FFCP PHASE1:Hg19::chr12:6484306..6484392,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=4055|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=6718|TSSclassifier=S|UniProt=|association_with_transcript=0bp_to_ENST00000542830_5end|coexpression_cluster_id=C3316|description=CAGE_peak_4_at_LTBR_5end|id=chr12:6484306..6484392,+|ontology_enrichment_celltype=CL:0000066!9.49e-16!254;CL:0002076!7.62e-11!43;CL:0000223!1.56e-10!59|ontology_enrichment_celltype_v019=CL:0002076;1.60e-07;42!CL:1000507;3.66e-07;10!CL:1000494;3.66e-07;10|ontology_enrichment_celltype_v019_2=CL:0000066,1.14e-13,253;CL:0002076,1.02e-09,42;CL:0000223,2.28e-08,58;CL:1000507,4.54e-07,10;CL:1000494,4.54e-07,10|ontology_enrichment_development_v019=|ontology_enrichment_disease=DOID:305!5.08e-10!106;DOID:0050687!7.67e-07!143|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=DOID:305,8.51e-09,106|ontology_enrichment_uberon=UBERON:0004119!6.56e-20!169;UBERON:0000925!6.56e-20!169;UBERON:0006595!6.56e-20!169;UBERON:0004921!1.35e-16!129;UBERON:0004185!1.35e-16!129;UBERON:0000464!2.88e-15!104;UBERON:0000466!4.52e-15!126;UBERON:0001007!4.76e-15!155;UBERON:0001555!4.76e-15!155;UBERON:0007026!4.76e-15!155;UBERON:0005177!2.28e-14!107;UBERON:0000077!5.37e-14!130;UBERON:0000481!4.02e-11!347;UBERON:0001041!3.17e-10!98;UBERON:0003104!1.77e-09!238;UBERON:0009142!1.77e-09!238;UBERON:0001008!5.75e-09!45;UBERON:0005911!5.84e-09!82;UBERON:0005178!7.49e-09!34;UBERON:0002224!7.49e-09!34;UBERON:0006554!1.22e-08!44;UBERON:0000160!2.08e-08!27;UBERON:0005181!2.48e-08!35;UBERON:0005153!3.45e-08!37;UBERON:0000922!5.39e-08!612;UBERON:0009569!5.74e-08!113;UBERON:0002553!6.23e-08!70;UBERON:0001048!7.32e-08!168;UBERON:0001004!1.12e-07!72;UBERON:0002048!1.27e-07!22;UBERON:0000117!1.27e-07!22;UBERON:0000171!1.27e-07!22;UBERON:0000170!1.27e-07!22;UBERON:0005597!1.27e-07!22;UBERON:0000118!1.27e-07!22;UBERON:0000062!1.94e-07!511;UBERON:0005409!2.07e-07!35;UBERON:0000063!2.33e-07!97;UBERON:0003135!2.99e-07!11;UBERON:0000468!5.56e-07!659;UBERON:0000065!8.58e-07!53|ontology_enrichment_uberon_v019=UBERON:0006554;1.18e-10;30!UBERON:0001008;1.18e-10;30!UBERON:0003135;3.25e-10;11!UBERON:0005178;1.83e-09;34!UBERON:0002224;1.83e-09;34!UBERON:0003101;4.97e-09;22!UBERON:0000079;4.97e-09;22!UBERON:0004921;2.39e-08;33!UBERON:0001041;3.47e-08;14!UBERON:0005181;6.61e-08;35!UBERON:0002048;3.64e-07;22!UBERON:0000117;3.64e-07;22!UBERON:0000171;3.64e-07;22!UBERON:0000170;3.64e-07;22!UBERON:0004211;3.66e-07;10!UBERON:0009773;3.66e-07;10!UBERON:0001231;3.66e-07;10!UBERON:0004810;3.66e-07;10!UBERON:0000473;6.87e-07;8!UBERON:0002113;7.32e-07;24!UBERON:0011143;7.32e-07;24!UBERON:0000489;7.54e-07;29|ontology_enrichment_uberon_v019_2=UBERON:0001008,2.63e-15,48;UBERON:0005177,3.05e-15,101;UBERON:0004119,3.36e-15,160;UBERON:0000925,3.36e-15,160;UBERON:0006595,3.36e-15,160;UBERON:0006554,8.35e-15,47;UBERON:0004921,1.23e-12,118;UBERON:0001007,1.17e-10,145;UBERON:0001555,1.17e-10,145;UBERON:0007026,1.17e-10,145;UBERON:0003135,2.74e-10,11;UBERON:0005178,3.16e-10,34;UBERON:0002224,3.16e-10,34;UBERON:0005181,9.42e-10,35;UBERON:0005153,3.70e-09,37;UBERON:0003101,4.61e-09,22;UBERON:0000079,4.61e-09,22;UBERON:0001041,1.01e-08,87;UBERON:0002113,1.79e-08,26;UBERON:0003918,1.79e-08,26;UBERON:0011143,1.79e-08,26;UBERON:0005095,1.79e-08,26;UBERON:0007687,1.79e-08,26;UBERON:0000489,2.24e-08,31;UBERON:0005911,4.23e-08,82;UBERON:0002553,5.89e-08,61;UBERON:0009569,7.66e-08,112;UBERON:0005156,1.77e-07,59;UBERON:0000990,1.77e-07,59;UBERON:0002048,3.03e-07,22;UBERON:0000117,3.03e-07,22;UBERON:0000171,3.03e-07,22;UBERON:0000170,3.03e-07,22;UBERON:0005597,3.03e-07,22;UBERON:0000118,3.03e-07,22;UBERON:0001004,4.52e-07,74;UBERON:0004810,4.54e-07,10;UBERON:0000473,5.65e-07,8|phase1_expression=0.181678379270557,0.214100523890983,0,0,0.893922188854576,0.872338524100369,0,0,0,1.47440361900905,3.48900583986214,18.1306338868043,25.3216299099315,3.21792517696121,9.27912652038164,0,0,0,0,0.861847406537515,1.83600622119828,0.626909442956176,0.286235987131057,0.821246550437305,0.125542639594803,0,0,0,0,0,0,2.75826367343678,2.10844143144775,2.58827807116751,0,0,0,0,0,