FFCP PHASE1:Hg19::chr12:56324854..56324865,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=1606|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=2849|TSSclassifier=S|UniProt=G3V4I3|association_with_transcript=-7bp_to_ENST00000555090_5end|coexpression_cluster_id=C476|description=CAGE_peak_8_at_DGKA_5end|id=chr12:56324854..56324865,+|ontology_enrichment_celltype=CL:0000084!1.84e-21!25;CL:0000827!1.84e-21!25;CL:0000791!1.11e-19!18;CL:0000789!1.11e-19!18;CL:0002420!1.11e-19!18;CL:0002419!1.11e-19!18;CL:0000790!1.11e-19!18;CL:0000542!6.68e-16!53;CL:0000051!6.68e-16!53;CL:0000838!4.44e-15!52;CL:0002076!3.61e-12!43;CL:0002368!3.69e-12!13;CL:0000624!1.34e-11!6;CL:0000625!1.41e-11!11;CL:0000223!2.35e-07!59;CL:0002202!2.97e-07!9;CL:0002632!2.97e-07!9;CL:0000898!8.64e-07!3;CL:0002087!9.06e-07!119|ontology_enrichment_celltype_v019=CL:0000791;3.41e-29;18!CL:0000789;3.41e-29;18!CL:0002419;3.41e-29;18!CL:0000084;7.92e-29;25!CL:0000624;1.03e-27;6!CL:0000898;9.61e-15;3!CL:0000307;9.61e-15;3!CL:0002202;5.67e-13;9!CL:0002632;5.67e-13;9!CL:0002368;1.16e-12;13!CL:0000815;1.56e-10;2!CL:0000792;1.56e-10;2!CL:0002677;1.56e-10;2!CL:0000625;2.13e-10;11!CL:0002328;2.71e-07;3!CL:0000542;5.82e-07;53!CL:0002076;7.02e-07;42|ontology_enrichment_celltype_v019_2=CL:0000791,3.76e-29,18;CL:0000789,3.76e-29,18;CL:0002420,3.76e-29,18;CL:0002419,3.76e-29,18;CL:0000790,3.76e-29,18;CL:0000084,1.29e-28,25;CL:0000827,1.29e-28,25;CL:0000624,1.20e-27,6;CL:0000898,3.74e-15,3;CL:0000068,1.22e-14,3;CL:0000069,1.22e-14,3;CL:0000307,1.22e-14,3;CL:0000377,1.22e-14,3;CL:0002202,7.53e-13,9;CL:0002632,7.53e-13,9;CL:0002368,1.32e-12,13;CL:0000838,2.51e-12,52;CL:0000542,4.82e-12,53;CL:0000051,4.82e-12,53;CL:0000815,1.01e-10,2;CL:0000792,1.01e-10,2;CL:0002677,1.01e-10,2;CL:0000625,2.14e-10,11;CL:0002076,2.88e-09,42;CL:0002328,3.28e-07,3|ontology_enrichment_development_v019=CL:0000790;3.41e-29;18!CL:0000377;9.61e-15;3!CL:0000051;5.82e-07;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=UBERON:0002370;2.43e-11;2!UBERON:0005058;2.43e-11;2!UBERON:0009113;2.43e-11;2!UBERON:0007196;1.13e-07;15!UBERON:0001558;1.13e-07;15!UBERON:0004815;2.71e-07;3!UBERON:0002031;2.71e-07;3|ontology_enrichment_uberon_v019_2=UBERON:0002370,6.12e-12,4;UBERON:0005058,6.12e-12,4;UBERON:0009113,6.12e-12,4;UBERON:0003295,6.12e-12,4;UBERON:0005562,6.12e-12,4;UBERON:0003351,4.27e-08,6;UBERON:0000974,4.68e-08,10;UBERON:0007196,1.33e-07,15;UBERON:0001558,1.33e-07,15;UBERON:0004815,3.28e-07,3;UBERON:0002031,3.28e-07,3;UBERON:0004177,5.43e-07,7;UBERON:0005057,5.43e-07,7|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0.919421224478927,2.71085326900425,1.10926203050036,0,0,0,0,0.200544447470142,0.217010870715852,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400395987036012,0,0,0,0,0,0,0,0,0,2.16380747125216,1.17903228824749,1.02800749499755,1.5046784585161,1.95553359980154,0.946895611469467,3.89653456815823,0.668462741311041,2.06224135232386,1.32920336750173,1.62482318259009,0.384273959177026,0.780356085359269,3.61763390128087,1.10540007114339,0.579606171470105,2.66915813691709,1.87278579662799,0,0.226618685