FFCP PHASE1:Hg19::chr17:48611940..48611947,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=55040|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=18235|TSSclassifier=S|UniProt=D6RFG3|association_with_transcript=21bp_to_ENST00000507467_5end|coexpression_cluster_id=C1217|description=CAGE_peak_5_at_EPN3_5end|id=chr17:48611940..48611947,+|ontology_enrichment_celltype=CL:0002159!1.19e-18!13;CL:0002076!7.70e-14!43;CL:0000066!7.17e-12!254;CL:0002368!1.11e-11!13;CL:0002327!2.04e-10!4;CL:0002202!5.45e-10!9;CL:0002632!5.45e-10!9;CL:0002328!7.37e-09!3;CL:0000223!8.40e-09!59;CL:0002166!1.51e-08!3;CL:0002077!1.80e-08!33;CL:0000068!2.72e-08!3;CL:0000069!2.72e-08!3;CL:0000307!2.72e-08!3;CL:0000377!2.72e-08!3;CL:0000362!3.29e-08!8;CL:0000240!2.53e-07!6;CL:0000311!2.53e-07!6;CL:0000079!2.53e-07!6;CL:0000237!2.53e-07!6;CL:0000036!2.53e-07!6;CL:0000357!2.53e-07!6;CL:0000114!2.53e-07!6|ontology_enrichment_celltype_v019=CL:0002159;9.00e-56;14!CL:0002328;1.15e-37;3!CL:0000362;1.56e-34;9!CL:0002327;8.88e-29;4!CL:0000317;9.83e-26;2!CL:1000448;9.83e-26;2!CL:0002308;9.83e-26;2!CL:0000575;9.83e-26;2!CL:0002140;9.83e-26;2!CL:0002368;8.89e-24;13!CL:0000312;3.59e-23;5!CL:0002202;2.68e-22;9!CL:0002632;2.68e-22;9!CL:0002077;1.29e-21;34!CL:0000240;2.00e-19;6!CL:0000311;2.00e-19;6!CL:0000079;2.00e-19;6!CL:0000237;2.00e-19;6!CL:0000622;6.79e-11;5!CL:0000154;3.14e-09;6|ontology_enrichment_celltype_v019_2=CL:0002159,1.05e-55,14;CL:0002328,3.06e-38,3;CL:0000362,2.30e-34,9;CL:0002327,1.24e-28,4;CL:0000575,9.87e-26,2;CL:0000317,1.44e-25,2;CL:1000448,1.44e-25,2;CL:0002308,1.44e-25,2;CL:0002140,1.44e-25,2;CL:0002368,6.86e-24,13;CL:0000312,4.36e-23,5;CL:0002077,1.44e-22,34;CL:0002202,2.15e-22,9;CL:0002632,2.15e-22,9;CL:0000240,2.34e-19,6;CL:0000311,2.34e-19,6;CL:0000079,2.34e-19,6;CL:0000237,2.34e-19,6;CL:0000036,2.34e-19,6;CL:0000357,2.34e-19,6;CL:0000114,2.34e-19,6;CL:0000622,7.89e-11,5;CL:0000066,8.01e-11,253;CL:0000221,5.98e-10,72;CL:0000154,3.56e-09,6;CL:0000076,4.39e-09,63;CL:0002076,2.28e-07,42|ontology_enrichment_development_v019=CL:0000357;2.00e-19;6!CL:0000114;2.00e-19;6|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001911!2.04e-10!4;UBERON:0005333!2.04e-10!4;UBERON:0008425!2.04e-10!4;UBERON:0005311!2.04e-10!4;UBERON:0000064!3.64e-09!219;UBERON:0004815!7.37e-09!3;UBERON:0002031!7.37e-09!3;UBERON:0000344!1.20e-08!12;UBERON:0000062!3.35e-08!511;UBERON:0004119!5.28e-08!169;UBERON:0000925!5.28e-08!169;UBERON:0006595!5.28e-08!169;UBERON:0007196!5.85e-08!14;UBERON:0001558!5.85e-08!14;UBERON:0003729!9.44e-08!5;UBERON:0005631!5.83e-07!14;UBERON:0000158!5.83e-07!14;UBERON:0000161!8.54e-07!35;UBERON:0004121!8.87e-07!169|ontology_enrichment_uberon_v019=UBERON:0004815;1.15e-37;3!UBERON:0002031;1.15e-37;3!UBERON:0001911;8.88e-29;4!UBERON:0002419;9.83e-26;2!UBERON:0007771;9.83e-26;2!UBERON:0003297;9.83e-26;2!UBERON:0001821;9.83e-26;2!UBERON:0003487;9.83e-26;2!UBERON:0001820;9.83e-26;2!UBERON:0002185;6.56e-23;5!UBERON:0001003;9.25e-21;15!UBERON