FFCP PHASE1:Hg19::chr17:48546232..48546247,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1101|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=1909|TSSclassifier=S|UniProt=O15335|association_with_transcript=-5bp_to_NM_001267,uc010dbr.2,uc010dbs.2_5end|coexpression_cluster_id=C120|description=CAGE_peak_1_at_CHAD_5end|id=chr17:48546232..48546247,-|ontology_enrichment_celltype=CL:0000236!5.99e-11!14|ontology_enrichment_celltype_v019=CL:0000236;1.88e-07;13|ontology_enrichment_celltype_v019_2=CL:0000236,5.91e-07,14|ontology_enrichment_development_v019=UBERON:0006601;5.03e-18;82!UBERON:0006241;5.34e-08;3!UBERON:0003057;5.34e-08;3!UBERON:0002532;1.64e-07;206!UBERON:0010316;1.64e-07;206|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007023!3.15e-76!115;UBERON:0001049!8.04e-48!57;UBERON:0005068!8.04e-48!57;UBERON:0006241!8.04e-48!57;UBERON:0007135!8.04e-48!57;UBERON:0002616!1.02e-38!59;UBERON:0003080!6.33e-38!42;UBERON:0001017!7.08e-38!82;UBERON:0002780!1.22e-36!41;UBERON:0001890!1.22e-36!41;UBERON:0006240!1.22e-36!41;UBERON:0005743!2.29e-35!86;UBERON:0003075!4.37e-35!86;UBERON:0007284!4.37e-35!86;UBERON:0000955!4.03e-34!69;UBERON:0006238!4.03e-34!69;UBERON:0001893!1.69e-33!34;UBERON:0002020!1.78e-33!34;UBERON:0003528!1.78e-33!34;UBERON:0002346!8.56e-33!90;UBERON:0002791!3.52e-32!33;UBERON:0000073!5.92e-32!94;UBERON:0001016!5.92e-32!94;UBERON:0001869!4.16e-31!32;UBERON:0002619!1.20e-25!22;UBERON:0000153!6.45e-23!129;UBERON:0007811!6.45e-23!129;UBERON:0001950!8.83e-23!20;UBERON:0003056!1.21e-22!61;UBERON:0000956!6.81e-22!25;UBERON:0000203!6.81e-22!25;UBERON:0004121!1.57e-20!169;UBERON:0000033!2.61e-20!123;UBERON:0000924!1.24e-19!173;UBERON:0006601!1.24e-19!173;UBERON:0002420!6.72e-14!9;UBERON:0007245!6.72e-14!9;UBERON:0010009!6.72e-14!9;UBERON:0010011!6.72e-14!9;UBERON:0000454!6.72e-14!9;UBERON:0002308!2.16e-13!9;UBERON:0000125!2.16e-13!9;UBERON:0001871!3.14e-12!7;UBERON:0000025!8.63e-12!194;UBERON:0002298!1.01e-11!8;UBERON:0003076!7.33e-11!15;UBERON:0003057!7.33e-11!15;UBERON:0009663!7.79e-11!7;UBERON:0004111!7.80e-11!241;UBERON:0000349!4.37e-09!5;UBERON:0000477!1.07e-08!286;UBERON:0004732!3.30e-08!13;UBERON:0001872!7.86e-08!5;UBERON:0000369!1.50e-07!4;UBERON:0002435!1.50e-07!4;UBERON:0000204!1.50e-07!4;UBERON:0010082!1.50e-07!4;UBERON:0000064!3.11e-07!219;UBERON:0004733!3.42e-07!12;UBERON:0002028!3.42e-07!12;UBERON:0007277!3.42e-07!12;UBERON:0000483!5.49e-07!309;UBERON:0000200!6.74e-07!6;UBERON:0000475!9.07e-07!365;UBERON:0000119!9.13e-07!312|ontology_enrichment_uberon_v019=UBERON:0003528;6.47e-33;34!UBERON:0002020;6.47e-33;34!UBERON:0001893;1.28e-32;34!UBERON:0001869;2.82e-30;32!UBERON:0002791;3.57e-30;32!UBERON:0002619;2.22e-25;22!