395132,1.91610246800961,2.40539211837841,1.77113784413652,2.22995790026868,1.95325036156926,0,0.301150238155546,1.4078527226986,1.24930726552346,0.710331756132051,0,0.201606743224732,0.267440195783507,1.15859523106239,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0.728590576585084,1.11235332835329,0,0,0,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.436094052142534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.35282597214308,0.545492241181669,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.97316789473185,0.122988438543114,0,0.768251997860379,0,1.80952150340936,1.75918045801206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0.425325291727159,0.806026704325635,0.290633938513962,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431255149719035,0.385029108839245,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.620304078368662,0.431428401637234,0.533637789017222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20303882181971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0,2.29706215198469,0,0,0,0,0,0,0,0,0,0,0.165284915360978,0.576570202095319,2.93509238737543,0.2023155617111,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34710957815717,1.34060455107157,2.17781969722645,0,0.43050537267123,0,0.886860307073351,0.918893600827838,0.507447609232169,0,0,0.714695326373367,0,0.648473311192717,0,0.79312517629427,0,0,0,0.185803175125719,0.577076851905779,1.06712765022621,0.478278818186467,0,0.191505370132367,0,0,0,0,0,0,0.169291777801603,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.65770349318689,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=1606 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2849 | |||
|TSSclassifier=S | |||
|UniProt=G3V4I3 | |||
|association_with_transcript=-7bp_to_ENST00000555090_5end | |||
|coexpression_cluster_id=C476 | |||
|description=CAGE_peak_8_at_DGKA_5end | |||
|id=chr12:56324854..56324865,+ | |||
|ontology_enrichment_celltype=CL:0000084!1.84e-21!25;CL:0000827!1.84e-21!25;CL:0000791!1.11e-19!18;CL:0000789!1.11e-19!18;CL:0002420!1.11e-19!18;CL:0002419!1.11e-19!18;CL:0000790!1.11e-19!18;CL:0000542!6.68e-16!53;CL:0000051!6.68e-16!53;CL:0000838!4.44e-15!52;CL:0002076!3.61e-12!43;CL:0002368!3.69e-12!13;CL:0000624!1.34e-11!6;CL:0000625!1.41e-11!11;CL:0000223!2.35e-07!59;CL:0002202!2.97e-07!9;CL:0002632!2.97e-07!9;CL:0000898!8.64e-07!3;CL:0002087!9.06e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.41e-29;18!CL:0000789;3.41e-29;18!CL:0002419;3.41e-29;18!CL:0000084;7.92e-29;25!CL:0000624;1.03e-27;6!CL:0000898;9.61e-15;3!CL:0000307;9.61e-15;3!CL:0002202;5.67e-13;9!CL:0002632;5.67e-13;9!CL:0002368;1.16e-12;13!CL:0000815;1.56e-10;2!CL:0000792;1.56e-10;2!CL:0002677;1.56e-10;2!CL:0000625;2.13e-10;11!CL:0002328;2.71e-07;3!CL:0000542;5.82e-07;53!CL:0002076;7.02e-07;42 