FFCP PHASE1:Hg19::chr12:80837949..80837979,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9679|TSSclassifier=S|UniProt=|association_with_transcript=1bp_to_ENST00000526956_5end|coexpression_cluster_id=C38|description=CAGE_peak_4_at_PTPRQ_5end|id=chr12:80837949..80837979,+|ontology_enrichment_celltype=CL:0002541!2.44e-11!3|ontology_enrichment_celltype_v019=CL:0002541;5.99e-34;3!CL:0000222;5.23e-26;1!CL:0002097;7.30e-14;2!CL:0000174;1.10e-09;3|ontology_enrichment_celltype_v019_2=CL:0002541,6.51e-34,3;CL:0002097,7.30e-14,2;CL:0000174,1.10e-09,3|ontology_enrichment_development_v019=UBERON:0010122;1.37e-13;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3371;2.16e-26;1!DOID:4549;2.16e-26;1!DOID:5861;2.16e-26;1!DOID:6496;2.16e-26;1|ontology_enrichment_disease_v019_2=DOID:3371,2.16e-26,1;DOID:4549,2.16e-26,1;DOID:5861,2.16e-26,1;DOID:6496,2.16e-26,1|ontology_enrichment_uberon=UBERON:0000476!2.44e-11!3;UBERON:0000920!2.44e-11!3;UBERON:0000369!7.32e-09!4;UBERON:0002435!7.32e-09!4;UBERON:0000204!7.32e-09!4;UBERON:0010082!7.32e-09!4;UBERON:0005631!1.16e-08!14;UBERON:0000158!1.16e-08!14;UBERON:0000341!2.12e-08!2;UBERON:0003124!2.22e-08!7|ontology_enrichment_uberon_v019=UBERON:0003124;5.99e-34;3!UBERON:0000920;5.99e-34;3!UBERON:0005383;1.77e-33;3!UBERON:0005382;1.77e-33;3!UBERON:0001874;9.79e-26;1!UBERON:0000369;2.08e-25;4!UBERON:0002435;2.08e-25;4!UBERON:0000204;2.08e-25;4!UBERON:0009663;5.41e-15;7!UBERON:0001873;1.37e-13;2!UBERON:0002420;6.88e-12;9!UBERON:0000125;6.88e-12;9!UBERON:0007245;6.88e-12;9!UBERON:0002308;6.88e-12;9!UBERON:0010009;6.88e-12;9!UBERON:0010011;6.88e-12;9!UBERON:0000454;6.88e-12;9!UBERON:0005631;6.13e-11;10!UBERON:0000158;6.13e-11;10!UBERON:0002418;1.01e-09;3!UBERON:0004755;1.01e-09;3!UBERON:0002369;1.10e-09;3!UBERON:0001235;1.10e-09;3!UBERON:0006858;1.10e-09;3|ontology_enrichment_uberon_v019_2=UBERON:0000920,6.51e-34,3;UBERON:0005383,1.50e-33,3;UBERON:0005382,1.50e-33,3;UBERON:0001874,7.62e-26,1;UBERON:0000369,1.84e-25,4;UBERON:0002435,1.84e-25,4;UBERON:0000204,1.84e-25,4;UBERON:0010082,1.84e-25,4;UBERON:0003124,3.53e-15,7;UBERON:0009663,5.04e-15,7;UBERON:0001873,1.37e-13,2;UBERON:0010122,1.37e-13,2;UBERON:0002420,6.51e-12,9;UBERON:0000125,6.51e-12,9;UBERON:0007245,6.51e-12,9;UBERON:0002308,6.51e-12,9;UBERON:0010009,6.51e-12,9;UBERON:0010011,6.51e-12,9;UBERON:0000454,6.51e-12,9;UBERON:0002418,1.01e-09,3;UBERON:0004755,1.01e-09,3;UBERON:0002369,1.10e-09,3;UBERON:0001235,1.10e-09,3;UBERON:0006858,1.10e-09,3;UBERON:0005631,4.49e-08,14;UBERON:0000158,4.49e-08,14|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0.18611685633159,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0.110293972732394,0.217879444092406,0,0.134831308160164,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0.410952645100767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0.157702415033935,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0,0,0,0,0,0.464845549297286,0.31481234683064,0,0,0,0,0,0,0,0,0.571890581771475,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0.121360521749513,0,0,0.71623345421307,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68835014075571,0,0,0,0,0.21787692703798,0,0,0,0,0,0,3.50901275705111,0.0915975934018623,2.13213910407454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.4448221710125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393709926058995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0.306345576763462,0.327872630