0.137836572484531,0,0.290033387828457,0.170453254832202,0.178064071293475,0.330569830721956,0.192190067365106,0,0.30347334256665,0,0,0,0.308033580176089,0.532306030317022,0,0.18532421910392,0,0.372158369359667,0.316379424718726,0,0,0,0,0,0.179872457583315,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=25941 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24561 | |||
|TSSclassifier=S | |||
|UniProt=Q68CL5 | |||
|association_with_transcript=29bp_to_ENST00000334295,NM_015476,uc002kzv.1,uc002kzw.1,uc002kzx.1,uc002kzy.3,uc010xci.1_5end | |||
|coexpression_cluster_id=C1 | |||
|description=CAGE_peak_10_at_TPGS2_5end | |||
|id=chr18:34409116..34409128,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:1000746;2.46e-10;7!CL:1000612;2.46e-10;7!CL:0000650;1.57e-09;2!CL:1000500;1.57e-09;2!CL:1000618;1.57e-09;2!CL:1001318;1.57e-09;2!CL:0002173;1.57e-09;2 | |||
|ontology_enrichment_celltype_v019_2=CL:1000746,3.11e-10,7;CL:1000612,3.11e-10,7;CL:0000650,2.02e-09,2;CL:1000500,2.02e-09,2;CL:1000618,2.02e-09,2;CL:1001318,2.02e-09,2;CL:0002173,2.02e-09,2 | |||
|ontology_enrichment_development_v019=UBERON:0006222;1.03e-17;1!UBERON:0009117;1.02e-07;10!UBERON:0005564;1.02e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000475!9.07e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0000074;2.46e-10;7!UBERON:0001229;2.46e-10;7!UBERON:0003567;1.57e-09;2!UBERON:0003838;1.57e-09;2!UBERON:0003586;1.57e-09;2!UBERON:0005169;1.57e-09;2!UBERON:0002321;1.57e-09;2!UBERON:0005215;1.57e-09;2!UBERON:0002303;1.57e-09;2!UBERON:0002319;1.57e-09;2!UBERON:0000473;1.99e-09;8!UBERON:0003135;4.30e-07;11 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010532,3.11e-10,7;UBERON:0000074,3.11e-10,7;UBERON:0001229,3.11e-10,7;UBERON:0001230,3.11e-10,7;UBERON:0003220,3.11e-10,7;UBERON:0005749,3.11e-10,7;UBERON:0004199,3.11e-10,7;UBERON:0004209,3.11e-10,7;UBERON:0004198,3.11e-10,7;UBERON:0000473,1.99e-09,8;UBERON:0003567,2.02e-09,2;UBERON:0003838,2.02e-09,2;UBERON:0003586,2.02e-09,2;UBERON:0005169,2.02e-09,2;UBERON:0002321,2.02e-09,2;UBERON:0005215,2.02e-09,2;UBERON:0002303,2.02e-09,2;UBERON:0002319,2.02e-09,2;UBERON:0005103,4.54e-09,8;UBERON:0000083,4.54e-09,8;UBERON:0009201,4.54e-09,8;UBERON:0006553,4.54e-09,8;UBERON:0003074,4.54e-09,8;UBERON:0003060,4.54e-09,8;UBERON:0000080,3.68e-08,9;UBERON:0002120,3.68e-08,9;UBERON:0004875,3.68e-08,9;UBERON:0005721,3.68e-08,9;UBERON:0005754,3.68e-08,9;UBERON:0007297,3.68e-08,9;UBERON:0003135,4.30e-07,11;UBERON:0004876,7.82e-07,11 | |||
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| |||
|short_description=p10@TPGS2 | |||
}} |
Revision as of 17:22, 11 September 2013
Short description: | p10@TPGS2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_10_at_TPGS2_5end |
Coexpression cluster: | C1_testis_epididymis_embryonic_medulla_pituitary_trachea_caudate |
Association with transcript: | 29bp_to_ENST00000334295, NM_015476, uc002kzv.1, uc002kzw.1, uc002kzx.1, uc002kzy.3, uc010xci.1_5end |
EntrezGene: | TPGS2 |
HGNC: | 24561 |
UniProt: | Q68CL5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
glomerular cell | 3.11e-10 | 7 |
kidney corpuscule cell | 3.11e-10 | 7 |
mesangial cell | 2.02e-09 | 2 |
kidney interstitial cell | 2.02e-09 | 2 |
juxtaglomerular complex cell | 2.02e-09 | 2 |
renal interstitial pericyte | 2.02e-09 | 2 |
extraglomerular mesangial cell | 2.02e-09 | 2 |
Ontology term | p-value | n |
---|---|---|
primitive nephron | 3.11e-10 | 7 |
renal glomerulus | 3.11e-10 | 7 |
renal corpuscle | 3.11e-10 | 7 |
glomerular capsule | 3.11e-10 | 7 |
metanephric mesenchyme | 3.11e-10 | 7 |
glomerular tuft | 3.11e-10 | 7 |
S-shaped body | 3.11e-10 | 7 |
renal vesicle | 3.11e-10 | 7 |
comma-shaped body | 3.11e-10 | 7 |
testis | 1.99e-09 | 8 |
abdomen connective tissue | 2.02e-09 | 2 |
abdominal segment connective tissue | 2.02e-09 | 2 |
trunk connective tissue | 2.02e-09 | 2 |
interstitial tissue | 2.02e-09 | 2 |
extraglomerular mesangium | 2.02e-09 | 2 |
kidney interstitium | 2.02e-09 | 2 |
juxtaglomerular apparatus | 2.02e-09 | 2 |
mesangium | 2.02e-09 | 2 |
mesonephric epithelium | 4.54e-09 | 8 |
mesonephric tubule | 4.54e-09 | 8 |
nephric duct | 4.54e-09 | 8 |
renal duct | 4.54e-09 | 8 |
mesonephric duct | 4.54e-09 | 8 |
pronephric duct | 4.54e-09 | 8 |
mesonephros | 3.68e-08 | 9 |
pronephros | 3.68e-08 | 9 |
nephrogenic cord | 3.68e-08 | 9 |
pronephric mesoderm | 3.68e-08 | 9 |
rostral part of nephrogenic cord | 3.68e-08 | 9 |
presumptive pronephric mesoderm | 3.68e-08 | 9 |
male reproductive organ | 4.30e-07 | 11 |
urogenital ridge | 7.82e-07 | 11 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.