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,3.76e-29,18;CL:0000789,3.76e-29,18;CL:0002420,3.76e-29,18;CL:0002419,3.76e-29,18;CL:0000790,3.76e-29,18;CL:0000084,1.29e-28,25;CL:0000827,1.29e-28,25;CL:0000624,1.20e-27,6;CL:0000898,3.74e-15,3;CL:0000068,1.22e-14,3;CL:0000069,1.22e-14,3;CL:0000307,1.22e-14,3;CL:0000377,1.22e-14,3;CL:0002202,7.53e-13,9;CL:0002632,7.53e-13,9;CL:0002368,1.32e-12,13;CL:0000838,2.51e-12,52;CL:0000542,4.82e-12,53;CL:0000051,4.82e-12,53;CL:0000815,1.01e-10,2;CL:0000792,1.01e-10,2;CL:0002677,1.01e-10,2;CL:0000625,2.14e-10,11;CL:0002076,2.88e-09,42;CL:0002328,3.28e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000790;3.41e-29;18!CL:0000377;9.61e-15;3!CL:0000051;5.82e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0002370;2.43e-11;2!UBERON:0005058;2.43e-11;2!UBERON:0009113;2.43e-11;2!UBERON:0007196;1.13e-07;15!UBERON:0001558;1.13e-07;15!UBERON:0004815;2.71e-07;3!UBERON:0002031;2.71e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002370,6.12e-12,4;UBERON:0005058,6.12e-12,4;UBERON:0009113,6.12e-12,4;UBERON:0003295,6.12e-12,4;UBERON:0005562,6.12e-12,4;UBERON:0003351,4.27e-08,6;UBERON:0000974,4.68e-08,10;UBERON:0007196,1.33e-07,15;UBERON:0001558,1.33e-07,15;UBERON:0004815,3.28e-07,3;UBERON:0002031,3.28e-07,3;UBERON:0004177,5.43e-07,7;UBERON:0005057,5.43e-07,7 | |||
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|short_description=p8@DGKA | |||
}} |
Revision as of 23:29, 10 September 2013
Short description: | p8@DGKA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_DGKA_5end |
Coexpression cluster: | C476_thymus_acute_Hodgkin_CD4_CD8_chronic_vein |
Association with transcript: | -7bp_to_ENST00000555090_5end |
EntrezGene: | DGKA |
HGNC: | 2849 |
UniProt: | G3V4I3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 3.76e-29 | 18 |
alpha-beta T cell | 3.76e-29 | 18 |
immature T cell | 3.76e-29 | 18 |
mature T cell | 3.76e-29 | 18 |
immature alpha-beta T cell | 3.76e-29 | 18 |
T cell | 1.29e-28 | 25 |
pro-T cell | 1.29e-28 | 25 |
CD4-positive, alpha-beta T cell | 1.20e-27 | 6 |
naive T cell | 3.74e-15 | 3 |
duct epithelial cell | 1.22e-14 | 3 |
branched duct epithelial cell | 1.22e-14 | 3 |
tracheal epithelial cell | 1.22e-14 | 3 |
tracheoblast | 1.22e-14 | 3 |
epithelial cell of tracheobronchial tree | 7.53e-13 | 9 |
epithelial cell of lower respiratory tract | 7.53e-13 | 9 |
respiratory epithelial cell | 1.32e-12 | 13 |
lymphoid lineage restricted progenitor cell | 2.51e-12 | 52 |
lymphocyte | 4.82e-12 | 53 |
common lymphoid progenitor | 4.82e-12 | 53 |
regulatory T cell | 1.01e-10 | 2 |
CD4-positive, CD25-positive, alpha-beta regulatory T cell | 1.01e-10 | 2 |
naive regulatory T cell | 1.01e-10 | 2 |
CD8-positive, alpha-beta T cell | 2.14e-10 | 11 |
endo-epithelial cell | 2.88e-09 | 42 |
bronchial epithelial cell | 3.28e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
thymus | 6.12e-12 | 4 |
hemolymphoid system gland | 6.12e-12 | 4 |
thymic region | 6.12e-12 | 4 |
pharyngeal gland | 6.12e-12 | 4 |
thymus primordium | 6.12e-12 | 4 |
pharyngeal epithelium | 4.27e-08 | 6 |
neck | 4.68e-08 | 10 |
tracheobronchial tree | 1.33e-07 | 15 |
lower respiratory tract | 1.33e-07 | 15 |
lower respiratory tract epithelium | 3.28e-07 | 3 |
epithelium of bronchus | 3.28e-07 | 3 |
hemopoietic organ | 5.43e-07 | 7 |
immune organ | 5.43e-07 | 7 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.