:0007376;9.25e-21;15!UBERON:0000485;1.47e-16;7!UBERON:0007196;1.64e-13;15!UBERON:0001558;1.64e-13;15!UBERON:0000964;2.21e-13;4!UBERON:0010409;2.21e-13;4!UBERON:0010371;1.11e-09;31!UBERON:0002365;1.12e-09;31!UBERON:0002330;1.12e-09;31!UBERON:0003102;8.93e-09;50!UBERON:0002097;5.68e-07;41|ontology_enrichment_uberon_v019_2=UBERON:0004815,3.06e-38,3;UBERON:0002031,3.06e-38,3;UBERON:0001911,1.24e-28,4;UBERON:0005333,1.24e-28,4;UBERON:0008425,1.24e-28,4;UBERON:0005311,1.24e-28,4;UBERON:0002419,1.44e-25,2;UBERON:0007771,1.44e-25,2;UBERON:0003297,1.44e-25,2;UBERON:0001821,1.44e-25,2;UBERON:0003487,1.44e-25,2;UBERON:0001820,1.44e-25,2;UBERON:0005089,1.44e-25,2;UBERON:0005088,1.44e-25,2;UBERON:0002185,2.99e-23,5;UBERON:0001003,1.16e-20,15;UBERON:0007376,1.16e-20,15;UBERON:0007383,1.16e-20,15;UBERON:0005085,5.00e-19,31;UBERON:0005157,3.32e-16,47;UBERON:0000076,1.16e-14,8;UBERON:0007196,1.44e-13,15;UBERON:0001558,1.44e-13,15;UBERON:0000964,2.21e-13,4;UBERON:0010409,2.21e-13,4;UBERON:0004348,2.21e-13,4;UBERON:0005427,2.21e-13,4;UBERON:0000485,3.30e-13,9;UBERON:0005153,7.00e-12,37;UBERON:0010371,1.23e-10,104;UBERON:0002365,5.56e-10,31;UBERON:0002330,5.56e-10,31;UBERON:0001048,5.18e-08,160;UBERON:0002097,1.57e-07,41;UBERON:0003102,3.19e-07,99|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.83884244895785,1.204823675113,1.47901604066715,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,1.09288586487763,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773043412653187,0,0.573609190778008,0,0,0,0.207322110030741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.52425656439839,1.1240175325762,1.40740561376283,0.833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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=55040 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18235 | |||
|TSSclassifier=S | |||
|UniProt=D6RFG3 | |||
|association_with_transcript=21bp_to_ENST00000507467_5end | |||
|coexpression_cluster_id=C1217 | |||
|description=CAGE_peak_5_at_EPN3_5end | |||
|id=chr17:48611940..48611947,+ | |||
|ontology_enrichment_celltype=CL:0002159!1.19e-18!13;CL:0002076!7.70e-14!43;CL:0000066!7.17e-12!254;CL:0002368!1.11e-11!13;CL:0002327!2.04e-10!4;CL:0002202!5.45e-10!9;CL:0002632!5.45e-10!9;CL:0002328!7.37e-09!3;CL:0000223!8.40e-09!59;CL:0002166!1.51e-08!3;CL:0002077!1.80e-08!33;CL:0000068!2.72e-08!3;CL:0000069!2.72e-08!3;CL:0000307!2.72e-08!3;CL:0000377!2.72e-08!3;CL:0000362!3.29e-08!8;CL:0000240!2.53e-07!6;CL:0000311!2.53e-07!6;CL:0000079!2.53e-07!6;CL:0000237!2.53e-07!6;CL:0000036!2.53e-07!6;CL:0000357!2.53e-07!6;CL:0000114!2.53e-07!6 | |||
