FFCP PHASE1:Hg19::chr12:71148228..71148248,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=5801|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=9680|TSSclassifier=S|UniProt=Q15256|association_with_transcript=116bp_to_uc001swh.1_5end|coexpression_cluster_id=C1684|description=CAGE_peak_6_at_PTPRR_5end|id=chr12:71148228..71148248,-|ontology_enrichment_celltype=CL:0002541!2.46e-08!3|ontology_enrichment_celltype_v019=CL:0002541;6.02e-16;3!CL:0000319;1.86e-12;1!CL:1000415;5.11e-07;2!CL:0000159;7.40e-07;2|ontology_enrichment_celltype_v019_2=CL:0002541,6.26e-16,3;CL:0000319,1.75e-12,1;CL:1000415,5.11e-07,2;CL:0000159,7.20e-07,2|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:3030;1.86e-12;1!DOID:1749;1.48e-07;14|ontology_enrichment_disease_v019_2=DOID:3030,1.75e-12,1;DOID:1749,1.46e-07,14|ontology_enrichment_uberon=UBERON:0002780!3.29e-32!41;UBERON:0001890!3.29e-32!41;UBERON:0006240!3.29e-32!41;UBERON:0003080!2.87e-31!42;UBERON:0001049!5.49e-31!57;UBERON:0005068!5.49e-31!57;UBERON:0006241!5.49e-31!57;UBERON:0007135!5.49e-31!57;UBERON:0002619!3.14e-28!22;UBERON:0001893!3.98e-28!34;UBERON:0001869!1.22e-27!32;UBERON:0002616!1.57e-27!59;UBERON:0002791!1.94e-26!33;UBERON:0002020!1.70e-25!34;UBERON:0003528!1.70e-25!34;UBERON:0000956!2.33e-24!25;UBERON:0000203!2.33e-24!25;UBERON:0001950!2.96e-24!20;UBERON:0007023!3.82e-24!115;UBERON:0000955!1.57e-23!69;UBERON:0006238!1.57e-23!69;UBERON:0001017!1.86e-21!82;UBERON:0005743!2.02e-21!86;UBERON:0003056!7.96e-21!61;UBERON:0002346!2.43e-20!90;UBERON:0003075!2.59e-20!86;UBERON:0007284!2.59e-20!86;UBERON:0000073!9.19e-20!94;UBERON:0001016!9.19e-20!94;UBERON:0000349!9.72e-12!5;UBERON:0000033!2.73e-11!123;UBERON:0000153!2.24e-10!129;UBERON:0007811!2.24e-10!129;UBERON:0001871!1.01e-09!7;UBERON:0000200!2.67e-09!6;UBERON:0000924!1.10e-08!173;UBERON:0006601!1.10e-08!173;UBERON:0004121!1.89e-08!169;UBERON:0000476!2.46e-08!3;UBERON:0000920!2.46e-08!3;UBERON:0000064!3.43e-08!219;UBERON:0002420!4.70e-08!9;UBERON:0007245!4.70e-08!9;UBERON:0010009!4.70e-08!9;UBERON:0010011!4.70e-08!9;UBERON:0000454!4.70e-08!9;UBERON:0001872!7.71e-08!5;UBERON:0002021!8.58e-08!5;UBERON:0002771!2.89e-07!3;UBERON:0000062!9.96e-07!511|ontology_enrichment_uberon_v019=UBERON:0001905;1.99e-23;2!UBERON:0002757;1.99e-23;2!UBERON:0010134;1.99e-23;2!UBERON:0005408;1.99e-23;2!UBERON:0001899;1.99e-23;2!UBERON:0003124;6.02e-16;3!UBERON:0000920;6.02e-16;3!UBERON:0000160;2.74e-15;17!UBERON:0006834;3.26e-12;1!UBERON:0003296;3.27e-12;4!UBERON:0010133;3.27e-12;4!UBERON:0002784;3.27e-12;4!UBERON:0005409;5.93e-12;22!UBERON:0002108;1.21e-09;4!UBERON:0001894;2.37e-07;7!UBERON:0004921;7.31e-07;33|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.99e-23,2;UBERON:0002757,1.99e-23,2;UBERON:0010134,1.99e-23,2;UBERON:0005408,1.99e-23,2;UBERON:0001899,1.99e-23,2;UBERON:0000920,6.26e-16,3;UBERON:0000160,2.47e-15,17;UBERON:0003296,3.27e-12