FFCP PHASE1:Hg19::chr17:7284402..7284414,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8711|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11940|TSSclassifier=S|UniProt=Q13470|association_with_transcript=37bp_to_ENST00000311668,uc002ggi.3,uc002ggj.3,uc010cmf.2_5end|coexpression_cluster_id=C511|description=CAGE_peak_1_at_TNK1_5end|id=chr17:7284402..7284414,+|ontology_enrichment_celltype=CL:0000066!3.93e-52!254;CL:0002076!2.62e-18!43;CL:0000223!8.80e-18!59;CL:0002251!2.76e-09!21;CL:0002368!7.76e-08!13|ontology_enrichment_celltype_v019=CL:0002076;5.04e-17;42!CL:0002251;3.47e-12;20!CL:0002368;7.98e-10;13!CL:1000507;2.28e-07;10!CL:1000494;2.28e-07;10!CL:1000497;4.25e-07;17!CL:0002518;4.25e-07;17|ontology_enrichment_celltype_v019_2=CL:0000066,6.63e-50,253;CL:0002076,1.02e-23,42;CL:0000223,2.38e-22,58;CL:0002251,2.30e-12,20;CL:0002368,4.47e-10,13;CL:0000076,3.48e-08,63;CL:1000507,2.85e-07,10;CL:1000494,2.85e-07,10;CL:1000497,3.66e-07,17;CL:0002518,3.66e-07,17|ontology_enrichment_development_v019=CL:0000223;4.02e-12;58!UBERON:0008947;1.92e-07;29!UBERON:0006595;9.24e-07;86|ontology_enrichment_disease=DOID:305!5.99e-25!106;DOID:0050687!5.65e-19!143;DOID:299!9.43e-09!25;DOID:1749!1.29e-08!14;DOID:162!4.95e-07!235|ontology_enrichment_disease_v019=DOID:1749;6.37e-11;14!DOID:299;4.04e-09;25!DOID:305;4.49e-08;106|ontology_enrichment_disease_v019_2=DOID:305,3.58e-26,106;DOID:0050687,2.09e-18,143;DOID:1749,8.24e-11,14;DOID:299,2.36e-09,25;DOID:162,4.10e-08,235;DOID:14566,1.78e-07,239|ontology_enrichment_uberon=UBERON:0004119!6.53e-25!169;UBERON:0000925!6.53e-25!169;UBERON:0006595!6.53e-25!169;UBERON:0001007!1.76e-18!155;UBERON:0001555!1.76e-18!155;UBERON:0007026!1.76e-18!155;UBERON:0004921!1.21e-17!129;UBERON:0004185!1.21e-17!129;UBERON:0000077!1.03e-15!130;UBERON:0001004!1.35e-14!72;UBERON:0001041!1.02e-13!98;UBERON:0000065!5.02e-12!53;UBERON:0005911!9.28e-12!82;UBERON:0000466!9.50e-12!126;UBERON:0005177!1.92e-11!107;UBERON:0008947!4.62e-11!38;UBERON:0003258!4.62e-11!38;UBERON:0000064!5.16e-11!219;UBERON:0000062!2.29e-10!511;UBERON:0000464!4.59e-10!104;UBERON:0009569!2.32e-09!113;UBERON:0000072!2.68e-09!46;UBERON:0001048!8.78e-09!168;UBERON:0001008!1.05e-08!45;UBERON:0000481!1.19e-08!347;UBERON:0006554!1.70e-08!44;UBERON:0005153!2.75e-08!37;UBERON:0000063!2.86e-08!97;UBERON:0005178!2.67e-07!34;UBERON:0002224!2.67e-07!34;UBERON:0002530!4.75e-07!59;UBERON:0005181!8.18e-07!35;UBERON:0000161!9.41e-07!35|ontology_enrichment_uberon_v019=UBERON:0006554;9.68e-10;30!UBERON:0001008;9.68e-10;30!UBERON:0000065;2.51e-09;44!UBERON:0000072;1.36e-08;37!UBERON:0001004;1.91e-07;65!UBERON:0004211;2.28e-07;10!UBERON:0009773;2.28e-07;10!UBERON:0001231;2.28e-07;10!UBERON:0004810;2.28e-07;10!UBERON:0005911;5.06e-07;36!UBERON:0004921;8.70e-07;33|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.08e-23,160;UBERON:0000925,1.08e-23,160;UBERON:0006595,1.08e-23,160;UBERON:0001007,2.37e-17,145;UBERON:0001555,2.37e-17,145;UBERON:0007026,2.37e-17,145;UBERON:0004921,3.63e-17,118;UBERON:0001041,5.65e-13,87;UBERON:0001004,9.23e-13,74;UBERON:0001008,1.27e-12,48;UBERON:0006554,2.40e-12,47;UBERON:0005177,2.54e-11,101;UBERON:0008947,6.24e-11,38;UBERON:0003258,6.24e-11,38;UBERON:0000065,7.08e-11,54;UBERON:0005911,1.37e-09,82;UBERON:0009