FFCP PHASE1:Hg19::chr13:51913806..51913817,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=647174|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=24774|TSSclassifier=S|UniProt=E5RG55|association_with_transcript=-8bp_to_ENST00000419898_5end|coexpression_cluster_id=C753|description=CAGE_peak_2_at_SERPINE3_5end|id=chr13:51913806..51913817,+|ontology_enrichment_celltype=CL:0002586!5.78e-51!3;CL:0000149!1.90e-38!4;CL:0000147!2.01e-19!14;CL:0000632!1.33e-09!2;CL:0000077!1.79e-08!19;CL:0000325!3.64e-07!39|ontology_enrichment_celltype_v019=CL:0002586;3.27e-147;3!CL:0000149;8.91e-111;4!CL:0000147;1.46e-32;14|ontology_enrichment_celltype_v019_2=CL:0002586,3.27e-147,3;CL:0000149,8.91e-111,4;CL:0000147,1.46e-32,14|ontology_enrichment_development_v019=UBERON:0003056;1.12e-17;3|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000966!7.03e-54!5;UBERON:0005388!7.03e-54!5;UBERON:0001802!7.03e-54!5;UBERON:0001781!5.78e-51!3;UBERON:0001782!5.78e-51!3;UBERON:0005424!5.78e-51!3;UBERON:0001301!1.03e-17!1;UBERON:0000019!1.61e-14!19;UBERON:0000047!1.61e-14!19;UBERON:0004088!1.61e-14!19;UBERON:0003072!1.61e-14!19;UBERON:0003071!1.61e-14!19;UBERON:0004128!1.61e-14!19;UBERON:0007625!1.87e-14!11;UBERON:0000970!8.25e-14!20;UBERON:0002104!3.61e-13!21;UBERON:0001456!3.61e-13!21;UBERON:0000020!4.73e-12!23;UBERON:0001032!1.46e-11!24;UBERON:0004456!1.46e-11!24;UBERON:0005085!1.28e-09!29;UBERON:0003135!6.94e-07!11;UBERON:0006947!9.12e-07!3;UBERON:0004054!9.12e-07!3|ontology_enrichment_uberon_v019=UBERON:0000966;1.50e-156;5!UBERON:0005388;1.50e-156;5!UBERON:0001802;1.50e-156;5!UBERON:0001781;3.27e-147;3!UBERON:0001782;3.27e-147;3!UBERON:0000019;3.83e-42;19!UBERON:0000047;3.83e-42;19!UBERON:0004088;3.83e-42;19!UBERON:0010230;3.83e-42;19!UBERON:0007625;4.07e-41;11!UBERON:0000970;4.28e-40;20!UBERON:0002104;3.06e-38;21!UBERON:0001456;3.06e-38;21!UBERON:0000020;5.16e-35;23!UBERON:0001032;1.33e-33;24!UBERON:0004456;1.33e-33;24!UBERON:0000033;9.32e-16;50!UBERON:0010371;3.77e-14;31!UBERON:0001444;5.77e-14;48!UBERON:0007811;1.35e-09;52!UBERON:0000153;1.97e-09;54|ontology_enrichment_uberon_v019_2=UBERON:0001782,3.27e-147,3;UBERON:0005424,3.27e-147,3;UBERON:0000966,1.07e-130,6;UBERON:0005388,1.07e-130,6;UBERON:0001802,1.07e-130,6;UBERON:0001781,8.91e-111,4;UBERON:0007625,4.07e-41,11;UBERON:0000019,4.28e-40,20;UBERON:0000047,4.28e-40,20;UBERON:0010312,4.28e-40,20;UBERON:0004088,4.28e-40,20;UBERON:0010230,4.28e-40,20;UBERON:0003072,4.28e-40,20;UBERON:0004128,4.28e-40,20;UBERON:0003071,4.28e-40,20;UBERON:0000970,3.06e-38,21;UBERON:0002104,3.06e-38,21;UBERON:0001456,1.49e-36,22;UBERON:0000020,1.33e-33,24;UBERON:0001032,1.33e-33,24;UBERON:0004456,1.33e-33,24;UBERON:0005085,2.93e-26,31;UBERON:0001444,5.55e-17,49;UBERON:0000033,5.62e-15,56;UBERON:0000153,1.29e-13,62;UBERON:0007811,1.29e-13,62;UBERON:0003056,1.29e-13,61;UBERON:0003