,4;UBERON:0010133,3.27e-12,4;UBERON:0002784,3.27e-12,4;UBERON:0006834,3.45e-12,1;UBERON:0005409,1.35e-10,25;UBERON:0002108,1.16e-09,4;UBERON:0001894,2.37e-07,7;UBERON:0006222,2.37e-07,7;UBERON:0003124,2.45e-07,7|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35287282397425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.362578348774867,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00299045849731,0,0.47748896947538,0,0,0.994147647766298,0.281338832821026,0,0,0,0,0.828851746593443,0,0,0,0,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0.278304294485554,0,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0.442317039724898,0.295547618953547,0.438770794307945,0,0,0.230850775511391,0,0,0,0,2.23300811812344,0.641183153813036,7.46248686426089,0,0.156980256395025,0,0.225595660617181,0,0,0.569261198172555,0.158936578980379,0.843992258112108,0.163232808159148,0.282706142867882,0,0,0.265372693510018,4.27721101453538,0,0,0,0,0,0.468528891450678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0979923974143777,0,0.17472666824203,0,0.0967563312890851,0.146178634172371,0.0821154570532092,0,0,0.225980740780532,0,0,0.379864775735272,10.5597746676794,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=5801 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9680 | |||
|TSSclassifier=S | |||
|UniProt=Q15256 | |||
|association_with_transcript=116bp_to_uc001swh.1_5end | |||
|coexpression_cluster_id=C1684 | |||
|description=CAGE_peak_6_at_PTPRR_5end | |||
|id=chr12:71148228..71148248,- | |||
|ontology_enrichment_celltype=CL:0002541!2.46e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0002541;6.02e-16;3!CL:0000319;1.86e-12;1!CL:1000415;5.11e-07;2!CL:0000159;7.40e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002541,6.26e-16,3;CL:0000319,1.75e-12,1;CL:1000415,5.11e-07,2;CL:0000159,7.20e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3030;1.86e-12;1!DOID:1749;1.48e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:3030,1.75e-12,1;DOID:1749,1.46e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0002780!3.29e-32!41;UBERON:0001890!3.29e-32!41;UBERON:0006240!3.29e-32!41;UBERON:0003080!2.87e-31!42;UBERON:0001049!5.49e-31!57;UBERON:0005068!5.49e-31!57;UBERON:0006241!5.49e-31!57;UBERON:0007135!5.49e-31!57;UBERON:0002619!3.14e-28!22;UBERON:0001893!3.98e-28!34;UBERON:0001869!1.22e-27!32;UBERON:0002616!1.57e-27!59;UBERON:0002791!1.94e-26!33;UBERON:0002020!1.70e-25!34;UBERON:0003528!1.70e-25!34;UBERON:0000956!2.33e-24!25;UBERON:0000203!2.33e-24!25;UBERON:0001950!2.96e-24!20;UBERON:0007023!3.82e-24!115;UBERON:0000955!1.57e-23!69;UBERON:0006238!1.57e-23!69;UBERON:0001017!1.86e-21!82;UBERON:0005743!2.02e-21!86;UBERON:0003056!7.96e-21!61;UBERON:0002346!2.43e-20!90;UBERON:0003075!2.59e-20!86;UBERON:0007284!2.59e-20!86;UBERON:0000073!9.19e-20!94;UBERON:0001016!9.19e-20!94;UBERON:0000349!9.72e-12!5;UBERON:0000033