FFCP PHASE1:Hg19::chr18:28622894..28622905,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1825|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=3037|TSSclassifier=S|UniProt=Q14574|association_with_transcript=-113bp_to_ENST00000360428,ENST00000434452,NM_001941,NM_024423,uc002kwi.3,uc002kwj.3_5end|coexpression_cluster_id=C68|description=CAGE_peak_7_at_DSC3_5end|id=chr18:28622894..28622905,-|ontology_enrichment_celltype=CL:0000066!6.90e-12!254;CL:0002076!3.55e-08!43;CL:0002594!3.92e-07!4;CL:0002251!4.32e-07!21;CL:0000223!7.12e-07!59;CL:0000349!8.49e-07!3;CL:0002577!8.49e-07!3|ontology_enrichment_celltype_v019=CL:0000349;8.11e-34;19!CL:0002577;2.46e-25;3!CL:0002536;3.51e-17;2!CL:0002588;9.66e-17;2!CL:0002537;1.03e-15;5|ontology_enrichment_celltype_v019_2=CL:0000349,6.73e-34,19;CL:0002577,2.37e-25,3;CL:0002536,2.44e-17,2;CL:0002588,7.02e-17,2;CL:0002537,1.03e-15,5|ontology_enrichment_development_v019=UBERON:0007123;3.13e-07;5|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3112;3.12e-09;1|ontology_enrichment_disease_v019_2=DOID:3112,1.69e-09,1|ontology_enrichment_uberon=UBERON:0005631!1.29e-14!14;UBERON:0000158!1.29e-14!14;UBERON:0004119!4.68e-10!169;UBERON:0000925!4.68e-10!169;UBERON:0006595!4.68e-10!169;UBERON:0000478!7.41e-10!24;UBERON:0003124!3.46e-09!7;UBERON:0000161!2.08e-08!35;UBERON:0001987!3.33e-08!4;UBERON:0004340!3.33e-08!4;UBERON:0001004!1.30e-07!72;UBERON:0006562!1.59e-07!11;UBERON:0008814!2.40e-07!15;UBERON:0001310!3.92e-07!4;UBERON:0000305!3.96e-07!7;UBERON:0000166!6.93e-07!21|ontology_enrichment_uberon_v019=UBERON:0000305;2.21e-29;7!UBERON:0005631;2.44e-29;10!UBERON:0000158;2.44e-29;10!UBERON:0000478;1.66e-26;24!UBERON:0001987;3.67e-19;4!UBERON:0010260;1.91e-08;9!UBERON:0002046;3.13e-07;5!UBERON:0002066;3.13e-07;5|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.90e-46,14;UBERON:0000158,1.90e-46,14;UBERON:0000305,1.71e-29,7;UBERON:0000478,1.44e-26,24;UBERON:0004871,8.41e-26,8;UBERON:0001987,3.57e-19,4;UBERON:0004340,3.57e-19,4;UBERON:0003124,3.64e-19,7;UBERON:0004923,8.41e-09,66;UBERON:0010260,1.79e-08,9;UBERON:0002046,2.14e-07,5;UBERON:0004117,2.14e-07,5;UBERON:0007689,2.14e-07,5;UBERON:0007123,2.14e-07,5;UBERON:0003091,2.14e-07,5;UBERON:0002066,2.76e-07,5|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,4.15038607047327,1.58260186937072,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.511450247374121,0,0,0,0,0,0,0,0.351339142772504,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0.24666754841716,0,0.134710672069688,0.326923806226917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453728732640084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.545492241181669,0.573609190778008,0.121973706129595,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,0,0.343135620597051,0.98775256867763,1.1240175325762,0.301586917234893,0.833296006426766,0,0,0,0,1.40890433082986,0,0,0,0,0,0,0,0,0,1.00789276919316,0.141775097242386,0.358234090811393,0.871901815541886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299918973546171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12189300012382,4.99306318531491,3.0239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0.184161977871793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.656029291399411,0.650756789328606,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0.192190067365106,0.255225424989168,0.910420027699949,0,0.31481234683064,0,0,0,0,0,0,0,0.949138274156178,0.38126038784765,0.255897791311334,0,0,0,0,0,0.235624804691373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.608731130888112,1.239293992399,0.281695602532241,1.14729081763241,1.96498082026242,0.35667105148125,0,0,0,0,0,0.192444225451024,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.4733694469006,4.45447021248958,23.6513740616409,0,0,0.667852230137435,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,2.17499872630438,0.341380344856499,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