|ontology_enrichment_celltype_v019=CL:0002159;9.00e-56;14!CL:0002328;1.15e-37;3!CL:0000362;1.56e-34;9!CL:0002327;8.88e-29;4!CL:0000317;9.83e-26;2!CL:1000448;9.83e-26;2!CL:0002308;9.83e-26;2!CL:0000575;9.83e-26;2!CL:0002140;9.83e-26;2!CL:0002368;8.89e-24;13!CL:0000312;3.59e-23;5!CL:0002202;2.68e-22;9!CL:0002632;2.68e-22;9!CL:0002077;1.29e-21;34!CL:0000240;2.00e-19;6!CL:0000311;2.00e-19;6!CL:0000079;2.00e-19;6!CL:0000237;2.00e-19;6!CL:0000622;6.79e-11;5!CL:0000154;3.14e-09;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002159,1.05e-55,14;CL:0002328,3.06e-38,3;CL:0000362,2.30e-34,9;CL:0002327,1.24e-28,4;CL:0000575,9.87e-26,2;CL:0000317,1.44e-25,2;CL:1000448,1.44e-25,2;CL:0002308,1.44e-25,2;CL:0002140,1.44e-25,2;CL:0002368,6.86e-24,13;CL:0000312,4.36e-23,5;CL:0002077,1.44e-22,34;CL:0002202,2.15e-22,9;CL:0002632,2.15e-22,9;CL:0000240,2.34e-19,6;CL:0000311,2.34e-19,6;CL:0000079,2.34e-19,6;CL:0000237,2.34e-19,6;CL:0000036,2.34e-19,6;CL:0000357,2.34e-19,6;CL:0000114,2.34e-19,6;CL:0000622,7.89e-11,5;CL:0000066,8.01e-11,253;CL:0000221,5.98e-10,72;CL:0000154,3.56e-09,6;CL:0000076,4.39e-09,63;CL:0002076,2.28e-07,42 | |||
|ontology_enrichment_development_v019=CL:0000357;2.00e-19;6!CL:0000114;2.00e-19;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001911!2.04e-10!4;UBERON:0005333!2.04e-10!4;UBERON:0008425!2.04e-10!4;UBERON:0005311!2.04e-10!4;UBERON:0000064!3.64e-09!219;UBERON:0004815!7.37e-09!3;UBERON:0002031!7.37e-09!3;UBERON:0000344!1.20e-08!12;UBERON:0000062!3.35e-08!511;UBERON:0004119!5.28e-08!169;UBERON:0000925!5.28e-08!169;UBERON:0006595!5.28e-08!169;UBERON:0007196!5.85e-08!14;UBERON:0001558!5.85e-08!14;UBERON:0003729!9.44e-08!5;UBERON:0005631!5.83e-07!14;UBERON:0000158!5.83e-07!14;UBERON:0000161!8.54e-07!35;UBERON:0004121!8.87e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;1.15e-37;3!UBERON:0002031;1.15e-37;3!UBERON:0001911;8.88e-29;4!UBERON:0002419;9.83e-26;2!UBERON:0007771;9.83e-26;2!UBERON:0003297;9.83e-26;2!UBERON:0001821;9.83e-26;2!UBERON:0003487;9.83e-26;2!UBERON:0001820;9.83e-26;2!UBERON:0002185;6.56e-23;5!UBERON:0001003;9.25e-21;15!UBERON:0007376;9.25e-21;15!UBERON:0000485;1.47e-16;7!UBERON:0007196;1.64e-13;15!UBERON:0001558;1.64e-13;15!UBERON:0000964;2.21e-13;4!UBERON:0010409;2.21e-13;4!UBERON:0010371;1.11e-09;31!UBERON:0002365;1.12e-09;31!UBERON:0002330;1.12e-09;31!UBERON:0003102;8.93e-09;50!UBERON:0002097;5.68e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,3.06e-38,3;UBERON:0002031,3.06e-38,3;UBERON:0001911,1.24e-28,4;UBERON:0005333,1.24e-28,4;UBERON:0008425,1.24e-28,4;UBERON:0005311,1.24e-28,4;UBERON:0002419,1.44e-25,2;UBERON:0007771,1.44e-25,2;UBERON:0003297,1.44e-25,2;UBERON:0001821,1.44e-25,2;UBERON:0003487,1.44e-25,2;UBERON:0001820,1.44e-25,2;UBERON:0005089,1.44e-25,2;UBERON:0005088,1.44e-25,2;UBERON:0002185,2.99e-23,5;UBERON:0001003,1.16e-20,15;UBERON:0007376,1.16e-20,15;UBERON:0007383,1.16e-20,15;UBERON:0005085,5.00e-19,31;UBERON:0005157,3.32e-16,47;UBERON:0000076,1.16e-14,8;UBERON:0007196,1.44e-13,15;UBERON:0001558,1.44e-13,15;UBERON:0000964,2.21e-13,4;UBERON:0010409,2.21e-13,4;UBERON:0004348,2.21e-13,4;UBERON:0005427,2.21e-13,4;UBERON:0000485,3.30e-13,9;UBERON:0005153,7.00e-12,37;UBERON:0010371,1.23e-10,104;UBERON:0002365,5.56e-10,31;UBERON:0002330,5.56e-10,31;UBERON:0001048,5.18e-08,160;UBERON:0002097,1.57e-07,41;UBERON:0003102,3.19e-07,99 | |||