709804,0,0,0,0,0,0,0,0,0.249960815924213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,2.52369796457302,0,5.57548137574807,0,1.13352962756136,0,0,0,0,0.219284049578707,0.353378291891762,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.527613733078862,0,0,0,0,0,0.443511850813194,0,0,0,0,0,0,0.078493092850514,1.88538707899202,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.237840181555137,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0.426467963801962,0.714193294391221,0,0,0,0.25458863311266,0.202117188958219,0,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0|short_description=p4@PTPRQ}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene= | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9679 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=1bp_to_ENST00000526956_5end | |||
|coexpression_cluster_id=C38 | |||
|description=CAGE_peak_4_at_PTPRQ_5end | |||
|id=chr12:80837949..80837979,+ | |||
|ontology_enrichment_celltype=CL:0002541!2.44e-11!3 | |||
|ontology_enrichment_celltype_v019=CL:0002541;5.99e-34;3!CL:0000222;5.23e-26;1!CL:0002097;7.30e-14;2!CL:0000174;1.10e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,6.51e-34,3;CL:0002097,7.30e-14,2;CL:0000174,1.10e-09,3 | |||
|ontology_enrichment_development_v019=UBERON:0010122;1.37e-13;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3371;2.16e-26;1!DOID:4549;2.16e-26;1!DOID:5861;2.16e-26;1!DOID:6496;2.16e-26;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3371,2.16e-26,1;DOID:4549,2.16e-26,1;DOID:5861,2.16e-26,1;DOID:6496,2.16e-26,1 | |||
|ontology_enrichment_uberon=UBERON:0000476!2.44e-11!3;UBERON:0000920!2.44e-11!3;UBERON:0000369!7.32e-09!4;UBERON:0002435!7.32e-09!4;UBERON:0000204!7.32e-09!4;UBERON:0010082!7.32e-09!4;UBERON:0005631!1.16e-08!14;UBERON:0000158!1.16e-08!14;UBERON:0000341!2.12e-08!2;UBERON:0003124!2.22e-08!7 | |||
|ontology_enrichment_uberon_v019=UBERON:0003124;5.99e-34;3!UBERON:0000920;5.99e-34;3!UBERON:0005383;1.77e-33;3!UBERON:0005382;1.77e-33;3!UBERON:0001874;9.79e-26;1!UBERON:0000369;2.08e-25;4!UBERON:0002435;2.08e-25;4!UBERON:0000204;2.08e-25;4!UBERON:0009663;5.41e-15;7!UBERON:0001873;1.37e-13;2!UBERON:0002420;6.88e-12;9!UBERON:0000125;6.88e-12;9!UBERON:0007245;6.88e-12;9!UBERON:0002308;6.88e-12;9!UBERON:0010009;6.88e-12;9!UBERON:0010011;6.88e-12;9!UBERON:0000454;6.88e-12;9!UBERON:0005631;6.13e-11;10!UBERON:0000158;6.13e-11;10!UBERON:0002418;1.01e-09;3!UBERON:0004755;1.01e-09;3!UBERON:0002369;1.10e-09;3!UBERON:0001235;1.10e-09;3!UBERON:0006858;1.10e-09;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000920,6.51e-34,3;UBERON:0005383,1.50e-33,3;UBERON:0005382,1.50e-33,3;UBERON:0001874,7.62e-26,1;UBERON:0000369,1.84e-25,4;UBERON:0002435,1.84e-25,4;UBERON:0000204,1.84e-25,4;UBERON:0010082,1.84e-25,4;UBERON:0003124,3.53e-15,7;UBERON:0009663,5.04e-15,7;UBERON:0001873,1.37e-13,2;UBERON:0010122,1.37e-13,2;UBERON:0002420,6.51e-12,9;UBERON:0000125,6.51e-12,9;UBERON:0007245,6.51e-12,9;UBERON:0002308,6.51e-12,9;UBERON:0010009,6.51e-12,9;UBERON:0010011,6.51e-12,9;UBERON:0000454,6.51e-12,9;UBERON:0002418,1.01e-09,3;UBERON:0004755,1.01e-09,3;UBERON:0002369,1.10e-09,3;UBERON:0001235,1.10e-09,3;UBERON:0006858,1.10e-09,3;UBERON:0005631,4.49e-08,14;UBERON:0000158,4.49e-08,14 