!2.73e-11!123;UBERON:0000153!2.24e-10!129;UBERON:0007811!2.24e-10!129;UBERON:0001871!1.01e-09!7;UBERON:0000200!2.67e-09!6;UBERON:0000924!1.10e-08!173;UBERON:0006601!1.10e-08!173;UBERON:0004121!1.89e-08!169;UBERON:0000476!2.46e-08!3;UBERON:0000920!2.46e-08!3;UBERON:0000064!3.43e-08!219;UBERON:0002420!4.70e-08!9;UBERON:0007245!4.70e-08!9;UBERON:0010009!4.70e-08!9;UBERON:0010011!4.70e-08!9;UBERON:0000454!4.70e-08!9;UBERON:0001872!7.71e-08!5;UBERON:0002021!8.58e-08!5;UBERON:0002771!2.89e-07!3;UBERON:0000062!9.96e-07!511 | |||
|ontology_enrichment_uberon_v019=UBERON:0001905;1.99e-23;2!UBERON:0002757;1.99e-23;2!UBERON:0010134;1.99e-23;2!UBERON:0005408;1.99e-23;2!UBERON:0001899;1.99e-23;2!UBERON:0003124;6.02e-16;3!UBERON:0000920;6.02e-16;3!UBERON:0000160;2.74e-15;17!UBERON:0006834;3.26e-12;1!UBERON:0003296;3.27e-12;4!UBERON:0010133;3.27e-12;4!UBERON:0002784;3.27e-12;4!UBERON:0005409;5.93e-12;22!UBERON:0002108;1.21e-09;4!UBERON:0001894;2.37e-07;7!UBERON:0004921;7.31e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001905,1.99e-23,2;UBERON:0002757,1.99e-23,2;UBERON:0010134,1.99e-23,2;UBERON:0005408,1.99e-23,2;UBERON:0001899,1.99e-23,2;UBERON:0000920,6.26e-16,3;UBERON:0000160,2.47e-15,17;UBERON:0003296,3.27e-12,4;UBERON:0010133,3.27e-12,4;UBERON:0002784,3.27e-12,4;UBERON:0006834,3.45e-12,1;UBERON:0005409,1.35e-10,25;UBERON:0002108,1.16e-09,4;UBERON:0001894,2.37e-07,7;UBERON:0006222,2.37e-07,7;UBERON:0003124,2.45e-07,7 | |||
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|short_description=p6@PTPRR | |||
}} |
Revision as of 00:19, 11 September 2013
Short description: | p6@PTPRR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_PTPRR_5end |
Coexpression cluster: | C1684_serous_gall_rectal_colon_chorionic_adult_non |
Association with transcript: | 116bp_to_uc001swh.1_5end |
EntrezGene: | PTPRR |
HGNC: | 9680 |
UniProt: | Q15256 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
chorionic membrane mesenchymal stem cell | 6.26e-16 | 3 |
mucus secreting cell | 1.75e-12 | 1 |
epithelial cell of gall bladder | 5.11e-07 | 2 |
seromucus secreting cell | 7.20e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
pineal body | 1.99e-23 | 2 |
regional part of epithalamus | 1.99e-23 | 2 |
secretory circumventricular organ | 1.99e-23 | 2 |
circumventricular organ | 1.99e-23 | 2 |
epithalamus | 1.99e-23 | 2 |
egg chorion | 6.26e-16 | 3 |
intestine | 2.47e-15 | 17 |
gland of diencephalon | 3.27e-12 | 4 |
neuroendocrine gland | 3.27e-12 | 4 |
regional part of diencephalon | 3.27e-12 | 4 |
uterus or analog | 3.45e-12 | 1 |
gastrointestinal system | 1.35e-10 | 25 |
small intestine | 1.16e-09 | 4 |
diencephalon | 2.37e-07 | 7 |
future diencephalon | 2.37e-07 | 7 |
chorion | 2.45e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 1.75e-12 | 1 |
squamous cell carcinoma | 1.46e-07 | 14 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.