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|short_description=p5@EPN3 | |||
}} |
Revision as of 14:31, 11 September 2013
Short description: | p5@EPN3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_5_at_EPN3_5end |
Coexpression cluster: | C1217_Mammary_Keratinocyte_Mallassezderived_Bronchial_Tracheal_Gingival_Sebocyte |
Association with transcript: | 21bp_to_ENST00000507467_5end |
EntrezGene: | EPN3 |
HGNC: | 18235 |
UniProt: | D6RFG3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
general ecto-epithelial cell | 1.05e-55 | 14 |
bronchial epithelial cell | 3.06e-38 | 3 |
epidermal cell | 2.30e-34 | 9 |
mammary gland epithelial cell | 1.24e-28 | 4 |
corneal epithelial cell | 9.87e-26 | 2 |
sebum secreting cell | 1.44e-25 | 2 |
epithelial cell of sweat gland | 1.44e-25 | 2 |
epithelial cell of skin gland | 1.44e-25 | 2 |
acinar cell of sebaceous gland | 1.44e-25 | 2 |
respiratory epithelial cell | 6.86e-24 | 13 |
keratinocyte | 4.36e-23 | 5 |
ecto-epithelial cell | 1.44e-22 | 34 |
epithelial cell of tracheobronchial tree | 2.15e-22 | 9 |
epithelial cell of lower respiratory tract | 2.15e-22 | 9 |
stratified squamous epithelial cell | 2.34e-19 | 6 |
keratin accumulating cell | 2.34e-19 | 6 |
stratified epithelial cell | 2.34e-19 | 6 |
keratinizing barrier epithelial cell | 2.34e-19 | 6 |
epithelial fate stem cell | 2.34e-19 | 6 |
stratified epithelial stem cell | 2.34e-19 | 6 |
surface ectodermal cell | 2.34e-19 | 6 |
acinar cell | 7.89e-11 | 5 |
epithelial cell | 8.01e-11 | 253 |
ectodermal cell | 5.98e-10 | 72 |
protein secreting cell | 3.56e-09 | 6 |
squamous epithelial cell | 4.39e-09 | 63 |
endo-epithelial cell | 2.28e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 3.06e-38 | 3 |
epithelium of bronchus | 3.06e-38 | 3 |
mammary gland | 1.24e-28 | 4 |
mammary bud | 1.24e-28 | 4 |
mammary ridge | 1.24e-28 | 4 |
mammary placode | 1.24e-28 | 4 |
skin gland | 1.44e-25 | 2 |
epidermis gland | 1.44e-25 | 2 |
gland of integumental system | 1.44e-25 | 2 |
sebaceous gland | 1.44e-25 | 2 |
skin sebaceous gland | 1.44e-25 | 2 |
sweat gland | 1.44e-25 | 2 |
sweat gland placode | 1.44e-25 | 2 |
sebaceous gland placode | 1.44e-25 | 2 |
bronchus | 2.99e-23 | 5 |
skin epidermis | 1.16e-20 | 15 |
outer epithelium | 1.16e-20 | 15 |
enveloping layer of ectoderm | 1.16e-20 | 15 |
ectodermal placode | 5.00e-19 | 31 |
epithelial fold | 3.32e-16 | 47 |
external ectoderm | 1.16e-14 | 8 |
tracheobronchial tree | 1.44e-13 | 15 |
lower respiratory tract | 1.44e-13 | 15 |
cornea | 2.21e-13 | 4 |
eye surface | 2.21e-13 | 4 |
optic eminence | 2.21e-13 | 4 |
corneal primordium | 2.21e-13 | 4 |
simple columnar epithelium | 3.30e-13 | 9 |
epithelial bud | 7.00e-12 | 37 |
ecto-epithelium | 1.23e-10 | 104 |
exocrine gland | 5.56e-10 | 31 |
exocrine system | 5.56e-10 | 31 |
primordium | 5.18e-08 | 160 |
skin of body | 1.57e-07 | 41 |
surface structure | 3.19e-07 | 99 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.