569,7.10e-09,112;UBERON:0000072,2.85e-08,47;UBERON:0004810,2.85e-07,10|phase1_expression=0,0,0,0,0,0,0,0,0,3.93174298402414,16.7472280313383,3.71350332621293,4.48403862988371,0.123766352960047,0,0.672325146451775,0,0,0,0,0,0,0.286235987131057,0,0.125542639594803,0,0,0,0,0,0.154816123316076,3.67768489791571,11.4458249135735,11.0926203050036,0,0,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.02699751316684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.670700859703636,0.255725123687061,0.722878304769133,0.50133791063589,0.579386075843295,0.795285947051099,0,0.0945348171640679,0.443458794925128,0.263504357079378,0.982343066232845,13.4789256668241,10.0111799551796,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.33472061276467,1.20848795132744,3.80136052859256,1.46437234528902,0,0,0,0,0,0,0,0,0,0,13.9550096685611,0,0,0,0.573673241497627,0,0.560677600142307,1.06748995729705,0,0,0.269421344139376,0,0,0,0.234321431833797,0,0,0,0,0,0,0.204154171254893,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0.423863802319124,0.300091096084402,0,1.03056216018252,0.18611685633159,0,0.68205903612839,2.01947019395292,0.184099797284599,0.969876340912871,0.355009592516614,0.10075209822764,0.67824236924195,5.7978255948989,3.27295344709002,5.16248271700207,2.43947412259191,1.72288698817931,3.48581828608555,1.55491582523056,1.7662459561294,2.55484151353081,0,0,0,0,0,2.12952240071719,2.69735504124963,3.37415441836875,3.08823123650703,2.61455332910887,3.08451804844426,2.56179485504312,1.76599318612811,4.23221872641029,0,0,0,2.94017422771084,1.26755034821831,8.84544495009863,1.77236972004421,0,3.32068784066407,0.857839051492628,4.2802611309364,14.61222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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=8711 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11940 | |||
|TSSclassifier=S | |||
|UniProt=Q13470 | |||
|association_with_transcript=37bp_to_ENST00000311668,uc002ggi.3,uc002ggj.3,uc010cmf.2_5end | |||
|coexpression_cluster_id=C511 | |||
|description=CAGE_peak_1_at_TNK1_5end | |||
|id=chr17:7284402..7284414,+ | |||
|ontology_enrichment_celltype=CL:0000066!3.93e-52!254;CL:0002076!2.62e-18!43;CL:0000223!8.80e-18!59;CL:0002251!2.76e-09!21;CL:0002368!7.76e-08!13 | |||
|ontology_enrichment_celltype_v019=CL:0002076;5.04e-17;42!CL:0002251;3.47e-12;20!CL:0002368;7.98e-10;13!CL:1000507;2.28e-07;10!CL:1000494;2.28e-07;10!CL:1000497;4.25e-07;17!CL:0002518;4.25e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,6.63e-50,253;CL:0002076,1.02e-23,42;CL:0000223,2.38e-22,58;CL:0002251,2.30e-12,20;CL:0002368,4.47e-10,13;CL:0000076,3.48e-08,63;CL:1000507,2.85e-07,10;CL:1000494,2.85e-07,10;CL:1000497,3.66e-07,17;CL:0002518,3.66e-07,17 | |||
|ontology_enrichment_development_v019=CL:0000223;4.02e-12;58!UBERON:0008947;1.92e-07;29!UBERON:0006595;9.24e-07;86 | |||
|ontology_enrichment_disease=DOID:305!5.99e-25!106;DOID:0050687!5.65e-19!143;DOID:299!9.43e-09!25;DOID:1749!1.29e-08!14;DOID:162!4.95e-07!235 | |||