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.31420598941885,1.34140171940727,0.255725123687061,0,0.50133791063589,0.144846518960824,0,0,1.98523116044542,1.10864698731282,1.14185221401064,2.16115474571226,1.09288586487763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0.286836620748814,0,0,0,0,0.933633106199299,0,0,1.36221684880438,0,0,0,0,0,0,0,0,0.204154171254893,0,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0974370051611986,0,0.0920498986422993,0,0,0,0,0,0,0.286804595389004,1.34171076742555,0.397589304964456,1.62671520017326,1.0366105501537,1.26160425437814,2.55484151353081,0,0,0,1.85747171212792,0,0,0,0,0,0,0,0.134831308160164,0.392442930250692,0,0,0,0.411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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=4055 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6718 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENST00000542830_5end | |||
|coexpression_cluster_id=C3316 | |||
|description=CAGE_peak_4_at_LTBR_5end | |||
|id=chr12:6484306..6484392,+ | |||
|ontology_enrichment_celltype=CL:0000066!9.49e-16!254;CL:0002076!7.62e-11!43;CL:0000223!1.56e-10!59 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.60e-07;42!CL:1000507;3.66e-07;10!CL:1000494;3.66e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.14e-13,253;CL:0002076,1.02e-09,42;CL:0000223,2.28e-08,58;CL:1000507,4.54e-07,10;CL:1000494,4.54e-07,10 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!5.08e-10!106;DOID:0050687!7.67e-07!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,8.51e-09,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!6.56e-20!169;UBERON:0000925!6.56e-20!169;UBERON:0006595!6.56e-20!169;UBERON:0004921!1.35e-16!129;UBERON:0004185!1.35e-16!129;UBERON:0000464!2.88e-15!104;UBERON:0000466!4.52e-15!126;UBERON:0001007!4.76e-15!155;UBERON:0001555!4.76e-15!155;UBERON:0007026!4.76e-15!155;UBERON:0005177!2.28e-14!107;UBERON:0000077!5.37e-14!130;UBERON:0000481!4.02e-11!347;UBERON:0001041!3.17e-10!98;UBERON:0003104!1.77e-09!238;UBERON:0009142!1.77e-09!238;UBERON:0001008!5.75e-09!45;UBERON:0005911!5.84e-09!82;UBERON:0005178!7.49e-09!34;UBERON:0002224!7.49e-09!34;UBERON:0006554!1.22e-08!44;UBERON:0000160!2.08e-08!27;UBERON:0005181!2.48e-08!35;UBERON:0005153!3.45e-08!37;UBERON:0000922!5.39e-08!612;UBERON:0009569!5.74e-08!113;UBERON:0002553!6.23e-08!70;UBERON:0001048!7.32e-08!168;UBERON:0001004!1.12e-07!72;UBERON:0002048!1.27e-07!22;UBERON:0000117!1.27e-07!22;UBERON:0000171!1.27e-07!22;UBERON:0000170!1.27e-07!22;UBERON:0005597!1.27e-07!22;UBERON:0000118!1.27e-07!22;UBERON:0000062!1.94e-07!511;UBERON:0005409!2.07e-07!35;UBERON:0000063!2.33e-07!97;UBERON:0003135!2.99e-07!11;UBERON:0000468!5.56e-07!659;UBERON:0000065!8.58e-07!53 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.18e-10;30!UBERON:0001008;1.18e-10;30!UBERON:0003135;3.25e-10;11!UBERON:0005178;1.83e-09;34!UBERON:0002224;1.83e-09;34!UBERON:0003101;4.97e-09;22!UBERON:0000079;4.97e-09;22!UBERON:0004921;2.39e-08;33!UBERON:0001041;3.47e-08;14!UBERON:0005181;6.61e-08;35!UBERON:0002048;3.64e-07;22!UBERON:0000117;3.64e-07;22!UBERON:0000171;3.64e-07;22!UBERON:0000170;3.64e-07;22!UBERON:0004211;3.66e-07;10!UBERON:0009773;3.66e-07;10!UBERON:0001231;3.66e-07;10!UBERON:0004810;3.66e-07;10!UBERON:0000473;6.87e-07;8!UBERON:0002113;7.32e-07;24!UBERON:0011143;7.32e-07;24!UBERON:0000489;7.54e-07;29 | |||
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| |||
|short_description=p4@LTBR | |||
}} |
Revision as of 23:54, 10 September 2013
Short description: | p4@LTBR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_LTBR_5end |
Coexpression cluster: | C3316_Amniotic_seminal_ductal_ductus_lung_tubular_Placental |
Association with transcript: | 0bp_to_ENST00000542830_5end |
EntrezGene: | LTBR |
HGNC: | 6718 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.14e-13 | 253 |
endo-epithelial cell | 1.02e-09 | 42 |
endodermal cell | 2.28e-08 | 58 |
kidney tubule cell | 4.54e-07 | 10 |
nephron tubule epithelial cell | 4.54e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 8.51e-09 | 106 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.