075,2.17e-10,82;UBERON:0007284,2.17e-10,82;UBERON:0002346,5.98e-10,86;UBERON:0010371,2.22e-08,104;UBERON:0004923,1.18e-07,66;UBERON:0010314,8.99e-07,132|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.904318131178758,0,0.699810938274399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.0789563809358,31.4894059871718,96.3120048206337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07281978112303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p2@SERPINE3}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=647174 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24774 | |||
|TSSclassifier=S | |||
|UniProt=E5RG55 | |||
|association_with_transcript=-8bp_to_ENST00000419898_5end | |||
|coexpression_cluster_id=C753 | |||
|description=CAGE_peak_2_at_SERPINE3_5end | |||
|id=chr13:51913806..51913817,+ | |||
|ontology_enrichment_celltype=CL:0002586!5.78e-51!3;CL:0000149!1.90e-38!4;CL:0000147!2.01e-19!14;CL:0000632!1.33e-09!2;CL:0000077!1.79e-08!19;CL:0000325!3.64e-07!39 | |||
|ontology_enrichment_celltype_v019=CL:0002586;3.27e-147;3!CL:0000149;8.91e-111;4!CL:0000147;1.46e-32;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0002586,3.27e-147,3;CL:0000149,8.91e-111,4;CL:0000147,1.46e-32,14 | |||
|ontology_enrichment_development_v019=UBERON:0003056;1.12e-17;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000966!7.03e-54!5;UBERON:0005388!7.03e-54!5;UBERON:0001802!7.03e-54!5;UBERON:0001781!5.78e-51!3;UBERON:0001782!5.78e-51!3;UBERON:0005424!5.78e-51!3;UBERON:0001301!1.03e-17!1;UBERON:0000019!1.61e-14!19;UBERON:0000047!1.61e-14!19;UBERON:0004088!1.61e-14!19;UBERON:0003072!1.61e-14!19;UBERON:0003071!1.61e-14!19;UBERON:0004128!1.61e-14!19;UBERON:0007625!1.87e-14!11;UBERON:0000970!8.25e-14!20;UBERON:0002104!3.61e-13!21;UBERON:0001456!3.61e-13!21;UBERON:0000020!4.73e-12!23;UBERON:0001032!1.46e-11!24;UBERON:0004456!1.46e-11!24;UBERON:0005085!1.28e-09!29;UBERON:0003135!6.94e-07!11;UBERON:0006947!9.12e-07!3;UBERON:0004054!9.12e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0000966;1.50e-156;5!UBERON:0005388;1.50e-156;5!UBERON:0001802;1.50e-156;5!UBERON:0001781;3.27e-147;3!UBERON:0001782;3.27e-147;3!UBERON:0000019;3.83e-42;19!UBERON:0000047;3.83e-42;19!UBERON:0004088;3.83e-42;19!UBERON:0010230;3.83e-42;19!UBERON:0007625;4.07e-41;11!UBERON:0000970;4.28e-40;20!UBERON:0002104;3.06e-38;21!UBERON:0001456;3.06e-38;21!UBERON:0000020;5.16e-35;23!UBERON:0001032;1.33e-33;24!UBERON:0004456;1.33e-33;24!UBERON:0000033;9.32e-16;50!UBERON:0010371;3.77e-14;31!UBERON:0001444;5.77e-14;48!UBERON:0007811;1.35e-09;52!UBERON:0000153;1.97e-09;54 