.153900517007594,0,0,0.0897576444097721,0,6.38002319463839,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247127877893006,0,0,0,0,0,0,0,0,0,0,0.189559738885464,0.300646838828985,0.207376382794494,0,0,0,0,0,0,0,0.0979923974143777,0.34823682632161,0,0,0,0,0,0.290967049465258,0,0,0,0,0,0,0,0,0.19980960958213,0,0.687219576995494,1.54435498075768,0,0,0.471388069233591,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0.0674035438541849,0.196854963029498,0,0,0,0,0,0,0,0,0,0,0,0,0.739202355635845,0,1.34340638123612,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0.342173675768659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1825 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3037 | |||
|TSSclassifier=S | |||
|UniProt=Q14574 | |||
|association_with_transcript=-113bp_to_ENST00000360428,ENST00000434452,NM_001941,NM_024423,uc002kwi.3,uc002kwj.3_5end | |||
|coexpression_cluster_id=C68 | |||
|description=CAGE_peak_7_at_DSC3_5end | |||
|id=chr18:28622894..28622905,- | |||
|ontology_enrichment_celltype=CL:0000066!6.90e-12!254;CL:0002076!3.55e-08!43;CL:0002594!3.92e-07!4;CL:0002251!4.32e-07!21;CL:0000223!7.12e-07!59;CL:0000349!8.49e-07!3;CL:0002577!8.49e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000349;8.11e-34;19!CL:0002577;2.46e-25;3!CL:0002536;3.51e-17;2!CL:0002588;9.66e-17;2!CL:0002537;1.03e-15;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,6.73e-34,19;CL:0002577,2.37e-25,3;CL:0002536,2.44e-17,2;CL:0002588,7.02e-17,2;CL:0002537,1.03e-15,5 | |||
|ontology_enrichment_development_v019=UBERON:0007123;3.13e-07;5 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3112;3.12e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3112,1.69e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!1.29e-14!14;UBERON:0000158!1.29e-14!14;UBERON:0004119!4.68e-10!169;UBERON:0000925!4.68e-10!169;UBERON:0006595!4.68e-10!169;UBERON:0000478!7.41e-10!24;UBERON:0003124!3.46e-09!7;UBERON:0000161!2.08e-08!35;UBERON:0001987!3.33e-08!4;UBERON:0004340!3.33e-08!4;UBERON:0001004!1.30e-07!72;UBERON:0006562!1.59e-07!11;UBERON:0008814!2.40e-07!15;UBERON:0001310!3.92e-07!4;UBERON:0000305!3.96e-07!7;UBERON:0000166!6.93e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0000305;2.21e-29;7!UBERON:0005631;2.44e-29;10!UBERON:0000158;2.44e-29;10!UBERON:0000478;1.66e-26;24!UBERON:0001987;3.67e-19;4!UBERON:0010260;1.91e-08;9!UBERON:0002046;3.13e-07;5!UBERON:0002066;3.13e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,1.90e-46,14;UBERON:0000158,1.90e-46,14;UBERON:0000305,1.71e-29,7;UBERON:0000478,1.44e-26,24;UBERON:0004871,8.41e-26,8;UBERON:0001987,3.57e-19,4;UBERON:0004340,3.57e-19,4;UBERON:0003124,3.64e-19,7;UBERON:0004923,8.41e-09,66;UBERON:0010260,1.79e-08,9;UBERON:0002046,2.14e-07,5;UBERON:0004117,2.14e-07,5;UBERON:0007689,2.14e-07,5;UBERON:0007123,2.14e-07,5;UBERON:0003091,2.14e-07,5;UBERON:0002066,2.76e-07,5 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,4.15038607047327,1.58260186937072,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,0.511450247374121,0,0,0,0,0,0,0,0.351339142772504,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.560677600142307,0,0.24666754841716,0,0.134710672069688,0.326923806226917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453728732640084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.386521706326594,0.545492241181669,0.573609190778008,0.121973706129595,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.738155454624648,0,0,0,0,0,0,0,0,0.343135620597051,0.98775256867763,1.1240175325762,0.301586917234893,0.833296006426766,0,0,0,0,1.40890433082986,0,0,0,0,0,0,0,0,0,1.00789276919316,0.141775097242386,0.358234090811393,0.871901815541886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.299918973546171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.12189300012382,4.99306318531491,3.0239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0.40101294060657,0.184161977871793