UBERON:0000073;2.56e-25;53!UBERON:0002616;2.56e-25;53!UBERON:0002780;3.78e-25;41!UBERON:0001890;3.78e-25;41!UBERON:0000956;6.64e-22;25!UBERON:0000203;6.64e-22;25!UBERON:0001950;1.80e-21;20!UBERON:0002420;5.53e-20;9!UBERON:0007245;5.53e-20;9!UBERON:0010009;5.53e-20;9!UBERON:0010011;5.53e-20;9!UBERON:0000454;5.53e-20;9!UBERON:0000125;3.09e-19;9!UBERON:0002308;3.09e-19;9!UBERON:0007023;2.89e-18;114!UBERON:0001017;9.74e-18;75!UBERON:0000955;5.67e-16;68!UBERON:0009663;1.80e-15;7!UBERON:0001016;1.49e-14;83!UBERON:0002298;6.29e-13;6!UBERON:0000349;1.08e-12;5!UBERON:0004732;6.02e-12;13!UBERON:0001871;6.30e-12;6!UBERON:0004733;2.03e-10;12!UBERON:0002028;2.03e-10;12!UBERON:0000369;2.07e-10;4!UBERON:0002435;2.07e-10;4!UBERON:0000204;2.07e-10;4!UBERON:0000200;1.14e-09;6!UBERON:0003978;2.22e-08;3!UBERON:0000946;2.22e-08;3!UBERON:0005383;3.04e-08;3!UBERON:0005382;3.04e-08;3!UBERON:0002240;5.34e-08;3!UBERON:0005174;5.34e-08;3!UBERON:0001137;5.34e-08;3!UBERON:0011216;1.48e-07;132!UBERON:0001872;1.95e-07;5!UBERON:0000988;2.30e-07;3!UBERON:0001896;3.22e-07;3!UBERON:0005290;3.22e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.09e-68,114;UBERON:0001049,1.48e-50,56;UBERON:0005068,1.48e-50,56;UBERON:0006241,1.48e-50,56;UBERON:0007135,1.48e-50,56;UBERON:0000073,7.56e-45,53;UBERON:0002616,7.56e-45,53;UBERON:0003075,1.48e-39,82;UBERON:0007284,1.48e-39,82;UBERON:0001017,1.85e-39,81;UBERON:0001893,6.96e-38,34;UBERON:0003528,7.44e-38,34;UBERON:0002020,7.44e-38,34;UBERON:0002346,3.58e-37,86;UBERON:0000955,1.35e-36,68;UBERON:0006238,1.35e-36,68;UBERON:0001016,3.19e-36,89;UBERON:0002780,2.29e-35,41;UBERON:0001890,2.29e-35,41;UBERON:0003080,2.29e-35,41;UBERON:0006240,2.29e-35,41;UBERON:0001869,1.64e-34,32;UBERON:0002791,2.99e-34,32;UBERON:0010371,1.60e-30,104;UBERON:0010314,1.18e-26,132;UBERON:0002619,2.37e-25,22;UBERON:0004121,1.24e-24,171;UBERON:0000924,1.24e-24,171;UBERON:0006601,1.24e-24,171;UBERON:0003056,4.66e-23,61;UBERON:0000956,7.03e-22,25;UBERON:0000203,7.03e-22,25;UBERON:0001950,1.81e-21,20;UBERON:0002420,1.03e-19,9;UBERON:0007245,1.03e-19,9;UBERON:0010009,1.03e-19,9;UBERON:0010011,1.03e-19,9;UBERON:0000454,1.03e-19,9;UBERON:0000125,5.76e-19,9;UBERON:0002308,5.76e-19,9;UBERON:0011216,3.43e-18,223;UBERON:0003076,6.24e-16,15;UBERON:00030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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1101 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1909 | |||
|TSSclassifier=S | |||
|UniProt=O15335 | |||
|association_with_transcript=-5bp_to_NM_001267,uc010dbr.2,uc010dbs.2_5end | |||
|coexpression_cluster_id=C120 | |||
|description=CAGE_peak_1_at_CHAD_5end | |||
|id=chr17:48546232..48546247,- | |||