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257640540045629,0.18611685633159,0,0,0,0,0.161646056818812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0.110293972732394,0.217879444092406,0,0.134831308160164,0,0,0,0,0.4115740113314,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.301439377059586,0,0,0,0,0,0,0,0,0,0.410952645100767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207970861530807,0,0.157702415033935,0.117141414992713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0.107420244868274,0,0,0,0,0,0,0,0.464845549297286,0.31481234683064,0,0,0,0,0,0,0,0,0.571890581771475,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0.121360521749513,0,0,0.71623345421307,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68835014075571,0,0,0,0,0.21787692703798,0,0,0,0,0,0,3.50901275705111,0.0915975934018623,2.13213910407454,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394584402849391,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.4448221710125,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393709926058995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.414239055347196,0,0,0,0,0,0,0.306345576763462,0.327872630709804,0,0,0,0,0,0,0,0,0.249960815924213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0,0,2.52369796457302,0,5.57548137574807,0,1.13352962756136,0,0,0,0,0.219284049578707,0.353378291891762,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.256916900385838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.527613733078862,0,0,0,0,0,0.443511850813194,0,0,0,0,0,0,0.078493092850514,1.88538707899202,0,0,0.215927591218621,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.237840181555137,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103432995861895,0.426467963801962,0.714193294391221,0,0,0,0.25458863311266,0.202117188958219,0,0,0,0,0,0,0.106727345877715,0,0,0,0,0,0,0,0 | |||
|short_description=p4@PTPRQ | |||
}} |
Revision as of 00:38, 11 September 2013
Short description: | p4@PTPRQ |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_PTPRQ_5end |
Coexpression cluster: | C38_extraskeletal_rhabdomyosarcoma_adrenal_rectal_mesothelioma_lung_Wilms |
Association with transcript: | 1bp_to_ENST00000526956_5end |
EntrezGene: | NA |
HGNC: | 9679 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 6.51e-34 | 3 |
cortical cell of adrenal gland | 7.30e-14 | 2 |
steroid hormone secreting cell | 1.10e-09 | 3 |
Ontology term | p-value | n |
---|---|---|
egg chorion | 6.51e-34 | 3 |
caudate-putamen | 1.50e-33 | 3 |
dorsal striatum | 1.50e-33 | 3 |
putamen | 7.62e-26 | 1 |
corpus striatum | 1.84e-25 | 4 |
striatum | 1.84e-25 | 4 |
ventral part of telencephalon | 1.84e-25 | 4 |
future corpus striatum | 1.84e-25 | 4 |
chorion | 3.53e-15 | 7 |
telencephalic nucleus | 5.04e-15 | 7 |
caudate nucleus | 1.37e-13 | 2 |
future caudate nucleus | 1.37e-13 | 2 |
basal ganglion | 6.51e-12 | 9 |
neural nucleus | 6.51e-12 | 9 |
nuclear complex of neuraxis | 6.51e-12 | 9 |
nucleus of brain | 6.51e-12 | 9 |
aggregate regional part of brain | 6.51e-12 | 9 |
collection of basal ganglia | 6.51e-12 | 9 |
cerebral subcortex | 6.51e-12 | 9 |
cartilage tissue | 1.01e-09 | 3 |
skeletal tissue | 1.01e-09 | 3 |
adrenal gland | 1.10e-09 | 3 |
adrenal cortex | 1.10e-09 | 3 |
adrenal/interrenal gland | 1.10e-09 | 3 |
extraembryonic membrane | 4.49e-08 | 14 |
membranous layer | 4.49e-08 | 14 |
Ontology term | p-value | n |
---|---|---|
chondrosarcoma | 2.16e-26 | 1 |
extraosseous chondrosarcoma | 2.16e-26 | 1 |
myxoid chondrosarcoma | 2.16e-26 | 1 |
extraskeletal myxoid chondrosarcoma | 2.16e-26 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.