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.656029291399411,0.650756789328606,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0.192190067365106,0.255225424989168,0.910420027699949,0,0.31481234683064,0,0,0,0,0,0,0,0.949138274156178,0.38126038784765,0.255897791311334,0,0,0,0,0,0.235624804691373,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.608731130888112,1.239293992399,0.281695602532241,1.14729081763241,1.96498082026242,0.35667105148125,0,0,0,0,0,0.192444225451024,0,0,0,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0.490080431962063,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,16.4733694469006,4.45447021248958,23.6513740616409,0,0,0.667852230137435,0,0,0.398495976502139,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0,0,2.17499872630438,0.341380344856499,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0.153900517007594,0,0,0.0897576444097721,0,6.38002319463839,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247127877893006,0,0,0,0,0,0,0,0,0,0,0.189559738885464,0.300646838828985,0.207376382794494,0,0,0,0,0,0,0,0.0979923974143777,0.34823682632161,0,0,0,0,0,0.290967049465258,0,0,0,0,0,0,0,0,0.19980960958213,0,0.687219576995494,1.54435498075768,0,0,0.471388069233591,0,0,0,0,0,0,0,0.429765441419957,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0.0674035438541849,0.196854963029498,0,0,0,0,0,0,0,0,0,0,0,0,0.739202355635845,0,1.34340638123612,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0.342173675768659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.53168342911599,0,1.05180326298053,0.380805212168795,0.406870733204662,0,0.429642228169954,0,0,0,0,0,0,0,0.857766365499703,0.260994291965212,0,0,0,0,0,0.438568099157414,0.883445729729405,0.38582807654183,0,0,1.0362910251936,0,0,0,0,0,0,0,0,0,0,0,0,0,0.699397538597222,1.24415452006595,0,0,0,0,0.169732529954025,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294443155503077,0,0,0.346576998451015,0,0,0,0.0752103283492573,0,0,0,1.96526301012116,0,0,0,0,0,0,0,0,0,0.255524855279191,0,0,0,0,0.532214220975833,0,0,0,0,0,0.556157009460346,0.156986185701028,0,1.12108865325516,0,0,0,0,0,0,0,0,0.207216164163037,0.85359238546975,0.691259661814092,0,0,0,0,0.22910686854405,0,0,0,0,0,0,0,0,0,0,0,0,0.45178432815584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.352894871715692,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0.23806443146374,0.193766729508018,0.31037357147929,1.56984607612859,0,0,0.217716747896961,0.342233301085281,0.134704106029175,0.143444410785353,0,0.162806537221949,0.533636729388577,0,0,0,0,0,0,0,0 | |||
|short_description=p7@DSC3 | |||
}} |
Revision as of 17:11, 11 September 2013
Short description: | p7@DSC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_7_at_DSC3_5end |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | -113bp_to_ENST00000360428, ENST00000434452, NM_001941, NM_024423, uc002kwi.3, uc002kwj.3_5end |
EntrezGene: | DSC3 |
HGNC: | 3037 |
UniProt: | Q14574 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 6.73e-34 | 19 |
placental epithelial cell | 2.37e-25 | 3 |
amniotic epithelial cell | 2.44e-17 | 2 |
smooth muscle cell of the umbilical vein | 7.02e-17 | 2 |
amnion mesenchymal stem cell | 1.03e-15 | 5 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 1.90e-46 | 14 |
membranous layer | 1.90e-46 | 14 |
amnion | 1.71e-29 | 7 |
extraembryonic structure | 1.44e-26 | 24 |
somatic layer of lateral plate mesoderm | 8.41e-26 | 8 |
placenta | 3.57e-19 | 4 |
allantois | 3.57e-19 | 4 |
chorion | 3.64e-19 | 7 |
organ component layer | 8.41e-09 | 66 |
umbilical blood vessel | 1.79e-08 | 9 |
thyroid gland | 2.14e-07 | 5 |
pharyngeal pouch | 2.14e-07 | 5 |
thyroid diverticulum | 2.14e-07 | 5 |
pharyngeal pouch 2 | 2.14e-07 | 5 |
thyroid primordium | 2.14e-07 | 5 |
umbilical vein | 2.76e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
papillary adenocarcinoma | 1.69e-09 | 1 |
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