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001782,3.27e-147,3;UBERON:0005424,3.27e-147,3;UBERON:0000966,1.07e-130,6;UBERON:0005388,1.07e-130,6;UBERON:0001802,1.07e-130,6;UBERON:0001781,8.91e-111,4;UBERON:0007625,4.07e-41,11;UBERON:0000019,4.28e-40,20;UBERON:0000047,4.28e-40,20;UBERON:0010312,4.28e-40,20;UBERON:0004088,4.28e-40,20;UBERON:0010230,4.28e-40,20;UBERON:0003072,4.28e-40,20;UBERON:0004128,4.28e-40,20;UBERON:0003071,4.28e-40,20;UBERON:0000970,3.06e-38,21;UBERON:0002104,3.06e-38,21;UBERON:0001456,1.49e-36,22;UBERON:0000020,1.33e-33,24;UBERON:0001032,1.33e-33,24;UBERON:0004456,1.33e-33,24;UBERON:0005085,2.93e-26,31;UBERON:0001444,5.55e-17,49;UBERON:0000033,5.62e-15,56;UBERON:0000153,1.29e-13,62;UBERON:0007811,1.29e-13,62;UBERON:0003056,1.29e-13,61;UBERON:0003075,2.17e-10,82;UBERON:0007284,2.17e-10,82;UBERON:0002346,5.98e-10,86;UBERON:0010371,2.22e-08,104;UBERON:0004923,1.18e-07,66;UBERON:0010314,8.99e-07,132 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.904318131178758,0,0.699810938274399,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.0789563809358,31.4894059871718,96.3120048206337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.07281978112303,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p2@SERPINE3 | |||
}} |
Revision as of 02:35, 11 September 2013
Short description: | p2@SERPINE3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_SERPINE3_5end |
Coexpression cluster: | C753_Retinal_retina_eye_kidney_caudate_corpus_putamen |
Association with transcript: | -8bp_to_ENST00000419898_5end |
EntrezGene: | SERPINE3 |
HGNC: | 24774 |
UniProt: | E5RG55 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
retinal pigment epithelial cell | 3.27e-147 | 3 |
visual pigment cell | 8.91e-111 | 4 |
pigment cell | 1.46e-32 | 14 |
Ontology term | p-value | n |
---|---|---|
pigmented layer of retina | 3.27e-147 | 3 |
presumptive retinal pigmented epithelium | 3.27e-147 | 3 |
retina | 1.07e-130 | 6 |
photoreceptor array | 1.07e-130 | 6 |
posterior segment of eyeball | 1.07e-130 | 6 |
layer of retina | 8.91e-111 | 4 |
pigment epithelium of eye | 4.07e-41 | 11 |
camera-type eye | 4.28e-40 | 20 |
simple eye | 4.28e-40 | 20 |
immature eye | 4.28e-40 | 20 |
ocular region | 4.28e-40 | 20 |
eyeball of camera-type eye | 4.28e-40 | 20 |
optic cup | 4.28e-40 | 20 |
optic vesicle | 4.28e-40 | 20 |
eye primordium | 4.28e-40 | 20 |
eye | 3.06e-38 | 21 |
visual system | 3.06e-38 | 21 |
face | 1.49e-36 | 22 |
sense organ | 1.33e-33 | 24 |
sensory system | 1.33e-33 | 24 |
entire sense organ system | 1.33e-33 | 24 |
ectodermal placode | 2.93e-26 | 31 |
subdivision of head | 5.55e-17 | 49 |
head | 5.62e-15 | 56 |
anterior region of body | 1.29e-13 | 62 |
craniocervical region | 1.29e-13 | 62 |
pre-chordal neural plate | 1.29e-13 | 61 |
neural plate | 2.17e-10 | 82 |
presumptive neural plate | 2.17e-10 | 82 |
neurectoderm | 5.98e-10 | 86 |
ecto-epithelium | 2.22e-08 | 104 |
organ component layer | 1.18e-07 | 66 |
structure with developmental contribution from neural crest | 8.99e-07 | 132 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.