|ontology_enrichment_celltype=CL:0000236!5.99e-11!14 | |||
|ontology_enrichment_celltype_v019=CL:0000236;1.88e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,5.91e-07,14 | |||
|ontology_enrichment_development_v019=UBERON:0006601;5.03e-18;82!UBERON:0006241;5.34e-08;3!UBERON:0003057;5.34e-08;3!UBERON:0002532;1.64e-07;206!UBERON:0010316;1.64e-07;206 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.15e-76!115;UBERON:0001049!8.04e-48!57;UBERON:0005068!8.04e-48!57;UBERON:0006241!8.04e-48!57;UBERON:0007135!8.04e-48!57;UBERON:0002616!1.02e-38!59;UBERON:0003080!6.33e-38!42;UBERON:0001017!7.08e-38!82;UBERON:0002780!1.22e-36!41;UBERON:0001890!1.22e-36!41;UBERON:0006240!1.22e-36!41;UBERON:0005743!2.29e-35!86;UBERON:0003075!4.37e-35!86;UBERON:0007284!4.37e-35!86;UBERON:0000955!4.03e-34!69;UBERON:0006238!4.03e-34!69;UBERON:0001893!1.69e-33!34;UBERON:0002020!1.78e-33!34;UBERON:0003528!1.78e-33!34;UBERON:0002346!8.56e-33!90;UBERON:0002791!3.52e-32!33;UBERON:0000073!5.92e-32!94;UBERON:0001016!5.92e-32!94;UBERON:0001869!4.16e-31!32;UBERON:0002619!1.20e-25!22;UBERON:0000153!6.45e-23!129;UBERON:0007811!6.45e-23!129;UBERON:0001950!8.83e-23!20;UBERON:0003056!1.21e-22!61;UBERON:0000956!6.81e-22!25;UBERON:0000203!6.81e-22!25;UBERON:0004121!1.57e-20!169;UBERON:0000033!2.61e-20!123;UBERON:0000924!1.24e-19!173;UBERON:0006601!1.24e-19!173;UBERON:0002420!6.72e-14!9;UBERON:0007245!6.72e-14!9;UBERON:0010009!6.72e-14!9;UBERON:0010011!6.72e-14!9;UBERON:0000454!6.72e-14!9;UBERON:0002308!2.16e-13!9;UBERON:0000125!2.16e-13!9;UBERON:0001871!3.14e-12!7;UBERON:0000025!8.63e-12!194;UBERON:0002298!1.01e-11!8;UBERON:0003076!7.33e-11!15;UBERON:0003057!7.33e-11!15;UBERON:0009663!7.79e-11!7;UBERON:0004111!7.80e-11!241;UBERON:0000349!4.37e-09!5;UBERON:0000477!1.07e-08!286;UBERON:0004732!3.30e-08!13;UBERON:0001872!7.86e-08!5;UBERON:0000369!1.50e-07!4;UBERON:0002435!1.50e-07!4;UBERON:0000204!1.50e-07!4;UBERON:0010082!1.50e-07!4;UBERON:0000064!3.11e-07!219;UBERON:0004733!3.42e-07!12;UBERON:0002028!3.42e-07!12;UBERON:0007277!3.42e-07!12;UBERON:0000483!5.49e-07!309;UBERON:0000200!6.74e-07!6;UBERON:0000475!9.07e-07!365;UBERON:0000119!9.13e-07!312 | |||
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|short_description=p1@CHAD | |||
}} |
Revision as of 14:31, 11 September 2013
Short description: | p1@CHAD |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_CHAD_5end |
Coexpression cluster: | C120_immature_salivary_tongue_skin_cervical_CD14_CD34 |
Association with transcript: | -5bp_to_NM_001267, uc010dbr.2, uc010dbs.2_5end |
EntrezGene: | CHAD |
HGNC: | 1909 |
UniProt: | O15335 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 5.91e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.