|ontology_enrichment_disease_v019=DOID:1749;6.37e-11;14!DOID:299;4.04e-09;25!DOID:305;4.49e-08;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.58e-26,106;DOID:0050687,2.09e-18,143;DOID:1749,8.24e-11,14;DOID:299,2.36e-09,25;DOID:162,4.10e-08,235;DOID:14566,1.78e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0004119!6.53e-25!169;UBERON:0000925!6.53e-25!169;UBERON:0006595!6.53e-25!169;UBERON:0001007!1.76e-18!155;UBERON:0001555!1.76e-18!155;UBERON:0007026!1.76e-18!155;UBERON:0004921!1.21e-17!129;UBERON:0004185!1.21e-17!129;UBERON:0000077!1.03e-15!130;UBERON:0001004!1.35e-14!72;UBERON:0001041!1.02e-13!98;UBERON:0000065!5.02e-12!53;UBERON:0005911!9.28e-12!82;UBERON:0000466!9.50e-12!126;UBERON:0005177!1.92e-11!107;UBERON:0008947!4.62e-11!38;UBERON:0003258!4.62e-11!38;UBERON:0000064!5.16e-11!219;UBERON:0000062!2.29e-10!511;UBERON:0000464!4.59e-10!104;UBERON:0009569!2.32e-09!113;UBERON:0000072!2.68e-09!46;UBERON:0001048!8.78e-09!168;UBERON:0001008!1.05e-08!45;UBERON:0000481!1.19e-08!347;UBERON:0006554!1.70e-08!44;UBERON:0005153!2.75e-08!37;UBERON:0000063!2.86e-08!97;UBERON:0005178!2.67e-07!34;UBERON:0002224!2.67e-07!34;UBERON:0002530!4.75e-07!59;UBERON:0005181!8.18e-07!35;UBERON:0000161!9.41e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;9.68e-10;30!UBERON:0001008;9.68e-10;30!UBERON:0000065;2.51e-09;44!UBERON:0000072;1.36e-08;37!UBERON:0001004;1.91e-07;65!UBERON:0004211;2.28e-07;10!UBERON:0009773;2.28e-07;10!UBERON:0001231;2.28e-07;10!UBERON:0004810;2.28e-07;10!UBERON:0005911;5.06e-07;36!UBERON:0004921;8.70e-07;33 | |||
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| |||
|short_description=p1@TNK1 | |||
}} |
Revision as of 15:34, 11 September 2013
Short description: | p1@TNK1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_TNK1_5end |
Coexpression cluster: | C511_Placental_Alveolar_Bronchial_amniotic_Gingival_Corneal_Mammary |
Association with transcript: | 37bp_to_ENST00000311668, uc002ggi.3, uc002ggj.3, uc010cmf.2_5end |
EntrezGene: | TNK1 |
HGNC: | 11940 |
UniProt: | Q13470 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 6.63e-50 | 253 |
endo-epithelial cell | 1.02e-23 | 42 |
endodermal cell | 2.38e-22 | 58 |
epithelial cell of alimentary canal | 2.30e-12 | 20 |
respiratory epithelial cell | 4.47e-10 | 13 |
squamous epithelial cell | 3.48e-08 | 63 |
kidney tubule cell | 2.85e-07 | 10 |
nephron tubule epithelial cell | 2.85e-07 | 10 |
kidney cell | 3.66e-07 | 17 |
kidney epithelial cell | 3.66e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.08e-23 | 160 |
endoderm | 1.08e-23 | 160 |
presumptive endoderm | 1.08e-23 | 160 |
digestive system | 2.37e-17 | 145 |
digestive tract | 2.37e-17 | 145 |
primitive gut | 2.37e-17 | 145 |
subdivision of digestive tract | 3.63e-17 | 118 |
foregut | 5.65e-13 | 87 |
respiratory system | 9.23e-13 | 74 |
renal system | 1.27e-12 | 48 |
urinary system structure | 2.40e-12 | 47 |
trunk region element | 2.54e-11 | 101 |
respiratory primordium | 6.24e-11 | 38 |
endoderm of foregut | 6.24e-11 | 38 |
respiratory tract | 7.08e-11 | 54 |
endo-epithelium | 1.37e-09 | 82 |
subdivision of trunk | 7.10e-09 | 112 |
segment of respiratory tract | 2.85e-08 | 47 |
nephron tubule epithelium | 2.85e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.58e-26 | 106 |
cell type cancer | 2.09e-18 | 143 |
squamous cell carcinoma | 8.24e-11 | 14 |
adenocarcinoma | 2.36e-09 | 25 |
cancer | 4.10e-08 | 235 |
disease of cellular proliferation | 1.78e-07 | 239 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.